In press
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Click the links to go to documents. Click the green arrow  to see metadata.
In press
Parsons, K. M., K. C. Balcomb III, J. K. Ford, J. W. Durban. In press.  The social dynamics of the southern resident killer whales and implications for the conservation of this endangered population. Animal Behavior.
Semmens, B., E. J. Ward, J. W. Moore, C. T. Darimont. In press. Quantifying Inter-And-Intra Population Niche Variability Using Hierarchical Bayesian Stable Isotope Mixing Models. PLoS ONE, 4(7):e6187.
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2009
Currens, K., R. Fuerstenberg, W. Graeber, K. Rawson, M. H. Ruckelshaus, N. J. Sands, J. Scott. 2009. Identification of an independent population of sockeye salmon in Lake Ozette, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-96, 18 p.
Good, T. P., J. A. June, M. A. Etnier, G. Broadhurst. 2009. Ghosts Of The Salish Sea: Threats To Marine Birds In Puget Sound And The Northwest Straits From Derelict Fishing Gear. Marine Ornithology, 37:67-76.
Grim, K. C., M. J. Wolfe, M. Edwards, J. Kaufman, S. Onjukka, P. Moran, J. C. Wolf. 2009. Epizootic ameloblastomas in Chinook salmon (Oncorhynchus tshawytscha) of the Northwestern United States. Veterinary Pathology, 46:622-635.
Rawson, K., N. J. Sands, K. P. Currens, W. H. Graeber, M. H. Ruckelshaus, R. R. Fuerstenberg, J. B. Scott. 2009. Viability criteria for the Lake Ozette sockeye salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-99, 38 p.
Sands, N. J., K. Rawson, K. Currens, W. Graeber, M. H. Ruckelshaus, R. Fuerstenberg, J. Scott. 2009. Determination of independent populations and viability criteria for the Hood Canal summer chum salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-101, 58 p.
Steel, E. A., A. H. Fullerton, Y. Caras, M. B. Sheer, P. Olson, D. Jensen, J. Burke, M. T. Maher, P. McElhany. 2009. A spatially explicit decision support system for managing wide-ranging species. Ecology and Society, 13(2):50.
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2008
Ford, M. J., K. Williamson. 2008. Report on 2006 White River captive brood pedigree analysis. Report to Grant County Public Utility District Contract Number, 430-2499, Northwest Fisheries Science Center, Conservation Biology, 36 p.
Galbreath, P. F., C. A. Beasley, B. A. Berejikian, R. W. Carmichael, D. E. Fast, M. J. Ford, J. A. Hesse, L. L. McDonald, A. R. Murdoch, C. M. Peven, D. A. Venditti. 2008. Recommendations for Broad Scale Monitoring to Evaluate the Effects of Hatchery Supplementation on the Fitness of Natural Salmon and Steelhead Populations. Final Draft Report of the Ad Hoc Supplementation Monitoring and Evaluation Workgroup. Fish Science Department, Columbia River Inter-Tribal Fish Commission; Quantitative Consultants, Inc.; Northwest Fisheries Science Center, NOAA Fisheries; Oregon Department of Fish and Wildlife; Yakima Klickitat Fisheries Project, Yakima Nation; Department of Fisheries, Nex Perce Tribe; Western Ecosystems Technology, Inc.; Washington Department of Fish and Wildlife; Fisheries Program, Chalan Public Utility District; Idaho Department of Fish and Game.
Hess, J. E., B. J. Swalla, P. Moran. 2008. New Molecular markers to genetically differentiate populations of Didemnum vexilluman (Kott, 2002) - an invasive ascidian species. Aquatic Invasions, 4(2):299-310.
Holt, M. M. 2008. Sound exposure and Southern Resident killer whales (Orcinus orca): A review of current knowledge and data gaps. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-89, 59 p.
Levin, P. S., M. J. Fogarty, G. C. Matlock. 2008. Integrated Ecosystem Assessments (White Paper).
Levin, P. S., M. J. Fogarty, G. C. Matlock, M. Ernst. 2008. Integrated ecosystem assessments. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-92, 20 p.
Stephenson, J. J., M. R. Campbell, J. E. Hess, C. Kozfkay, A. P. Matala, M. V. McPhee, P. Moran, S. R. Narum, M. M. Paquin, O. Schlei, M. P. Small, D. M. Van Doornik, J. K. Wenburg. 2008. A centralized model for creating shared, standarized, microsatellite data that simplifies inter-laboratory collaboration. Conservation Genetics, 10:1145-1149.
Wainwright, T. C., M. W. Chilcote, P. W. Lawson, T. E. Nickelson, C. W. Huntington, J. S. Mills, K. M. Moores, G. H. Reeves, H. A. Stout, L. A. Weitkamp. 2008. Biological recovery criteria for the Oregon Coast coho salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-91, 199 p.
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2007
Berntson, E. A., P. S. Levin, P. Moran. 2007. Conservation of North Pacific rockfishes: Ecological genetics and stock structure. Proceedings of the workshop March 2-3, 2004, Seattle, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-80, 80 p.
Brand, E. J., I. C. Kaplan, C. J. Harvey, P. S. Levin, E. A. Fulton, A. J. Hermann, J. C. Field. 2007. A spatially explicit ecosystem model of the California Current's food web and oceanography. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-84, 145 p.
Ford, M. J., N. J. Sands, P. McElhany, R. G. Kope, D. Simmons, P. Dygert. 2007. Analyses to Support a Review of an ESA Jeopardy Consultation on Fisheries Impacting Lower Columbia Tule Chinook Salmon. National Marine Fisheries Service, Northwest Fisheries Science Center, Conservation Biology Division; National Marine Fisheries Service, Northwest Regional Office, Sustainable Fisheries Division.
Gustafson, R. G., R. S. Waples, J. M. Myers, L. A. Weitkamp, G. J. Bryant, O. W. Johnson, J. J. Hard. 2007. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology, 21(4):1009-1020. (Appendix S1 | Appendix S2 | Appendix S3)
Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2007. Status review of Puget Sound steelhead (Oncorhynchus mykiss). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-81, 117 p.
Hauser, D. D., M. G. Logsdon, E. E. Holmes, G. R. VanBlaricom, R. W. Osborne. 2007. Summer distribution patterns of Southern resident killer whales (Orcinus orca): core areas and spatial segregation of social groups. Marine Ecology Progress Series, 351:301-310.
Holmes, E. E., J. L. Sabo, S. V. Viscido, W. Fagan. 2007. A Statistical Approach to quasi-extinction forecasting. Ecology Letters, 10:1182--1198.
Krahn, M. M., M. B. Hanson, R. W. Baird, R. H. Boyer, D. G. Burrows, C. K. Emmons, J. K. Ford, L. L. Jones, D. P. Noren, P. S. Ross, G. S. Schorr, T. K. Collier. 2007. Persistent organic pollutants and stable isotope ratios in biopsy samples (2004-2006) from Southern Resident killer whales. Marine Pollution Bulletin, 54(12):1903-1911.
Lawson, P. W., E. P. Bjorkstedt, M. W. Chilcote, C. W. Huntington, J. S. Mills, K. M. Moores, T. E. Nickelson, G. H. Reeves, H. A. Stout, T. C. Wainwright, L. A. Weitkamp. 2007. Identification of historical populations of coho salmon (Oncorhynchus kisutch) in the Oregon coast evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-79, 129 p.
Norman, K. C., J. A. Sepez, H. Lazrus, N. Milne, C. Package, S. Russell, K. Grant, R. Petersen Lewis, J. Primo, E. Springer, M. Styles, B. D. Tilt, I. Vaccaro. 2007. Community profiles for West Coast and North Pacific fisheries - Washington, Oregon, California, and other U.S. states. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-85, 602 p.
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2006
Gustafson, R. G., J. Drake, M. J. Ford, J. M. Myers, E. E. Holmes, R. S. Waples. 2006. Status review of Cherry Point Pacific herring (Clupea pallasii) and updated status review of the Georgia Basin Pacific herring distinct population segment under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-76, 182 p.
Myers, J. M., C. Busack, D. Rawding, A. R. Marshall, D. J. Teel, D. M. Van Doornik, M. T. Maher. 2006. Historical population structure of Pacific salmonids in the Willamette River and lower Columbia River basins. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-73, 311 p.
Ruckelshaus, M. H., K. P. Currens, W. H. Graeber, R. R. Fuerstenberg, K. Rawson, N. J. Sands, J. B. Scott. 2006. Independent populations of Chinook salmon in Puget Sound. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-78, 125 p.
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2005
Bernhardt, E. S., M. A. Palmer, J. D. Allan, G. Alexander, K. Barnas, S. Brooks, J. Carr, S. Clayton, C. Dahm, J. Follstad-Shah, D. Galat, S. Gloss, P. Goodwin, D. Hart, B. Hassett, R. Jenkinson, S. L. Katz, G. M. Kondolf, P. S. Lake, R. Lave, J. L. Meyer, T. K. O'Donnell, L. Pagano, B. Powell, E. Sudduth. 2005. Synthesizing U.S. river restoration efforts. Science, 308(5722):636-637.
Bottom, D. L., C. A. Simenstad, J. Burke, A. M. Baptista, D. A. Jay, K. K. Jones, E. Casillas, M. H. Schiewe. 2005. Salmon at river's end: The role of the estuary in the decline and recovery of Columbia River salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-68, 246 p.
Good, T. P., R. S. Waples, P. Adams. (eds.) 2005. Updated status of Federally listed ESUs of West Coast salmon and steelhead. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-66, 598 p.
Holmes, E. E., W. Fagan, J. J. Rango, A. Folarin, J. A. Sorensen, J. E. Lippe, N. E. McIntyre. 2005. Cross validation of quasi-extinction risks from real time series: An examination of diffusion approximation methods. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-67, 37 p.
Murdoch, A. R., T. N. Pearsons, T. W. Maitland, M. J. Ford, K. Williamson. 2005. Monitoring the reproductive success of naturally spawning hatchery and natural spring Chinook salmon in the Wenatchee River. Report to the Department of Energy, Bonneville Power Administration.
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2004
Berejikian, B.A., and M.J. Ford. 2004. Review of relative fitness of hatchery and natural salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-61, 28 p.
Ford, M. J., T. A. Lundrigan, P. Moran. 2004. Population genetics of Entiat River spring Chinook salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-60, 45 p. (PDF | Excel Data file)
Holmes, E. E. 2004. Beyond theory to application and evaluation: diffusion approximations for population viability analysis. Ecological Applications, 14:1272-1293. (Pre-Press Word | PDF | )
Holmes, E. E., B. Semmens. 2004. Population viability analysis for metapopulations: a diffusion approximation approach. Pages 565-598 in Hanski, I., O. E. Gaggiotti. (Eds.) Ecology, Genetics, and Evolution of Metapopulations. Elsevier Press.
Krahn, M. M., M. J. Ford, W. F. Perrin, P. R. Wade, R. P. Angliss, M. B. Hanson, B. L. Taylor, G. M. Ylitalo, M. E. Dahlheim, J. E. Stein, R. S. Waples. 2004. 2004 Status Review of Southern Resident Killer Whales (Orcinus orca) under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-62, 73 p.
Roegner, G. C., D. L. Bottom, A. M. Baptista, J. Burke, S. A. Hinton, D. A. Jay, C. A. Simenstad, E. Casillas, K. K. Jones. 2004. Estuarine habitat and juvenile salmon: current and historical linkages in the lower Columbia River and estuary, 2002. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ20374382.
Sabo, J. L., E. E. Holmes, P. Kareiva. 2004. The efficacy of simple viability models in ecological risk assessment: Does density dependence matter? Ecology, 85:328-341.
Waples, R. S., D. J. Teel, J. M. Myers, A. R. Marshall. 2004. Life-history divergence in Chinook salmon: historic contingency and parallel evolution. Evolution, 58(2):386-403. (txt | Excel)
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2003
Good, T. P., T. K. Harms, M. H. Ruckelshaus. 2003. Misuse of checklist assessments in endangered species recovery efforts. Conservation Ecology, 7(2):12, online .
McClure, M. M., E. E. Holmes, B. L. Sanderson, C. E. Jordan. 2003. A large-scale, multispecies status assessment: anadromous salmonids in the Columbia River Basin. Ecological Applications, 13:964-989. (Pre-Press Word | PDF)
Teel, D. J., D. M. Van Doornik, D. R. Kuligowski, W. S. Grant. 2003. Genetic analysis of juvenile coho salmon (Oncorhynchus kisutch) off Oregon and Washington reveals few Columbia River wild fish. Fishery Bulletin, 101:640-652. (Allele Frequencies | Electroporetic Conditions)
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2002
Holmes, E. E., W. Fagan. 2002. Validating population viability analysis for corrupted data sets. Ecology, 83:2379-2386. (PDF | Pre-Press Word)
Krahn, M. M., P. R. Wade, S. T. Kalinowski, M. E. Dahlheim, B. L. Taylor, M. B. Hanson, G. M. Ylitalo, R. P. Angliss, J. E. Stein, R. S. Waples. 2002. Status Review of Southern Resident Killer Whales (Orcinus orca) under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-54, 133 p.
Waknitz, F. W., T. J. Tynan, C. E. Nash, R. N. Iwamoto, L. G. Rutter. 2002. Review of Potential Impacts of Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon Evolutionarily Significant Units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-53, 83 p. (PDF | HTML)
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2001
Ford, M. J., P. Budy, C. Busack, e. al. 2001. Upper Columbia River Steelhead and Spring Chinook Salmon: Population Structure and Biological Requirements. Final Report, March 2001.
Levin, P. S., M. H. Schiewe. 2001. Preserving salmon biodiversity. American Scientist, 89:220-227.
Nash, C. E., K. M. Brooks, W. T. Fairgrieve, R. N. Iwamoto, C. V. Mahnken, M. B. Rust, M. S. Strom, F. W. Waknitz. 2001. The net-pen salmon farming industry in the Pacific Northwest. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-49, 125 p. (PDF | HTML)
Stout, H. A., B. B. McCain, R. D. Vetter, T. L. Builder, W. H. Lenarz, L. L. Johnson, R. D. Methot. 2001. Status Review of Copper Rockfish (Sebastes caurinus), Quillback Rockfish (S. maliger), and Brown Rockfish (S. auriculatus) in Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-46, xxiv, 158 p.
Stout, H. A., R. G. Gustafson, W. H. Lenarz, B. B. McCain, D. M. Van Doornik, T. L. Builder, R. D. Methot. 2001. Status review of Pacific herring in Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-45, 175 p.
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2000
Gustafson, R. G., W. H. Lenarz, B. B. McCain, C. C. Schmitt, W. S. Grant, T. L. Builder, R. D. Methot. 2000. Status review of Pacific hake, Pacific cod, and walleye pollock from Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-44, 275 p.
Holmes, E. E., P. Kareiva. 2000. Using single species measurements to anticipate community consequences of environmental contaminants. Page 344 in Albers, P., G. Heinz, H. Ohlendorf. (Eds.) Environmental Contaminants and Terrestrial Vertebrates: Effects on Populations, Communities, and Ecosystems. Special Publication of SETAC Press.
McElhany, P., M. H. Ruckelshaus, M. J. Ford, T. C. Wainwright, E. P. Bjorkstedt. 2000. Viable salmon populations and the recovery of evolutionarily significant units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-42, 156 p.
Teel, D. J., G. B. Milner, G. A. Winans, W. S. Grant. 2000. Genetic population structure and origin of life-history types in chinook salmon in British Columbia, Canada. Transactions of the American Fisheries Society, 129:194-209.
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1999
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. 1999. Status review of coastal cutthroat trout from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-37, 292 p. (PDF | HTML)
Kareiva, P., S. Andelman, D. Doak, B. Elderd, M. Groom, J. M. Hoekstra, L. Hood, F. James, J. Lamoreux, G. LeBuhn, C. McCulloch, J. Regetz, L. Savage, M. H. Ruckelshaus, D. Skelly, H. Wilbur, K. Zamudio, E. Aas. 1999. Using science in habitat conservation plans. American Institute of Biological Sciences, Washington, D.C., vi, 97 p.
Wainwright, T. C., R. G. Kope. 1999. Methods of extinction risk assessment developed for U.S. West Coast salmon. ICES Journal of Marine Science, 56:444-448.
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1998
Myers, J. M., R. G. Kope, G. J. Bryant, D. J. Teel, L. J. Lierheimer, T. C. Wainwright, W. S. Grant, F. W. Waknitz, K. Neely, S. Lindley, R. S. Waples. 1998. Status review of Chinook salmon from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-35, 443 p. (PDF | HTML)
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1997
Gustafson, R. G., T. C. Wainwright, G. A. Winans, F. W. Waknitz, L. T. Parker, R. S. Waples. 1997. Status review of sockeye salmon from Washington and Oregon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-33, 282 p. (PDF | HTML)
Johnson, O. W., W. S. Grant, R. G. Kope, K. Neely, F. W. Waknitz, R. S. Waples. 1997. Status review of chum salmon from Washington, Idaho. Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-32, 280 p. (PDF | HTML)
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1996
Busby, P. J., T. C. Wainwright, G. J. Bryant, L. J. Lierheimer, R. S. Waples, F. W. Waknitz, I. V. Lagomarsino. 1996. Status Review of West Coast Steelhead from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-27, 261 p. (PDF | HTML)
Hard, J. J., R. G. Kope, W. S. Grant, F. W. Waknitz, L. T. Parker, R. S. Waples. 1996. Status review of pink salmon from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-25, 131 p. (PDF | HTML)
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1995
Waknitz, F. W., G. M. Matthews, T. C. Wainwright, G. A. Winans. 1995. Status review for mid- Columbia River summer chinook salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-22, 80 p.
Weitkamp, L. A., T. C. Wainwright, G. J. Bryant, G. B. Milner, D. J. Teel, R. G. Kope, R. S. Waples. 1995. Status review of coho salmon from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-24, 258 p. (PDF | HTML)
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1994
Johnson, O. W., R. S. Waples, T. C. Wainwright, K. Neely, F. W. Waknitz, L. T. Parker. 1994. Status review for Oregon's Umpqua River sea-run cutthroat trout. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-15, 122 p.
Park, L. K., P. Moran, R. S. Waples. (Eds.) 1994. Application of DNA technology to the management of Pacific salmon: Proceedings of the workshop. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-17.
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1993
Busby, P. J., O. W. Johnson, T. C. Wainwright, F. W. Waknitz, R. S. Waples. 1993. Status review for Oregon's Illinois River winter steelhead. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-10, 85 p.
Prentice, E. F., D. J. Maynard, P. Sparks-Mcconkey, C. S. McCutcheon, D. Neff, W. Steffens, F. W. Waknitz, A. L. Jensen, L. C. Stuehrenberg, S. L. Downing, B. P. Sandford, T. W. Newcomb. 1993. A study to determine the biological feasibility of a new fish tagging system. Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 182 p.
Weitkamp, L. A., D. B. Dey. 1993. Environmental monitoring of the Manchester Naval Fuel Pier replacement, Puget Sound, Washington, 1992. Report to the Department of Navy, Contract N62474-91-MP-00758, 62 p.
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1992
Hard, J. J., R. P. Jones Jr., R. S. Waples. 1992. Pacific Salmon and Artificial Propagation Under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-2.
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1991
Johnson, O. W., T. A. Flagg, D. J. Maynard, G. B. Milner, F. W. Waknitz. 1991. Status review for lower Columbia River coho salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-202, 94 p. (Complete Article (PDF) | Summary (HTML))
Waples, R. S., O. W. Johnson. 1991. Status Review for Snake River Sockeye Salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-195.
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