Journal Article

In press

Chittaro, P. M., I. C. Kaplan, A. A. Keller, P. S. Levin. In press. Trade-offs between species conservation and the size of marine protected areas. Conservation Biology.

Jorda, M. J., J. A. Barth, M. E. Clarke, W. W. Wakefield. In press. Groundfish Species Associations with Distinct Oceanographic Habitats off the Pacific Northwest Coast. Fisheries Oceanography.

Keller, A. A., V. H. Simon, W. W. Wakefield, M. E. Clarke, D. J. Kamikawa, E. L. Fruh. In press. Demersal Fish And Invertebrate Biomass in Relation To An Offshore Hypoxic Zone Along The U.S. West Coast. Fisheries Oceanography.

Lavery, A. C., D. Chu, J. Moum. In press. Discrimination of scattering from zooplankton and oceanic microstructure using a broadband echosounder. ICES Journal of Marine Science.

Stanton, T. K., D. Chu, J. M. Jech, J. D. Irish. In press. Resonance classification and high-resolution imagery of swimbladder-bearing fish using a broadband echosounder. ICES Journal of Marine Science.

Stewart, I. J., A. Keller, E. L. Fruh, V. Simon, B. H. Horness. In press. Throwing In The Towel: When Do Adverse Conditions Dictate A Weather Day During A Bottom Trawl Survey? Fisheries Research.

2008

Amend, M.R., Yoklavich, M.M., Rzhanov, Y., Grimes, C.B., and Wakefield, W.W., 2007, Mosaics of benthic habitats using laser line scan technology: its in the details, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 61-69.

Copps, S.L., Yoklavich, M.M., Parkes, G.B., Wakefield, W.W., Bailey, A., Greene, H.G., Goldfinger, C., and Burn, R.W., 2007, Applying marine habitat data to fishery management on the U.S. west coast: Initiating a policy-science feedback loop, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 451-462.

Romsos, C., C. Goldfinger, R. Robison, R.L. Milstein, and W.W. Wakefield. 2007. Development of a regional seafloor surficial geologic habitat map for the continental margins of Oregon and Washington, USA. In B.J. Todd and H.G. Greene, eds., Mapping the Seafloor for Habitat Characterization. Geological Association of Canada, Special Paper 47, p. 219-243.

Stoner, A.W., C.H. Ryer, S.J. Parker, P.J. Auster, W.W. Wakefield. 2008. Evaluating the role of fish behavior in surveys conducted with underwater vehicles. Canadian Journal of Fisheries and Aquatic Sciences 65:1230-1243.

2007

Whitmire, C.E., Embley, R.W., Wakefield, W.W., Merle, S.G., and Tissot, B.N., 2007, A quantitative approach for using multibeam sonar data to map benthic habitats, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 111-126

2006

Chu, D., L. C. Hufnagle Jr. 2006. Time varying gain (TVG) measurements of a multibeam echo sounder for applications to quantitative acoustics. Proceedings MTS/IEEE Oceans 2006.

2005

Cook, M. A., K. Guthrie, M. B. Rust, P. D. Plesha. 2005. Effects of salinity and temperature during incubation on hatching and development of lingcod Ophiodon elongatus Girard, embryos. Aquaculture Research, 36(13):1298-1303.

Foote, K. G., D. Chu, T. R. Hammar, K. C. Baldwin, L. A. Mayer, L. C. Hufnagle Jr., J. M. Jech. 2005. Protocols for calibrating multibeam sonar. Acoustical Society of America, (117)2013-2027.

Jech, J. M., K. G. Foote, D. Chu, L. C. Hufnagle Jr. 2005. Comparing two 38-kHz scientific echo sounders. ICES Journal of Marine Science, 62:1168-1179.

Ressler, P. H., R. D. Brodeur, W. T. Peterson, S. K. Pierce, P. M. Vance, A. R. Rostad, J. A. Barth. 2005. The spatial distribution of euphausiid aggregations in the northern California Current during August 2000. Deep Sea Research Part II: Topical Studies in Oceanography, 52(1-2):89-108.

2004

Bosley, K. L., J. W. Lavelle, R. D. Brodeur, W. W. Wakefield, R. L. Emmett, E. T. Baker, K. M. Rehmke. 2004. Biological and Physical Processes in and around Astoria Submarine Canyon, Oregon, U.S.A. Journal of Marine Systems, 50:21-37.

Lauth, R. R., W. W. Wakefield, K. Smith. 2004. Estimating the density of thornyheads, Sebastolobus spp., using a towed video camera sled. Fisheries Research, 70:39-48.

Lauth, R. R., J. N. Ianelli, W. W. Wakefield. 2004. Estimating the size selectivity and catching efficiency of a survey bottom trawl for thornyheads, Sebastolobus spp., using a towed video camera sled. Fisheries Research, (70)27-37.

Witting, D. A., R. C. Chambers, K. L. Bosley, S. C. Wainright. 2004. Experimental evaluation of ontogenetic diet transitions in summer flounder (Paralichthys dentatus) using stable isotopes as dietary tracers. Canadian Journal of Fisheries and Aquatic Sciences, (61)2069-2084.

2003

Yoklavich, M. M., C. B. Grimes, W. W. Wakefield. 2003. Using laser line scan imaging technology to assess deepwater habitats in the Monterey Bay National Marine Sanctuary. Marine Technology Society Journal, 37(1):18-26.

2002

Bosley, K. L., D. A. Witting, R. C. Chambers, S. C. Wainright. 2002. Estimating turnover rates of carbon and nitrogen in recently metamorphosed winter flounder Pseudopleuronectes americanus with stable isotopes. Marine Ecology Progress Series, 236:233-240.

Hannah, R. W., S. J. Parker, E. L. Fruh. 2002. Length and age at maturity of female petrale sole (Eopsetta jordani) determined from samples collected prior to spawning aggregation. Fishery Bulletin, 100:711-719.

Weinberg, J. R., P. J. Rago, W. W. Wakefield, C. Keith. 2002. Estimation of tow distance and spatial heterogeneity using data from inclinometer sensors: an example using a clam survey dredge. Fisheries Research, 55(1-3):49-61.

2001

Harms, J., G. Sylvia. 2001. A Comparison of Conservation Perspectives Between Scientists, Managers, and Industry in the West Coast Groundfish Fishery. Fisheries, 26:6-15.

2000

Guthrie, K., M. B. Rust, C. Langdon, F. T. Barrows. 2000. Acceptability of various microparticulate diets to first feeding walleye (Stizostedion vitrum) larvae. Aquaculture Nutrition, 6(3):153-158.

Weinstein, M. P., S. Y. Litvin, K. L. Bosley, C. M. Fuller, S. C. Wainright. 2000. The role of tidal salt marsh as an energy source for marine transient and resident finfishes: A stable isotope approach. Transactions of the American Fisheries Society, 129:797-810.

1999

Bosley, K. L., S. C. Wainright. 1999. The effects of preservatives and acidification on the stable isotope ratios (15N:14N, 13C:12C) of two species of marine animals. Canadian Journal of Fisheries and Aquatic Sciences, 56:2181-2185.

Hufnagle, L. C. Jr., S. E. Camarata, D. W. Ernest, C. A. Krone, S. Chan, M. M. Krahn. 1999. Development and application of a high-performance liquid chromatography screening method for aromatic compounds in invertebrate tissues. Archives of Environmental Contamination and Toxicology, 37:220-226.

Book

2008

Tissot, B.N., W.W. Wakefield, M.A. Hixon, and J.E.R. Clemons. In press. Twenty years of fish-habitat studies on Heceta Bank, Oregon. In J.R. Reynolds and H.G. Greene (eds), Marine Habitat Mapping Technology for Alaska, Alaska Sea Grant College Program, University of Alaska Fairbanks, doi:10.4027/mhmta.2008.15, 203-217.

Section

2006

Helser, T. E., I. J. Stewart, G. W. Fleischer, S. Martell. 2006. Stock Assessment of Pacific Hake. In Status of the Pacific Coast Groundfish Fishery through 2005, Stock Assessment and Fishery Evaluation: Stock Assessments and Rebuilding Analyses.

2005

Rust, M. B., K. C. Massee, P. D. Plesha, T. M. Scott, N. Ashton, L. Britt, M. A. Cook, K. Guthrie, R. Campbell, E. Kroeger. 2005. Aquaculture of lingcod. In Aquaculture in the 21st century. American Fisheries Society Symposium 46. American Fisheries Society, Bethesda, Maryland.

Wakefield, W. W., C. Whitmire, J. E. Clemons, B. N. Tissot. 2005. Fish habitat studies: Combining high-resolution geological and biological data. Pages 119-138 in Barnes, P. W., J. P. Thomas. (Eds.) Benthic habitats and the effects of fishing. American Fisheries Society, Symposium 41,, Bethesda, Maryland.

Ylitalo, G. M., G. K. Yanagida, L. C. Hufnagle Jr., M. M. Krahn. 2005. Determination of lipid classes and lipid content in tissues of aquatic organisms using a thin layer chromatography/flame ionization detection (TLC/FID) microlipid method. Pages 227-237 in Ostrander, G. K. (Ed.) Techniques in Aquatic Toxicology. CRC Press, Boca Raton, FL.

2004

Chu, D., K. G. Foote, T. R. Hammer, L. C. Hufnagle Jr., J. M. Jech. 2004. Calibrating a 90-kHz multibeam sonar: illustrating protocols. Pages 438-442 in Proceedings MTS/IEEE Oceans 2004.

Helser, T. E., R. D. Methot, G. W. Fleischer. 2004. Stock Assessment of Pacific Hake (Whiting) in U.S. and Canadian Waters in 2003. In Pacific Fishery Management Council, Appendix: Status of the Pacific Coast Groundfish Fishery Through 2004 and Stock Assessment and Fishery Evaluation. Pacific Fishery Management Council, 2130 SW Fifth Avenue, Suite 224, Portland, OR 97201.

2003

Chu, D., K. G. Foote, L. C. Hufnagle Jr., T. R. Hammar, P. Liberatore, K. C. Baldwin, L. A. Mayer, A. McLeod. 2003. Calibrating a 90-kHz multibeam sonar. In Proceedings MTS/IEEE Oceans 2003.

Jech, J. M., D. Chu, K. G. Foote, T. R. Hammar, L. C. Hufnagle Jr. 2003. Calibrating two scientific echo sounders. In Proceedings MTS/IEEE Oceans 2003.

2002

Chu, D., K. G. Foote, L. C. Hufnagle Jr. 2002. Measurement of multibeam sonar directivity patterns. In Proceedings MTS/IEEE Oceans 2002.

1996

Rogers, J. B., M. Wilkins, D. J. Kamikawa, F. Wallace, T. L. Builder, M. Zimmerman, M. Kander, B. Culver. 1996. Status of the remaining rockfish in the Sebastes complex in 1996 and recommendations for management in 1997. In Appendix E In Pacific Fishery Management Council Status of the Pacific coast groundfish fishery through 1996 and Recommended Acceptable Biological Catches for 1997. PFMC, 2130 SW Fifth Avenue, Suite 224,Portland, Oregon 97201.

Contract Report

1996

Marsh, D. M., J. R. Harmon, K. W. McIntyre, K. L. Thomas, N. N. Paasch, B. P. Sandford, D. J. Kamikawa, G. M. Matthews. 1996. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1995. Report to the U.S. Army Corps of Engineers, Walla Walla District, Contract DACW68-84-H-0034, 43 p. plus appendix.

1995

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1993. Report to the Bonneville Power Administration, Contract 91BP18800, Project No. 91-28, 88 p.

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the migrations of wild Snake River spring/summer chinook salmon smolts, 1994. Report to the Bonneville Power Administration, Contract DE-A179-91BP18800, Project No. 91-028, 100 p.

Achord, S., D. J. Kamikawa, B. P. Sandford, G. M. Matthews. 1995. Monitoring the smolt migrations of wild Snake River spring/summer chinook salmon smolts, 1993. Report to the Bonneville Power Administration, Contract 91BP18800, Project No. 91-28, 88 p.

Harmon, J. R., D. J. Kamikawa, B. P. Sandford, K. W. McIntyre, K. L. Thomas, N. N. Paasch, G. M. Matthews. 1995. Research related to transportation of juvenile salmonids on the Columbia and Snake Rivers, 1993. Report to the U.S. Army Corps of Engineers, Contract DACW68-84-H-0034, 37 p. plus appendices.

Muir, W. D., S. G. Smith, R. N. Iwamoto, D. J. Kamikawa, K. W. McIntyre, E. E. Hockersmith, B. P. Sandford, P. A. Ocker, T. E. Ruehle, J. G. Williams, J. R. Skalski. 1995. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1994. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 187 p.

1994

Achord, S., G. M. Matthews, D. M. Marsh, B. P. Sandford, D. J. Kamikawa. 1994. Monitoring the migrations of wild Snake River spring and summer chinook salmon smolts, 1992. Report to the Bonneville Power Administration, Contract DE-AI79-91BP18800, 73 p.

Technical Memorandum

2008

Fleischer, G. W., K. D. Cooke, P. H. Ressler, R. E. Thomas, S. de Blois, L. C. Hufnagle Jr. 2008. The 2005 integrated acoustic and trawl survey of Pacific hake, Merluccius productus, in U.S. and Canadian waters off the Pacific coast. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-94, 41 p.

Harms, J. H., J. A. Benante, R. M. Barnhart. 2008. The 2004-2007 hook and line survey of shelf rockfish in the Southern California Bight: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-95, 110 p.

Keller, A. A., B. H. Horness, E. L. Fruh, V. H. Simon, V. J. Tuttle, K. L. Bosley, J. C. Buchanan, D. J. Kamikawa, J. R. Wallace. 2008. The 2005 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-93, 136 p.

2007

Keller, A. A., V. H. Simon, B. H. Horness, J. R. Wallace, V. J. Tuttle, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. C. Buchanan. 2007. The 2003 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-86, 130 p.

Keller, A. A., B. H. Horness, V. H. Simon, V. J. Tuttle, J. R. Wallace, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. C. Buchanan. 2007. The 2004 U.S. West Coast bottom trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-87, 134 p.

2006

Keller, A. A., E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. R. Wallace, B. H. Horness, V. H. Simon, V. J. Tuttle. 2006. The 2001 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-72, 175 p.

Keller, A. A., B. H. Horness, V. J. Tuttle, J. R. Wallace, V. H. Simon, E. L. Fruh, K. L. Bosley, D. J. Kamikawa. 2006. The 2002 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-75, 189 p.

2005

Fleischer, G. W., K. D. Cooke, P. H. Ressler, R. Thomas, S. de Blois, L. C. Hufnagle Jr., A. R. Kronlund, J. A. Holmes, C. D. Wilson. 2005. The 2003 intergrated acoustic and trawl survey of Pacific hake, Merluccius productus, in U.S. and Canadian waters off the Pacific coast. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-65, 45 p.

Keller, A. A., T. L. Wick, E. L. Fruh, K. L. Bosley, D. J. Kamikawa, J. R. Wallace, B. H. Horness. 2005. The 2000 U.S. West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California: Estimates of distribution, abundance, and length composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-70, 163 p.

2002

Ramsey, T. B., T. A. Turk, E. L. Fruh, J. R. Wallace, B. H. Horness, A. J. Cook, K. L. Bosley, D. J. Kamikawa, L. C. Hufnagle Jr., K. Piner. 2002. The 1999 Northwest Fisheries Science Center Pacific West Coast upper continental slope trawl survey of groundfish resources off Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-55, 143 p.

2001

Turk, T. A., T. L. Builder, C. W. West, D. J. Kamikawa, J. R. Wallace, R. D. Methot, A. R. Bailey, K. L. Bosley, A. J. Cook, E. L. Fruh, B. H. Horness, K. Piner, H. R. Sanborn, W. W. Wakefield. 2001. The 1998 Northwest Fisheries Science Center Pacific West Coast Upper Continental Slope Trawl Survey of Groundfish Resources off Washington, Oregon, and California: Estimates of Distribution, Abundance, and Length Composition. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-50, 122 p.

Thesis

2002

Guthrie, K. 2002. Comparison of apparent digestibility coefficients of feeds for Atlantic Salmon (Salmo salar), sablefish (Anaplopoma fimbria), Lingcod (Ophiodon elongatus), brown rockfish (Sebastes auriculatus) and Pacific halibut (Hippoglossus stenolepsis). Thesis (M.S.) University of Washington, 122 p.

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