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In press
Allendorf, F. W., J. J. Hard. In press. Human-Induced Evolution Caused By Unnatural Selection Through Harvest Of Wild Animals. In In the Light of Evolution III: Two Centuries of Darwin. National Academies Press, Washington, DC.
Burnett, K. M., J. L. Ebersole, R. E. Gresswell, D. P. Larsen, P. W. Lawson, D. J. Miller, J. D. Rodgers, E. A. Steel, D. L. Stevens, C. E. Torgersen. In press. Data and Modeling Tools for Assessing Landscape-Level Influences on Salmonid Population: Examples from Western Oregon. In Sustainability of the Arctic-Yukon-Kuskokwim Salmon Fisheries. AFS.
Doctor, K. K., R. Hilborn, M. Rowse, T. Quinn. In press. Spatial and temporal patterns of upriver migration in populations of sockeye salmon, Oncorhynchus nerka, in the Wood River System, Bristol Bay, Alaska. Transactions of the American Fisheries Society.
Eldridge, W. H., J. J. Hard, K. A. Naish. In press. Fishery-induced evolution in Chinook salmon: the role of harvest gear, location and genetic correlations among life history traits. Ecological Applications.
Fullerton, A. H., E. A. Steel, Y. Caras, I. A. Lange. In press. Effects of Spatial Pattern and Economic Uncertainties on Freshwater Habitat Restoration Planning: a Simulation Exercise. Restoration Ecology.
Hard, J. J. In press. Case study of Pacific salmon. In Dieckmann, U., O. R. Godoe, M. Heino, J. Mork. (Eds.) Fisheries-Induced Adaptive Change. Cambridge University Press, Cambridge, U.K.
Hard, J. J., W. H. Eldridge, K. A. Naish, C. Krueger. In press. Genetic consequences of size-selective fishing: implications for viability of Yukon River Chinook salmon. In Krueger, C., C. E. Zimmerman. (Eds.) Sustainability of the Arctic-Yukon-Kuskokwim Salmon Fisheries: What Do We Know About Salmon Ecology, Management, and Fisheries? American Fisheries Society, Anchorage.
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. In press. Coastwide Status Review of Coastal Cutthroat Trout (Oncorhynchus clarki clarki) by the National Marine Fisheries Service for listing under the Endangered Species Act. The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation. 2 Oregon Chapter of AFS, Portland, OR
Lawson, P. W. In press. What are we missing? Butterflies, flowers, and salmon models. American Fisheries Society Symposium, 71:33-44.
McElhany, P., K. A. Avery, N. J. Yoder, C. Busack, B. Thompson. In press. Dealing with Uncertainty in Ecosystem Models: Lessons from a Complex Salmon Model. Ecological Applications.
Steel, E. A., P. McElhany, N. J. Yoder, M. D. Purser, k. Malone, B. E. Thompsen, K. A. Avery, D. Jensen, G. Blair, C. Busack, M. D. Bowen, J. Hubble, T. Kantz. In press. Making the best use of modeled data: Multiple approaches to sensitivity analysis of a fish-habitat model. Fisheries.
Waples, R. S., M. M. McClure, T. C. Wainwright, P. McElhany, P. W. Lawson. In press. Integrating evolutionary and ecological considerations in recovery planning for Pacific salmon. Cambridge University Press
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2009
Allendorf, F. W., J. J. Hard. 2009. Human-induced evolution caused by unnatural selection through harvest of wild animals. Proceedings of the National Academy of Sciences, USA, 106(Supplement 1):9987-9994.
Beechie, T.J., G.R. Pess, M.M. Pollock, M.H. Ruckelshaus, P. Roni. 2009. Chapter 33: Restoring rivers in the 21st century: science challenges in a management context. Pages 695-716. Editors R.J. Beamish and B.J. Rothschild. In The Future of Fisheries Science in North America, Springer, Heidelberg.
Currens, K., R. Fuerstenberg, W. Graeber, K. Rawson, M. H. Ruckelshaus, N. J. Sands, J. Scott. 2009. Identification of an independent population of sockeye salmon in Lake Ozette, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-96, 18 p.
Fullerton, A. H., A. Steel, Y. Caras, M. B. Sheer, P. Olson, J. Kaje. 2009. Putting watershed restoration in context: alternative future scenarios influence management outcomes. Ecological Applications, 19(1):218-235.
Good, T. P., J. A. June, M. A. Etnier, G. Broadhurst. 2009.  Ghosts Of The Salish Sea: Threats To Marine Birds In Puget Sound And The Northwest Straits From Derelict Fishing Gear. Marine Ornithology, 37:67-76.
Honea, J., J. Jorgensen, M. McClure, T. Cooney, K. Engie, & R. Hilborn. 2009. Evaluating habitat effects on population status: Influence of habitat restoration on spring-run Chinook salmon. Freshwater Biology 54:1576-1592.
Jorgensen, J., J. Honea, M. McClure, T. Cooney, D. Holzer, & K. Engie. 2009. Linking landscape-level change to habitat quality: an evaluation of restoration actions on freshwater habitat of spring-run Chinook salmon. Freshwater Biology 54:1560-1575.
Kendall, N.W., J. J. Hard, and T. P. Quinn. 2009. Quantifying six decades of fishery selection for size and age at maturity in sockeye salmon. Evolutionary Applications 2:523-536.
Naiman, R. J., J. M. Helfield, K. K. Bartz, D. C. Drake, J. M. Honea. 2009. Pacific Salmon, Marine-Derived Nutrients and the Characteristics of Aquatic and Riparian Ecosystems. American Fisheries Society Symposium, 69:395-425.
Rawson, K., N. J. Sands, K. P. Currens, W. H. Graeber, M. H. Ruckelshaus, R. R. Fuerstenberg, J. B. Scott. 2009. Viability criteria for the Lake Ozette sockeye salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-99, 38 p.
Ruckelshaus, M. H., T. E. Essington, P. S. Levin. 2009. Marine Ecosystem Based Management in Practice. Puget Sound, WA, USA. Page 392 in McLeod, K. L., H. Leslie. (Eds.) Ecosystem-Based Management for the Oceans. Island Press, San Francisco, CA.
Ruckelshaus, M. H., A. Guerry. 2009. Valuing marine ecosystems? Marine Scientist, 26:26-29.
Sands, N. J., K. Rawson, K. Currens, W. Graeber, M. H. Ruckelshaus, R. Fuerstenberg, J. Scott. 2009. Determination of independent populations and viability criteria for the Hood Canal summer chum salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-101, 58 p.
Steel, E. A., A. H. Fullerton, Y. Caras, M. B. Sheer, P. Olson, D. Jensen, J. Burke, M. T. Maher, P. McElhany. 2009. A spatially explicit decision support system for managing wide-ranging species. Ecology and Society, 13(2):50.
Steel, E. A., T. J. Beechie, M. H. Ruckelshaus, A. H. Fullerton, P. McElhany, P. Roni. 2009. Mind the gap: Uncertainty and model communication between managers and scientists. American Fisheries Society Symposium. 71 357-372 pp.
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2008
Angilletta Jr., M. J., E. A. Steel, K. K. Bartz, J. G. Kingsolver, M. D. Scheuerell, B. R. Beckman, L. G. Crozier. 2008. Big dams and salmon evolution: changes in thermal regimes and their potential evolutionary consequences. Evolutionary Applications, 1(2):286-299.
Bromaghin, J. F., R. M. Nielson, and J. J. Hard. 2008. An investigation of the potential effects of selective exploitation on the demography and productivity of Yukon River Chinook Salmon. US Fish and Wildlife Service, Alaska Fisheries Technical Report No. 100, 69 p.
Crozier, L. G., A. P. Hendry, P. W. Lawson, T. P. Quinn, N. Mantua, J. Battin, R. G. Shaw, R. B. Huey. 2008. Evolutionary responses to climate change for organisms with complex life histories: evolution and plasticity in Pacific salmon. Evolutionary Applications, 1(1):252-270.
Ford MJ, Hard JJ, Boelts B, LaHood E, Miller J. 2008. Estimates of natural selection in a salmon population in captive and natural environments. Conservation Biology 22:783-794
Fullerton, A. H., D. Jensen, E. A. Steel, D. Miller, P. McElhany. 2008. How Certain Are Salmon Recovery Forecasts? A Watershed-Scale Sensitivity Analysis. Environmental Modeling and Assessment.
Good, T. P., J. R. Davies, B. J. Burke, M. H. Ruckelshaus. 2008. Incorporating catastrophic risk assessments into setting conservation goals for Pacific salmon. Ecological Applications 18(1): 246-257.
Hard, J. J., M. R. Gross, M. Heino, R. Hilborn, R. G. Kope, R. Law, and J. D. Reynolds. 2008. Evolutionary consequences of fishing and their implications for salmon. Evolutionary Applications 1(2):388-408.
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, and J. J. Hard. 2008. Summary of 1998 coast wide coastal cutthroat trout status review conducted by the National Marine Fisheries Service. Pages 3-4 in P. J. Connolly, T. H. Williams, and R. E. Gresswell, editors. The 2005 coastal cutthroat trout symposium: status, management, biology, and conservation. Oregon Chapter, American Fisheries Society, Portland.
LaHood ES, Miller JJ, Apland C, Ford MJ (2008) A Rapid, Ethanol-Free Fish Tissue Collection Method for Molecular Genetic Analyses. Transactions of the American Fisheries Society: Vol. 137, No. 4 pp. 11041107
McClure, M. M., F. Utter, C. Baldwin, R. W. Carmichael, P. Hassemer, P. Howell, P. Spruell, T. Cooney, H. Schaller, C. Petrosky. 2008. Evolutionary Effects of Alternative Artificial Propagation Programs: Implications for the Viability of Endgered Anadromous Salmonids. Evolutionary Applications.
McClure, M. M., S. M. Carlson, T. J. Beechie, G. R. Pess, J. C. Jorgensen, S. M. Sogard, S. E. Sultan, D. M. Holzer, J. Travis, B. L. Sanderson, M. E. Power, R. W. Carmichael. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications.
Naish, K. A., and J. J. Hard. 2008. Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes. Fish and Fisheries 9:396-422.
Neely, K. G., J. M. Myers, J. J. Hard, and K. D. Shearer. 2008. Comparison of growth, feed intake, and nutrient efficiency in a selected strain of coho salmon (Oncorhynchus kisutch) and its source stock. Aquaculture 283 (2008):134-140.
Pess, G. R., M. L. McHenry, T. J. Beechie, and J. Davies. 2008. Biological impacts of the Elwha River dams and potential salmonid responses to dam removal. Northwest Science 82 (Special Issue):72-90.
Ruckelshaus, M. H., T. Klinger, N. Knowlton, D. Demaster, E. Sala. 2008. Marine Ecosystem-Based Management in Practice: Scientific and Governance Challenges. Bioscience, 58:53-63.
Thrower, F. P., and J. J. Hard. 2009. Effects of a single event of close inbreeding on growth and survival in steelhead. Conservation Genetics 10:1299-1307.
Wainwright, T. C., M. W. Chilcote, P. W. Lawson, T. E. Nickelson, C. W. Huntington, J. S. Mills, K. M. Moores, G. H. Reeves, H. A. Stout, L. A. Weitkamp. 2008. Biological recovery criteria for the Oregon Coast coho salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-91, 199 p.
Top of Page
2007
Battin, J., M. W. Wiley, M. H. Ruckelshaus, R. N. Palmer, E. Korb, K. K. Bartz, H. Imaki. 2007. Projected impacts of future climate change on salmon habitat restoration actions in a Puget Sound river. Proceedings of the National Academy of Sciences, 104:6720-6725.
Beamer, E. M., C. A. Rice, R. Henderson, K. L. Fresh, M. Rowse. 2007. Taxonomic Composition of Fish assemblages, and Density and Size of Juvenile Chinook Salmon in the Greater Skagit River Estuary: Field Sampling and Data Summary Report. Report to the Seattle District of the U.S. Army Corps of Engineers.
Davies, Jeremy R., Kerry M. Lagueux, Beth Sanderson, and Timothy J. Beechie, 2007. Modeling Stream Channel Characteristics From Drainage-Enforced DEMs in Puget Sound, Washington, USA. Journal of the American Water Resources Association (JAWRA) 43(2):414-426.
Ford, M. J., N. J. Sands, P. McElhany, R. G. Kope, D. Simmons, P. Dygert. 2007. Analyses to Support a Review of an ESA Jeopardy Consultation on Fisheries Impacting Lower Columbia Tule Chinook Salmon. National Marine Fisheries Service, Northwest Fisheries Science Center, Conservation Biology Division; National Marine Fisheries Service, Northwest Regional Office, Sustainable Fisheries Division.
Good, T. P., M. M. McClure, B. P. Sandford, K. Barnas, D. M. Marsh, B. A. Ryan, E. Casillas. 2007. Quantifying the effect of Caspian tern predation on endangered and threatened Pacific salmonids in the Columbia River. Endangered Species Research, 3:11-21.
Good, T. P., T. J. Beechie, P. McElhany, M. M. McClure, M. H. Ruckelshaus. 2007. Recovery planning for Endangered Species Act-listed Pacific salmon: Using science to inform goals and strategies. Fisheries, 32:426-440.
Gustafson, R. G., R. S. Waples, J. M. Myers, L. A. Weitkamp, G. J. Bryant, O. W. Johnson, J. J. Hard. 2007. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology, 21(4):1009-1020. (Appendix S1 | Appendix S2 | Appendix S3)
Hall, J.E., D.M. Holzer, and T.J. Beechie. 2007. Predicting river floodplain and lateral channel migration for salmon habitat conservation. Journal of the American Water Resources Association. 43(3):786-797.
Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2007. Status review of Puget Sound steelhead (Oncorhynchus mykiss). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-81, 117 p.
Hoekstra, J. M., K. K. Bartz, M. H. Ruckelshaus, J. M. Moslemi, T. K. Harms. 2007. Quantitative threat analysis for management of an imperiled species-Chinook salmon (Oncorhynchus tshawytscha). Ecological Applications, 17:2061-2073.
A. R. Kapuscinski, J. J. Hard, R. Neira, K. M. Paulson, A. Ponniah, W. Kamonrat, W. Mwanja, I. A. Fleming, J. Gallardo, R. H. Devlin, and J. Trisak. 2007. Approaches to assessing gene flow. Pp. 112-150 in Kapuscinski, A. R., S. Li, K. R. Hayes, and G. Dana (editors), Environmental Risk Assessment of Genetically Modified Organisms, Vol 3: Methodologies for Transgenic Fish. CABI International, Wallingford, Oxfordshire, UK.
Lawson, P. W., E. P. Bjorkstedt, M. W. Chilcote, C. W. Huntington, J. S. Mills, K. M. Moores, T. E. Nickelson, G. H. Reeves, H. A. Stout, T. C. Wainwright, L. A. Weitkamp. 2007. Identification of historical populations of coho salmon (Oncorhynchus kisutch) in the Oregon coast evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-79, 129 p.
McClure, M. M., M. H. Ruckelshaus. 2007. Collaborative science: moving ecosystem-based management forward in Puget Sound. Fisheries.
Senanan, W., J. J. Hard, A. Alcivar-Warren, J. Trisak, M. Zakaraia-Ismail, and M. L. Hernandez. 2007. Risk management: Post-approval monitoring and remediation. Pp. 272-290 in Kapuscinski, A. R., S. Li, K. R. Hayes, and G. Dana (editors), Environmental Risk Assessment of Genetically Modified Organisms, Vol 3: Methodologies for Transgenic Fish. CABI International, Wallingford, Oxfordshire, UK.
Top of Page
2006
Bartz, K. K., K. M. Lagueux, M. D. Scheuerell, T. J. Beechie, A. D. Haas, M. H. Ruckelshaus. 2006. Translating restoration scenarios into habitat conditions: an initial step in evaluating recovery strategies for Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 63:1578-1595.
Beechie, T. J., M. Liermann, M. M. Pollock, S. Baker, J. R. Davies. 2006. Channel pattern and river-floodplain dynamics in forested mountain river systems. Geomorphology, 78(1-2):124-141.
Beechie, T.J., M. Ruckelshaus, E. Buhle, A. Fullerton, L. Holsinger. 2006. Hydrologic regime and the conservation of salmon life history diversity. Biological Conservation 130(4):560-572.
Ellis, J., T. P. Good. 2006. Nest attributes, aggression, and breeding success of gulls in single and mixed species subcolonies. Condor, (108)211-219.
Ford MJ, Fuss H, Boelts B, LaHood, E, Hard J, Miller J. 2006. Changes in run timing and natural smolt production in a naturally spawning coho salmon (Oncorhynchus kisutch) stream after 60 years of intensive hatchery supplementation. Canadian Journal of Fisheries and Aquatic Sciences 63:2343-2355.
Good, T. P., D. Harstad, C. Hall, C. Maranto, M. Harper, B. A. Ryan. 2006. Predation on juvenile salmonids by Caspian Terns nesting in Potholes Reservoir. In Appendix in Piscivorous Waterbird Research on the Columbia River: draft 2005 season summary.
Gustafson, R. G., E. Iwamoto. 2006. A DNA-based identification key to Pacific Northwest freshwater mussel glochidia: importance to salmonid and mussel conservation. Northwest Science, 79(4):233-245.
Gustafson, R. G., J. Drake, M. J. Ford, J. M. Myers, E. E. Holmes, R. S. Waples. 2006. Status review of Cherry Point Pacific herring (Clupea pallasii) and updated status review of the Georgia Basin Pacific herring distinct population segment under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-76, 182 p.
Hard, J. J., D. G. Elliott, R. J. Pascho, D. M. Chase, L. K. Park, J. R. Winton, D. E. Campton. 2006. Genetic effects of ELISA-based segregation for control of bacterial kidney disease in Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 63:2793-2808.
Hard, J. J., L. S. Mills, J. M. Peek. 2006. Genetic implications of reduced survival of male red deer (Cervus elaphus) under harvest. Wildlife Biology, 12(4):427-441.
Kiffney, P. M., C. M. Greene, J. R. Davies, J. E. Hall. 2006. Tributary streams create spatial discontinuities in habitat, biological productivity, and diversity in mainstem rivers. Canadian Journal of Fisheries and Aquatic Sciences.
Kope, R. 2006. Cumulative effects of multiple sources of bias in estimating spawner-recruit parameters with application to harvested stocks of Chinook salmon (Oncorhynchus tshawytscha. Fisheries Research. 82: 101-110.
Myers, J. M., C. Busack, D. Rawding, A. R. Marshall, D. J. Teel, D. M. Van Doornik, M. T. Maher. 2006. Historical population structure of Pacific salmonids in the Willamette River and lower Columbia River basins. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-73, 311 p.
Ruckelshaus, M. H., K. P. Currens, W. H. Graeber, R. R. Fuerstenberg, K. Rawson, N. J. Sands, J. B. Scott. 2006. Independent populations of Chinook salmon in Puget Sound. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-78, 125 p.
Ruckelshaus, M. H., D. Darm. 2006. Science and Implementation. Pages 104-126 in Scott, J. M., D. D. Goble, F. W. Davis. (Eds.) The Endangered Species Act at 30: Conserving Biodiversity in Human-Dominated Landscapes. Island Press, Washington, D.C.
Scheuerell, M. D., R. Hilborn, M. H. Ruckelshaus, K. K. Bartz, K. M. Lagueux, A. D. Haas, K. Rawson. 2006. The Shiraz model: a tool for incorporating fish-habitat relationships in conservation planning. Canadian Journal of Fisheries and Aquatic Sciences, 63:1596-1607.
Sheer, M.B. and E.A. Steel. 2006. Lost watersheds: barriers, aquatic habitat connectivity and salmon persistence in the Willamette and Lower Columbia basins. Transactions of the American Fisheries Society 135(6):1654-1669.
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2005
Bottom, D. L., C. A. Simenstad, J. Burke, A. M. Baptista, D. A. Jay, K. K. Jones, E. Casillas, M. H. Schiewe. 2005. Salmon at river's end: The role of the estuary in the decline and recovery of Columbia River salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-68, 246 p.
Good, T. P., K. Barnas, D. M. Marsh, M. M. McClure, B. A. Ryan, B. P. Sandford, E. Casillas. 2005. Caspian Tern Predation on Juvenile Salmonid Outmigrants in the Columbia River Estuary. In Caspian Tern Management to Reduce Predation of Juvenile Salmonids in the Columbia River Estuary. U.S. Fish and Wildlife Service Migratory Birds and Habitat Programs, Portland, OR.
Good, T. P., R. S. Waples, P. Adams. (eds.) 2005. Updated status of Federally listed ESUs of West Coast salmon and steelhead. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-66, 598 p.
Hard, J.J., and K.A. Naish. 2005. Evaluate effects of inbreeding and inbreeding depression. In B.A. Berejikian (editor), Research on captive broodstock programs for Pacific salmon, 2004-2005 Annual report, Project No. 199305600, p. 138-160. Available Bonneville Power Administration (BPA Report DOE/BP-00017690-1, 162 electronic pages), Environment Fish and Wildlife, P.O. Box 3621, Portland, OR 97208.
Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2005. Status review update for Puget Sound steelhead. Report submitted to NOAA/NMFS Northwest Regional Office, Seattle, Washington, 26 July 2005, 70 p. + 4 appendices.
Keister, J. E., J. B. Johnson, C. A. Morgan, W. T. Peterson. 2005. Biological indicators of the timing and direction of warm-water advection during the 1997/1998 El Niqo off the central Oregon coast, USA. Marine Ecology Progress Series, 295:43-48.
Kope, R. G. 2005. Performance of ocean salmon fisheries management relative to National Marine Fisheries Service Endangered Species Act consultation standards. Northwest Fisheries Science Center, Seattle, WA, 28 p.
McClelland, E. K., J. M. Myers, J. J. Hard, L. K. Park, K. A. Naish. 2005. Two generations of outbreeding in coho salmon (Oncorhynchus kisutch): effects on size and growth. Canadian Journal of Fisheries and Aquatic Sciences, 62:2538-2547.
Oosterhout, G. R., C. W. Huntington, T. E. Nickelson, P. W. Lawson. 2005. Potential benefits of a conservation hatchery program for supplementing Oregon coast coho salmon (Oncorhynchus kisutch) populations: a stochastic model investigation. Canadian Journal of Fisheries and Aquatic Sciences, 62:1920-1935.
Tear, T. H., P. Kareiva, P. L. Angermeier, P. Comer, B. Czech, R. Kautz, L. Landon, D. Mehlman, K. Murphy, M. H. Ruckelshaus, J. M. Scott, G. Wilhere. 2005. How much is enough? The recurrent problem of setting measurable objectives in conservation. Bioscience, 55:835-849.
Top of Page
2004
Ford, M. J., D. J. Teel, D. M. Van Doornik, D. R. Kuligowski, P. W. Lawson. 2004. Genetic population structure of central Oregon Coast coho salmon (Oncorhynchus kisutch). Conservation Genetics, 5:797-812.
Gharrett, A. J., R. G. Gustafson, P. Johnson, J. L. Nielsen, J. E. Seeb, L. W. Seeb, W. W. Smoker, R. L. Wilmot, S. Keller, G. H. Thorgaard. 2004. Introduction to genetics of subpolar fish and invertebrates. Environmental Biology of Fishes, 69(1-4):1-5.
Good, T. P. 2004. Distribution and abundance patterns in Caribbean rocky intertidal zones. Bulletin of Marine Science, 74:459-468.
Granath, K. L., W. W. Smoker, A. J. Gharrett, J. J. Hard. 2004. Effects on embryo development time and survival of intercrossing three geographically separate populations of Southeast Alaska coho salmon, Oncorhynchus kisutch. Environmental Biology of Fishes, 69:299-306.
Hard, J.J., and K.A. Naish. 2004. Evaluate effects of inbreeding and inbreeding depression. In B.A. Berejikian (editor), Research on captive broodstock programs for Pacific salmon, 2003-2004 Annual report, Project No. 199305600, p.164-189. Available Bonneville Power Administration (BPA Report DOE/BP-00005227-4, 190 electronic pages), Environment Fish and Wildlife, P.O. Box 3621, Portland, OR 97208.
Hard, J. J. 2004. Evolution of chinook salmon life history under size-selective harvest. Pages 315-337 in Hendry, A. P., S. C. Stearns. (Eds.) Evolution Illuminated. Salmon and their relatives. Oxford University Press.
Iwamoto, E., M. J. Ford, R. G. Gustafson. 2004. Genetic population structure of Pacific Hake (Merluccius productus) in the Pacific Northwest. Environmental Biology of Fishes, 69:187-199.
Johnson, J. B., K. S. Omland. 2004. Model selection in ecology and evolution. Trends in Ecology and Evolution, 19:101-108.
Johnson, O. W., K. Neely, R. S. Waples. 2004. Lopsided fish in the Snake River Basin - fluctuating asymmetry as a way of assessing impact of hatchery supplementation in chinook salmon, Oncorhynchus tshawytscha. Environmental Biology of Fishes, 69:379-393.
Keith, C., M. A. McCarthy, H. Regan, T. Regan, C. Bowles, C. Drill, C. Craig, B. Pellow, M. Burgman, L. Master, M. H. Ruckelshaus, B. Mackenzie, S. Andelman, P. R. Wade. 2004. Protocols for listing threatened species can forecast extinction. Ecology Letters, 7:1101-1108.
Lawson, P. W., E. A. Logerwell, N. Mantua, R. C. Francis, V. N. Agostini. 2004. Environmental factors influencing freshwater survival and smolt production in Pacific Northwest coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences, 61:360-373.
Mahnken, C. V., W. T. Fairgrieve, F. W. Waknitz, D. J. Maynard, H. L. Blankenship. 2004. Lessons for marine fish enhancement: experiences with Pacific salmon. Pages 91-105 in Stock Enhancement and Sea Ranching: Developments, Pitfalls and Opportunities. Blackwell, Oxford.
McCarthy, M. A., C. Keith, J. Tietjen, M. Burgman, M. Maunder, L. Master, B. W. Brook, G. Mace, H. P. Possingham, R. Medellin, S. Andelman, H. Regan, T. Regan, M. H. Ruckelshaus. 2004. Comparing predictions of extinction risk using models and subjective judgement. Acta Oecologica, 26:67-74.
Roegner, G. C., D. L. Bottom, A. M. Baptista, J. Burke, S. A. Hinton, D. A. Jay, C. A. Simenstad, E. Casillas, K. K. Jones. 2004. Estuarine habitat and juvenile salmon: current and historical linkages in the lower Columbia River and estuary, 2002. Report of Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ20374382.
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Smoker, W. W., I. A. Wang, A. J. Gharrett, J. J. Hard. 2004. Embryo survival and smolt to adult survival in second-generation outbred coho salmon. Journal of Fish Biology, 65(Supplement A):254-262.
Steel, E. A., B. E. Feist, D. Jenson, G. R. Pess, M. B. Sheer, J. Brauner, R. E. Bilby. 2004. Landscape models to understand steelhead (Oncorhynchus mykiss) distribution and help prioritize barrier removals in the Willamette Basin, OR, U.S.A. Canadian Journal of Fisheries and Aquatic Sciences, 61:999-1011.
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Good, T. P., T. K. Harms, M. H. Ruckelshaus. 2003. Misuse of checklist assessments in endangered species recovery efforts. Conservation Ecology, 7(2):12, online .
Johnson, J. B., J. T. Silverstein, W. R. Wolters, M. Shimizu, W. W. Dickhoff, B. S. Shepherd. 2003. Disparate regulation of insulin-like growth factor-binding proteins in a primitive, ictalurid, teleost (Ictalurus punctatus). General and Comparative Endocrinology, 134:122-130.
Johnson, J. B., A. L. Basolo. 2003. Predator exposure alters female mate choice in the green swordtail. Behavioral Ecology, 14:619-625.
Leslie, H., M. H. Ruckelshaus, I. R. Ball, S. Andelman, H. P. Possingham. 2003. Using siting algorithms in the design of marine reserve networks. Ecological Applications, 13(1 Suppl.):S185-S198.
Logerwell, E. A., N. Mantua, P. W. Lawson, R. C. Francis, V. N. Agostini. 2003. Tracking environmental processes in the coastal zone for understanding and predicting Oregon coho (Oncorhynchus kisutch) marine survival. Fisheries Oceanography, 12:554-568.
Moore, S. E., J. M. Grebmeier, J. R. Davies. 2003. Gray whale distribution relative to forage habitat in the northern Bering Sea: current conditions and retrospective summary. Canadian Journal of Zoology, 81:734-742.
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Nash, C. E., F. W. Waknitz. 2003. Interactions of Atlantic salmon in the Pacific Northwest: I. Salmon enhancement and the net-pen farming industry. Fisheries Research, 62:237-254.
Payne, J. F., A. Mathieu, T. K. Collier. 2003. Ecotoxicological studies focusing on marine and freshwater fish. Pages 191-224 in Douben, P. E. (Ed.) PAHs: An Ecotoxicological Perspective. John Wiley.
Roberts, C. M., G. Branch, R. H. Bustamante, J. C. Castilla, J. Dugan, B. S. Halpern, K. D. Lafferty, H. Leslie, J. Lubchenco, D. McArdle, M. H. Ruckelshaus, R. R. Warner. 2003. Application of ecological criteria in selecting marine reserves and developing reserve networks. Ecological Applications, 13:S215-228.
Roberts, C. M., S. Andelman, G. Branch, R. H. Bustamante, J. C. Castilla, J. Dugan, B. S. Halpern, K. D. Lafferty, H. Leslie, J. Lubchenco, D. McArdle, H. P. Possingham, M. H. Ruckelshaus, R. R. Warner. 2003. Ecological criteria for evaluating candidate sites for marine reserves. Ecological Applications (Suppl.), 13(1 ):S199-S214.
Ruckelshaus, M. H., P. McElhany, M. J. Ford. 2003. Recovering species of conservation concern: Are populations expendable? Pages 305-329 in Kareiva, P., S. A. Levin. (Eds.) The importance of species : perspectives on expendability and triage. Princeton University Press.
Sanderson, B. L., E. A. Steel, T. J. Beechie, G. R. Pess, M. B. Sheer, C. A. Campbell. 2003. Analyses for Phase I recovery planning: setting recovery goals. Pages 18-39 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: an integrated assessment approach for salmon habitat. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.
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Steel, E. A., L. Johnston, B. E. Feist, G. R. Pess, R. E. Bilby, D. Jensen, T. J. Beechie, J. M. Myers. 2003. Pacific salmon recovery planning and the Salmonid Watershed Analysis Model (SWAM): a broad-scale tool for assisting in the development of habitat recovery plans. Endangered Species Update, 20(1):3-15.
Waknitz, F. W., R. N. Iwamoto, M. S. Strom. 2003. Interactions of Atlantic salmon in the Pacific Northwest: IV. Impacts on the local ecosystems. Fisheries Research, 62:307-328.
Waknitz, F. W. 2003. U.S. salmon-farming sanctions could also hurt commercial fishing. Global Aquaculture Advocate, April 2003:19-20.
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Good, T. P. 2002. Breeding success in the Western Gull x Glaucous-winged Gull complex: The influence of habitat and nest site characteristics. Condor, 104:353-365.
Good, T. P., J. Fabbri. 2002. Catastrophic risk assessment of Lower Columbia and Willamette River ESUs of threatened Pacific salmon. In Appendix L in Willamette/Lower Columbia Pacific salmonid viability criteria. Willamette/Lower Columbia Technical Recovery Team Report (P. McElhany et al.), December 2, 2002.
Hard, J. J. 2002. Genetic risks of hatchery salmon production to wild salmon. Pages 72-85 in Orr, C., R. Routledge, P. Gallaugher. (Eds.) Hatcheries and the protection of wild salmon. Speaking for the Salmon workshop proceedings. Centre for Coastal Studies and Continuing Studies in Science at Simon Fraser University, Burnaby, B.C.
Hard, J. J. 2002. Inbreeding. Pages 96-110 in Berejikian, B. A. (Ed.) Research on captive broodstock technology for Pacific salmon. Annual Report to Bonneville Power Administration, Project No. 93-56 (Contract No. 00005227).
Hard, J. J. 2002. Update on the status of pink salmon in the Pacific Northwest. Pages 47-51 in Neely, K., O. W. Johnson, K. W. Myers, J. J. Hard. (rapporteurs) Proceedings of the 20th Northeast Pacific Pink and Chum Workshop, Seattle, Washington.
Johnson, J. B. 2002. Divergent Life Histories Among Populations of the Fish Brachyrhaphis Rhabdophora: Detecting Putative Agents of Selection by Candidate Model Analysis. Oikos, 96:82-91.
Johnson, J. B. 2002. Evolution after the flood: Phylogeography of the desert fish Utah chub. Evolution, 56:948-960.
Levin, P. S., J. A. Coyer, R. Petrik, T. P. Good. 2002. Community-wide effects of non-indigenous species on temperate reefs. Ecology, 83:3182-3193.
Mace, P. M., A. W. Bruckner, N. K. Daves, J. D. Field, J. R. Hunter, N. E. Kohler, R. G. Kope, S. S. Lieberman, M. Miller, J. W. Orr, R. S. Otto, T. Smith, N. B. Thompson, J. Lyke, A. G. Blundell. 2002. NMFS / Interagency Working Group Evaluation of CITES Criteria and Guidelines. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/SPO-58, 70 p.
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Moore, S. E., W. A. Watkins, M. A. Daher, J. R. Davies, M. E. Dahlheim. 2002. Blue Whale Habitat Associations in the Northwest Pacific: analysis of remotely-sensed data using a Geographic Information System. Oceanography, 15(3):20-25.
Neely, K., O. W. Johnson, K. W. Myers, J. J. Hard. (rapporteurs) 2002. Proceedings of the 20th Northeast Pacific Pink and Chum Workshop, Seattle, Washington. 167 p.
Peek, J. M., M. S. Boyce, E. O. Garton, J. J. Hard, L. S. Mills. 2002. Risks involved in current management of elk in Washington. Final report to Washington Department of Fish and Wildlife and Washington Wildlife Commission, Olympia, Washington, 99 p.
Ruckelshaus, M. H., K. Currens, R. Fuerstenberg, W. Graeber, K. Rawson, N. J. Sands, K. J. Scott. 2002. Planning ranges and preliminary guidelines for the delisting and recovery of the Puget Sound Chinook salmon Evolutionarily Significant Unit. Puget Sound Technical Recovery Team.
Ruckelshaus, M. H., P. S. Levin, J. B. Johnson, P. Kareiva. 2002. The Pacific salmon wars: what science brings to the challenge of recovering species. Annual Review of Ecology and Systematics, 33:665-706.
Waknitz, F. W. 2002. Farms first, hatcheries next? Alaska Fisherman's Journal, Sept 2002:4.
Waknitz, F. W., T. J. Tynan, C. E. Nash, R. N. Iwamoto, L. G. Rutter. 2002. Review of Potential Impacts of Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon Evolutionarily Significant Units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-53, 83 p. (PDF | HTML)
Wang, S. Z., J. J. Hard, F. Utter. 2002. Genetic variation and fitness in salmonids. Conservation Genetics, 3:321-333.
Weitkamp, L. A., K. Neely. 2002. Coho salmon (Oncorhynchus kisutch) ocean migration patterns: insight from marine coded-wire tag recoveries. Canadian Journal of Fisheries and Aquatic Sciences, 59:1100-1115.
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Bottom, D. L., C. A. Simenstad, A. M. Baptista, D. A. Jay, J. Burke, K. K. Jones, E. Casillas, M. H. Schiewe. 2001. Salmon at river's end: the role of the estuary in the decline and recovery of Columbia River salmon. Report to the U.S. Department of Energy, Bonneville Power Administration, Contract 98-AI06603, 255 p. plus appendix.
Fuss, H., C. Sharpe, P. Hulett, M. J. Ford, J. J. Hard, E. LaHood. 2001. Differences in natural production between hatchery and wild coho salmon in Minter Creek, Washington. Annual report to the Hatchery Science Review Group, June, 2001..
Gustafson, R. G., R. S. Waples, S. T. Kalinowski, G. A. Winans. 2001. Evolution of sockeye salmon ecotypes. Science, 291:251-252.
Hard, J. J. 2001. Inbreeding. Pages 86-94 in Berejikian, B. A., C. E. Nash. (Eds.) Research on captive broodstock technology for Pacific salmon. Annual Report to Bonneville Power Administration, Project No. 93-56 (Contract No. 00005227).
Johnson, J. B. 2001. Adaptive Life-History Evolution in the Livebearing Fish Brachyrhaphis Rhabdophora: Genetic Basis for Parallel Divergence in Age and Size at Maturity and a Test of Predator- Induced Plasticity. Evolution, 55:1486-1491.
Johnson, J. B. 2001. Hierarchical Organization of Genetic Variation in the Costa Rican Livebearing Fish Brachyrhaphis Rhabdophora (Poeciliidae). Biological Journal of the Linnean Society, 72:519-527.
Johnson, O. W., A. M. Garrett, W. S. Grant, K. Neely, M. H. Ruckelshaus, F. W. Waknitz, J. J. Hard. 2001. Summary of status review of coastal cutthroat trout from the Pacific northwest. Pages 255-257 in Brewin, M. K., A. J. Paul, M. Monita. (Eds.) Bull trout II conference proceedings. Trout Unlimited Canada, Calgary, Alberta.
Kope, R. G. 2001. Pacific Salmon Fisheries. In Steele, J. H., K. K. Turekian, S. A. Thorpe. (Eds.) Encyclopedia of Ocean Sciences. Academic Press, London.
Mathisen, O. A., N. J. Sands. 2001. Density-dependent ocean growth of some Bristol Bay sockeye salmon stocks. Pages 349-362 in Spatial processes and management of fish populations: Proceedings of the 17th Lowell Wakefield Fisheries Symposium, October 27-30, 1999. University of Alaska Sea Grant College Program Report No. 01-02, Anchorage, Alaska.
McClure, M. M., T. Cooney, M. Marvier. 2001. Assessing the role of dams in salmon recovery. Hydro-Review, 20:36?45.
Myers, J. M., W. K. Hershberger, A. M. Saxton, R. N. Iwamoto. 2001. Estimates of genetic and phenotypic parameters for length and weight of marine net-pen reared coho salmon (Onchorhynchus kisutch Walbaum). Aquaculture Research, 32:277-285.
Myers, J. M., P. O. Heggelund, G. Hudson, R. N. Iwamoto. 2001. Genetics and broodstock management of coho salmon. Aquaculture, 197:43-62.
Nash, C. E., K. M. Brooks, W. T. Fairgrieve, R. N. Iwamoto, C. V. Mahnken, M. B. Rust, M. S. Strom, F. W. Waknitz. 2001. The net-pen salmon farming industry in the Pacific Northwest. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-49, 125 p. (PDF | HTML)
Ruckelshaus, M. H., e. al. 2001. Independent populations of chinook salmon in Puget Sound. Puget Sound Technical Recovery Team Report, 92 p.
Stout, H. A., B. B. McCain, R. D. Vetter, T. L. Builder, W. H. Lenarz, L. L. Johnson, R. D. Methot. 2001. Status Review of Copper Rockfish (Sebastes caurinus), Quillback Rockfish (S. maliger), and Brown Rockfish (S. auriculatus) in Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-46, xxiv, 158 p.
Stout, H. A., R. G. Gustafson, W. H. Lenarz, B. B. McCain, D. M. Van Doornik, T. L. Builder, R. D. Methot. 2001. Status review of Pacific herring in Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-45, 175 p.
Wang, S. Z., J. J. Hard, F. Utter. 2001. Salmonid inbreeding: a review. Reviews in Fish Biology and Fisheries, 11:301-319.
Waples, R. S., R. G. Gustafson, L. A. Weitkamp, J. M. Myers, O. W. Johnson, P. J. Busby, J. J. Hard, G. J. Bryant, F. W. Waknitz, K. Neely, D. J. Teel, W. S. Grant, G. A. Winans, S. Phelps, A. R. Marshall, B. M. Baker. 2001. Characterizing Diversity in Salmon From the Pacific Northwest. Journal of Fish Biology, 59(Suppl. A):1-41.
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2000
Gustafson, R. G., W. H. Lenarz, B. B. McCain, C. C. Schmitt, W. S. Grant, T. L. Builder, R. D. Methot. 2000. Status review of Pacific hake, Pacific cod, and walleye pollock from Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-44, 275 p.
Hard, J. J., R. G. Kope, W. S. Grant. 2000. Endangered Species Act review of the status of pink salmon from Washington, Oregon, and California. Pages 103-110 in Knudsen, E. E., C. R. Steward, D. D. MacDonald, J. E. Williams, D. W. Reiser. (Eds.) Sustainable Fisheries Management: Pacific Salmon. Lewis Publishers, Boca Raton, FL.
Hard, J. J., B. A. Berejikian, E. P. Tezak, S. L. Schroder, C. M. Knudsen, L. T. Parker. 2000. Evidence for morphometric differentiation of wild and captively reared adult coho salmon (Oncorhynchus kisutch Walbaum): a geometric analysis. Environmental Biology of Fishes, 58:61-73.
Hard, J. J. 2000. Genetic interactions between wild and cultured salmon. Pages 8-18 in Gallaugher, P., C. Orr. (Eds.) Aquaculture and the protection of wild salmon. Speaking for the Salmon workshop proceedings. Continuing Studies in Science at Simon Fraser University, Burnaby, B.C.
Hard, J. J., L. Connell, W. K. Hershberger, L. W. Harrell. 2000. Genetic variation in mortality of chinook salmon (Oncorhynchus tshawytscha) during a bloom of the marine alga Heterosigma akashiwo. Journal of Fish Biology, 56:1387-1397.
Hard, J. J. 2000. Inbreeding. In Berejikian, B. A. (Ed.) Research on captive broodstock programs for Pacific salmon. Report to Bonneville Power Administration, Contract No. 1999A117859, Proj. No. 199305600 (BPA Report DOE/BP-17859-1), June 2000.
Hard, J. J., W. K. Hershberger. 2000. Research on quantitative genetic consequences of captive broodstock programs for Pacific salmon populations. In Research on captive broodstock technology for Pacific salmon. Annual Report to Bonneville Power Administration, Project No. 93-56 (Contract No. DE-AI79-93BP55064).
McElhany, P., M. H. Ruckelshaus, M. J. Ford, T. C. Wainwright, E. P. Bjorkstedt. 2000. Viable salmon populations and the recovery of evolutionarily significant units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-42, 156 p.
Myers, J. M., R. N. Iwamoto, D. J. Teel, D. M. Van Doornik, W. K. Hershberger. 2000. Coho salmon broodstock development---1977 to 1998. Ten generations of systematic selective breeding. Bulletin of National Research Institute of Aquaculture, Supplement, 1:63-70.
Weitkamp, L. A., T. C. Wainwright, G. J. Bryant, D. J. Teel, R. G. Kope. 2000. Review of the status of coho salmon from Washington, Oregon, and California. Pages 111-118 in Knudsen, E. E., C. R. Steward, D. D. MacDonald, J. E. Williams, D. W. Reiser. (Eds.) Sustainable Fisheries Management: Pacific Salmon. Lewis Publishers, Boca Raton, FL.
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1999
Bergstrom, C. T., P. McElhany, L. Real. 1999. Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens. Proceedings of the National Academy of Sciences, USA, 96:5095-5100.
Gustafson, R. G., G. A. Winans. 1999. Distribution and population genetic structure of river-/sea-type sockeye salmon in western North America. Ecology of Freshwater Fish, 8:181-193.
Hard, J. J., W. R. Heard. 1999. Analysis of straying variation in Atlantic hatchery chinook salmon (Oncorhynchus tshawytscha) following transplantation. Canadian Journal of Fisheries and Aquatic Sciences, 56:578-589.
Hard, J. J., G. A. Winans, J. C. Richardson. 1999. Phenotypic and genetic architecture of juvenile morphometry in chinook salmon. Journal of Heredity, 90(6):597-606.
Hard, J. J. 1999. Status review of pink salmon in the Pacific Northwest. Pages 166-173 in Hawkins, S. (rapporteur) Proceedings of the 19th Northeast Pacific pink and chum salmon workshop.
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. 1999. Status review of coastal cutthroat trout from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-37, 292 p. (PDF | HTML)
Kareiva, P., S. Andelman, D. Doak, B. Elderd, M. Groom, J. M. Hoekstra, L. Hood, F. James, J. Lamoreux, G. LeBuhn, C. McCulloch, J. Regetz, L. Savage, M. H. Ruckelshaus, D. Skelly, H. Wilbur, K. Zamudio, E. Aas. 1999. Using science in habitat conservation plans. American Institute of Biological Sciences, Washington, D.C., vi, 97 p.
Kope, R. G. 1999. Pacific Coast Salmon. Pages 149-155 in Our Living Oceans: Report on the status of U. S. living marine resources. U.S. Dept. Commerce, NOAA Tech. Memo. NMFS-F/SPO-41, 301 p.
Ruckelshaus, M. H., C. Hartway, P. Kareiva. 1999. Dispersal and landscape errors in spatially explicit population models: a reply. Conservation Biology, 13:1223-1224.
Sarder, M. R., D. J. Penman, J. M. Myers, B. J. McAndrew. 1999. Production and propagation of fully inbred clonal lines in the Nile tilapia (Oreochromis niloticus L.). Journal of Experimental Zoology, 284:675-685.
Wainwright, T. C., R. G. Kope. 1999. Methods of extinction risk assessment developed for U.S. West Coast salmon. ICES Journal of Marine Science, 56:444-448.
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1998
Gustafson, R. G., R. D. Turner, R. A. Lutz, R. C. Vrijenhoek. 1998. A new genus and five new species of mussels (Bivalvia, Mytilidae) from deep-sea sulfide/hydrocarbon seeps in the Gulf of Mexico. Malacologia, 40(1-2):63-112.
Hoeh, W. R., M. B. Black, R. G. Gustafson, A. E. Bogan, R. A. Lutz, R. C. Vrijenhoek. 1998. Testing alternative hypotheses of Neotrigonia (Bivalvia : Trigonioida) phylogenetic relationships using cytochrome C oxidase subunit I DNA sequences. Malacologia, 40:267-278.
Kope, R. G., T. C. Wainwright. 1998. Trends in the status of Pacific salmon populations in Washington Oregon, California, and Idaho. North Pacific Anadromous Fish Commission Bulletin, 1:1-12.
Mahnken, C. V., G. Ruggerone, F. W. Waknitz, T. A. Flagg. 1998. A historical perspective on salmonid production from Pacific Rim hatcheries. North Pacific Anadromous Fish Commission Bulletin, 1:38?53.
Myers, J. M., R. G. Kope, G. J. Bryant, D. J. Teel, L. J. Lierheimer, T. C. Wainwright, W. S. Grant, F. W. Waknitz, K. Neely, S. Lindley, R. S. Waples. 1998. Status review of Chinook salmon from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-35, 443 p. (PDF | HTML)
Nickelson, T. E., P. W. Lawson. 1998. Population viability of coho salmon, Oncorhynchus kisutch, in Oregon coastal basins: application of a habitat-based life cycle model. Canadian Journal of Fisheries and Aquatic Sciences, 55(11):2383-2392.
Ruckelshaus, M. H., C. Hays, P. Fiedler, P. Kareiva. 1998. Conservation of species in the sea. Pages 112-156 in Conservation Biology for the Coming Decade. Chapman and Hall, New York.
Ruckelshaus, M. H. 1998. Spatial scale of genetic structure and an indirect estimate of gene flow in eelgrass, Zostera marina. Evolution, 52:330-343.
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1997
Berejikian, B. A., E. P. Tezak, S. L. Schroder, C. M. Knudsen, J. J. Hard. 1997. Reproductive behavioral interactions between wild and captively reared coho salmon (Oncorhynchus kisutch). ICES Journal of Marine Science, 54:1040-1050.
Bradshaw, W. E., C. M. Holzapfel, C. A. Kleckner, J. J. Hard. 1997. Heritability of development time and protandry in the pitcher-plant mosquito, Wyeomyia smithii. Ecology, 78:969-976.
Bushek, D., S. K. Allen, K. A. Alcox, R. G. Gustafson, S. E. Ford. 1997. Response of Crassostrea virginica to in vitro cultured Perkinsus marinus: Preliminary comparisons of three inoculation methods. Journal of Shellfish Research, 16:479-485.
Carlton, J. C., M. H. Ruckelshaus. 1997. Non-indigenous marine and estuarine invertebrates and plants of Florida. Pages 187-204 in Simberloff, D., T. Brown, D. Schmitz. (Eds.) Non-Indigenous Species in Florida: Patterns, Effects and Management. Island Press, Washington, D. C.
Gustafson, R. G., T. C. Wainwright, G. A. Winans, F. W. Waknitz, L. T. Parker, R. S. Waples. 1997. Status review of sockeye salmon from Washington and Oregon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-33, 282 p. (PDF | HTML)
Johnson, O. W., W. S. Grant, R. G. Kope, K. Neely, F. W. Waknitz, R. S. Waples. 1997. Status review of chum salmon from Washington, Idaho. Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-32, 280 p. (PDF | HTML)
Johnson, O. W., R. S. Waples, T. C. Wainwright, K. Neely, F. W. Waknitz, L. T. Parker. 1997. Summary of the biological status review of Umpqua River sea-run cutthroat trout. Pages 87-102 in Hall, J. R. (Ed.) Sea-Run Cutthroat Trout: Biology, Management, and Future Conservation, proceedings of a symposium. Reedsport, OR, Oct. 12-14, 1995. Oregon Chapter, American Fisheries Society, Corvallis, Oregon.
Kareiva, P., D. Skelly, M. H. Ruckelshaus. 1997. Re-evaluating the use of models to predict the consequences of habitat loss and fragmentation. Pages 156-166 in Pickett, S. T., R. Ostfeld, M. Shachak, G. Likens. (Eds.) The Ecological Basis of Conservation: Heterogeneity, Ecosystems and Biodiversity. Chapman and Hall, NY.
Lawson, P. W. 1997. Interannual variability in growth and survival of chinook and coho salmon. In Emmett, R. L., M. H. Schiewe. (Eds.) Estuarine and ocean survival of Northeastern Pacific salmon: Proceedings of the workshop. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-NWFSC-219.
Ruckelshaus, M. H., C. Hartway, P. Kareiva. 1997. Assessing the data requirements of spatially explicit dispersal models. Conservation Biology, 11:1298-1306.
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1996
Achord, S., G. M. Matthews, O. W. Johnson, D. M. Marsh. 1996. Use of passive integrated transponder (PIT) tags to monitor migration timing of Snake River chinook salmon smolts. North American Journal of Fisheries Management, 16:302-313.
Busby, P. J., T. C. Wainwright, G. J. Bryant, L. J. Lierheimer, R. S. Waples, F. W. Waknitz, I. V. Lagomarsino. 1996. Status Review of West Coast Steelhead from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-27, 261 p. (PDF | HTML)
Hard, J. J., W. K. Hershberger. et al 1996. Research on quantitative genetic consequences of captive broodstock programs for Pacific salmon populations. Pages 8-1 to 8-28 in Swanson, P. (Ed.) Research on Captive Broodstock Technology for Pacific Salmon. Annual Report 1995. BPA Report DOE/BP-55064. Bonneville Power Administration, Portland, Oregon.
Hard, J. J., R. G. Kope, W. S. Grant, F. W. Waknitz, L. T. Parker, R. S. Waples. 1996. Status review of pink salmon from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-25, 131 p. (PDF | HTML)
Maynard, D. J., D. A. Frost, F. W. Waknitz, E. F. Prentice. 1996. Vulnerability of marked age-0 steelhead to a visual predator. Transactions of the American Fisheries Society, 125:330-333.
Ruckelshaus, M. H. 1996. Estimates of genetic neighborhood parameters from pollen and seed dispersal distributions in a marine angiosperm (Zostera marina L. ). Evolution, 50:856-864.
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1995
Berejikian, B. A., E. P. Tezak, L. K. Park, S. L. Schroder, C. M. Knudsen, J. J. Hard. 1995. Reproductive success of captively reared and wild coho salmon (Oncorhynchus kisutch). In Swanson, P. (Ed.) Captive broodstock evaluation. Report to Bonneville Power Administration, Contract DE-AI79-93BP55064.
Flagg, T. A., F. W. Waknitz, D. J. Maynard, G. B. Milner, C. V. Mahnken. 1995. Impact of hatcheries on native coho salmon populations in the lower Columbia River. American Fisheries Society Symposium, 15:366-375.
Flagg, T. A., F. W. Waknitz, D. J. Maynard, G. B. Milner, C. V. Mahnken. 1995. The effect of hatcheries on native coho salmon populations in the lower Columbia River. Pages 366-375 in Schramm, H. L. Jr., R. G. Piper. (Eds.) Uses and effects of cultured fishes in aquatic ecosystems. American Fisheries Society, Bethesda, MD.
Hard, J. J. 1995. A quantitative genetic perspective on the conservation of intraspecific diversity. American Fisheries Society Symposium, 17:304-326.
Hard, J. J. 1995. Genetic monitoring of life-history characters in salmon supplementation: problems and opportunities. American Fisheries Society Symposium, 15:212-225.
Hard, J. J., W. K. Hershberger. 1995. Quantitative genetic consequences of captive broodstock programs for anadromous Pacific salmon (Oncorhynchus spp.). Pages 2-1 to 2-75 in An assessment of the status of captive broodstock technology for Pacific salmon. Final Report to Bonneville Power Admin., Proj. No. 93-56, Contract No. DE-AI79-93BP55064, June 1995.
Hard, J. J. 1995. Science, education, and the fisheries scientist. Fisheries, 20(3):10-16.
Ruckelshaus, M. H. 1995. Estimates of the mating system and of inbreeding depression in a population of the marine angiosperm Zostera marina L. Marine Biology, 123:583-593.
Stuehrenberg, L. C., D. Smith, O. W. Johnson. 1995. Evaluation of factors affecting collection efficiency estimates of chinook salmon and steelhead smolts at McNary Dam, 1989. Final Report to the Bonneville Power Administration, Contract DE-AI79- 88BP1024, 25 p.
Swanson, P., T. A. Flagg, J. J. Hard, L. W. Harrell, K. D. Shearer, R. J. Pascho, W. K. Hershberger, K. C. Massee, R. W. Hardy. 1995. Research on Captive Broodstock Technology for Pacific Salmon, Annual Report 1995. Report to the Bonneville Power Administration, Contract 1993BP55064, Project No. 199305600, 220 p. (BPA Report DOE/BP-55064-2)
Waknitz, F. W., G. M. Matthews, T. C. Wainwright, G. A. Winans. 1995. Status review for mid- Columbia River summer chinook salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-22, 80 p.
Weitkamp, L. A., T. C. Wainwright, G. J. Bryant, G. B. Milner, D. J. Teel, R. G. Kope, R. S. Waples. 1995. Status review of coho salmon from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-24, 258 p. (PDF | HTML)
Wennergren, U., M. H. Ruckelshaus, P. Kareiva. 1995. The promise and limitations of spatial models in conservation biology. Oikos, 74:349-356.
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1994
Hard, J. J. 1994. Genetics and salmon management: Expanded summary of a panel discussion. Pages 151-163 in Application of DNA technology to the management of Pacific salmon. NOAA Tech. Memo. NMFS-NWFSC-17.
Johnson, O. W., R. S. Waples, T. C. Wainwright, K. Neely, F. W. Waknitz, L. T. Parker. 1994. Status review for Oregon's Umpqua River sea-run cutthroat trout. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-15, 122 p.
Prentice, E. F., D. J. Maynard, S. L. Downing, D. A. Frost, M. S. Kellett, D. A. Bruland, P. Sparks-Mcconkey, F. W. Waknitz, R. N. Iwamoto, K. W. McIntyre, N. N. Paasch. 1994. A study to determine the biological feasibility of a new fish tagging system (1990-93). Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 250 p.
Ruckelshaus, M. H. 1994. Ecological and genetic factors affecting population structure in the marine angiosperm, Zostera marina L. Ph. D University of Washington, Seattle, WA, v, 207 p.
Ruckelshaus, M. H. 1994. The importance of ecological and genetic attributes of marine plant populations to restoration of nearshore habitats. In Wyllie-Echeverria, T., A. M. Olson, M. J. Hershman. (Eds.) Seagrass Science and Policy in the Pacific Northwest. EPA 910/R-94-004.
Schemske, D. W., B. C. Husband, M. H. Ruckelshaus, C. Goodwillie, I. M. Parker, J. G. Bishop. 1994. Establishing priorities in plant conservation. Ecology, 75:584-606.
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1993
Busby, P. J., O. W. Johnson, T. C. Wainwright, F. W. Waknitz, R. S. Waples. 1993. Status review for Oregon's Illinois River winter steelhead. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-10, 85 p.
Johnson, O. W., D. J. Maynard, G. B. Milner, F. W. Waknitz. 1993. Genetic considerations in the status review of lower Columbia River coho salmon. Pages 161-181 in Coho Salmon Workshop. Coast Bastion Inn, Nanamio, British Columbia.
Prentice, E. F., D. J. Maynard, P. Sparks-Mcconkey, C. S. McCutcheon, D. Neff, W. Steffens, F. W. Waknitz, A. L. Jensen, L. C. Stuehrenberg, S. L. Downing, B. P. Sandford, T. W. Newcomb. 1993. A study to determine the biological feasibility of a new fish tagging system. Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 182 p.
Ruckelshaus, M. H., R. C. Wissmar, C. A. Simenstad. 1993. The importance of autotroph distribution to mussel growth in a well-mixed, temperate estuary. Estuaries, 16:898-912.
Waples, R. S., O. W. Johnson, P. B. Aebersold, C. K. Shiflett, D. M. Van Doornik, D. J. Teel, A. E. Cook. 1993. A genetic monitoring and evaluation program for supplemented populations of salmon and steelhead in the Snake River basin. Annual Report of Research to the Bonneville Power Administration, Portland, Oregon, Contract DE-A179-89BP00911, Project No. 89-096.
Williams, S. L., M. H. Ruckelshaus. 1993. Effects of nitrogen availability and herbivory on the interaction between eelgrass (Zostera marina L. ) and epiphytes. Ecology, 74:904-918.
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1992
Cox, P. A., R. H. Laushman, M. H. Ruckelshaus. 1992. Surface and submarine pollination in the seagrass Zostera marina L. Botanical Journal of the Linnean Society, 109:281-291.
Hard, J. J., R. P. Jones Jr., R. S. Waples. 1992. Pacific Salmon and Artificial Propagation Under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-2.
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1991
Johnson, O. W., T. A. Flagg, D. J. Maynard, G. B. Milner, F. W. Waknitz. 1991. Status review for lower Columbia River coho salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-202, 94 p. (Complete Article (PDF) | Summary (HTML))
Waples, R. S., O. W. Johnson. 1991. Status Review for Snake River Sockeye Salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-195.
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1990
Ruckelshaus, M. H., R. C. Wissmar, C. A. Simenstad. 1990. Sources and Fates of organic matter: utilization of eelgrass carbon by estuarine bivalves. Pages 13-20 in Merkel, K. W., R. S. Hoffman. (Eds.) Proc. Calif. Eelgrass Symp. Sweetwater River Press, CA.
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1989
Dickhoff, W. W., C. V. Mahnken, F. W. Waknitz, W. S. Zaugg, M. G. Bernard, C. V. Sullivan. 1989. Effect of temperature and feeding on smolting and seawater survival of Atlantic salmon (Salmo salar). Aquaculture, 82:93-102.
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1988
Ruckelshaus, M. H., R. C. Wissmar, C. A. Simenstad. 1988. Mussel growth and estuarine habitat quality. Pages 463-472 in Proc. First Annual Meeting Puget Sound Research. Vol. I. Puget Sound Water Quality Authority, WA.
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1986
Johnson, O. W., W. W. Dickhoff, F. Utter. 1986. Comparative growth and development of diploid and triploid coho salmon Oncorhynchus kisutch. Aquaculture, 57:329-336.
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1982
Folmar, L. C., W. W. Dickhoff, C. V. Mahnken, F. W. Waknitz. 1982. Stunting and parr-reversion during smoltification of coho salmon (Oncorhynchus kisutch). Aquaculture, 28:91-104.
Gorbman, A., W. W. Dickhoff, J. L. Mighell, E. F. Prentice, F. W. Waknitz. 1982. Morphological indices of developmental progress in the parr-smolt coho salmon, Oncorhynchus kisutch. Aquaculture, 28:1-20.
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