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In press
Beechie, T.J., D.A. Sear, J.D. Olden, G.R. Pess, J.M. Buffington, H. Moir, P. Roni, and M.M. Pollock. In press. Process-based principles for restoring dynamic river systems. BioScience.
Greene, C. M., G. R. Pess. In press. Multispecies modeling for salmon: alternatives, challenges, and opportunities. AFS Special Publication: Pacific Salmon Environment and Life History Models.
Greene, C. M. In press. Population Dynamics - Allee effects. Pages 123-127 in The Encyclopedia of Ecology. Elsevier, Oxford.
Roni, P., D. Van Slyke, B. A. Miller, J. L. Ebersole, G. R. Pess. In press. Adult coho salmon and steelhead use of boulder weirs in Southwest Oregon stream. North American Journal of Fisheries Management.
Roni, P., K. Hanson, T. J. Beechie. In press. Global review of the physical and biological effectiveness of stream habitat rehabiliataion techniques. North American Journal of Fisheries Management, 28:856-890.
Roni, P. In press. Monitoring salmon stream restoration: Guidelines based on experience in the American Pacific Northwest. Atlantic Salmon Trust, Winter Journal(2007/08).
Steel, E. A., P. McElhany, N. J. Yoder, M. D. Purser, k. Malone, B. E. Thompsen, K. A. Avery, D. Jensen, G. Blair, C. Busack, M. D. Bowen, J. Hubble, T. Kantz. In press. Making the best use of modeled data: Multiple approaches to sensitivity analysis of a fish-habitat model. Fisheries.
Waples, R. S., D. W. Jensen, M. M. McClure. In press. Empirical evidence for eco-evolutionary interactions and tradeoffs: Annual variation in productivity reduces effective population size in Chinook salmon. Ecology.
Top of Page
2009
Beechie, T.J., G.R. Pess, M.M. Pollock, M.H. Ruckelshaus, P. Roni. 2009. Chapter 33: Restoring rivers in the 21st century: science challenges in a management context. Pages 695-716. Editors R.J. Beamish and B.J. Rothschild. In The Future of Fisheries Science in North America, Springer, Heidelberg.
Coe, H., P. Kiffney, G. R. Pess, K. Kloehn, M. McHenry. 2009. Periphyton and Invertebrate Response to Wood Placement in Large Pacific Coastal Rivers. River research and applications, 25:1025-1035.
Hall, J. E., J. Chamberlin, A. N. Kagley, C. M. Greene, K. L. Fresh. 2009. Effects of gastric and surgical insertions of dummy ultrasonic transmitters on juvenile Chinook salmon in seawater. Transactions of the American Fisheries Society, 138:52-57.
Hershberger, P. K., N. Elder, C. A. Grady, J. L. Gregg, C. A. Pacheco, C. Greene, C. Rice, T. R. Meyers. 2009. Prevalence of Viral Erthrocytic Necrosis in Pacific Herring and Epizootics in Skagit Bay, Puget Sound, Washington. Journal of Aquatic Animal Health, 21:1-7.
Jensen, D. W., E. A. Steel, A. H. Fullerton, G. R. Pess. 2009. Impact of fine sediment on egg-to-fry survival of Pacific salmon: a meta-analysis of published studies. Reviews in Fisheries Science, 17:348-359.
Steel, E. A., A. H. Fullerton, Y. Caras, M. B. Sheer, P. Olson, D. Jensen, J. Burke, M. T. Maher, P. McElhany. 2009.  A spatially explicit decision support system for managing wide-ranging species. Ecology and Society, 13(2):50.
Steel, E. A., T. J. Beechie, M. H. Ruckelshaus, A. H. Fullerton, P. McElhany, P. Roni. 2009. Mind the gap: Uncertainty and model communication between managers and scientists. American Fisheries Society Symposium. 71 357-372 pp.
Waples, R. S., T. Beechie, and G. R. Pess. 2009. Evolutionary history, habitat disturbance regimes, and anthropogenic changes: What do these mean for resilience of Pacific salmon populations? Ecology and Society 14(1): 3 [online] URL: http://www.ecologyandsociety.org/vol14/iss1/art3/
Top of Page
2008
Acker, S., T. Beechie, P. Shafroth. 2008. Effects of a natural dam-break flood on geomorphology and vegetation on the Elwha River, Washington, U.S.A. Special Issue on Dam Removal and Ecosystem Restoration in the Elwha River Watershed, Washington State, Northwest Science, 82:210-223
Anderson, J. H., P. M. Kiffney, G. R. Pess, T. P. Quinn. 2008. Distribution and growth of juvenile coho salmon (Oncorhynchus kisutch) during colonization of newly accessible habitat. Transactions of the American Fisheries Society, 137:772-781.
Beechie, T.J., M.M. Pollock, S. Baker. 2008. Channel incision, evolution and potential recovery in the Walla Walla and Tucannon River basins, northwestern USA. Earth Surface Processes and Landforms 33: 784-800.
Beechie, T.J., H. Moir, and G. Pess. 2008. Hierarchical physical controls on salmonid spawning location and timing. Pages 83-102 in D. Sear and P. DeVries, eds. Salmonid Spawning Habitat in Rivers: Physical Controls, Biological Responses, and Approaches to Remediation. American Fisheries Society, Symposium 65, Bethesda, Maryland.
Beechie, T., G. Pess, P. Roni, and G. Giannico. 2008. Setting river restoration priorities: a review of approaches and a general protocol for identifying and prioritizing actions. N. Am. J. Fish. Mgmt. 28:891-905.
Brenkman, S. J., G. R. Pess, C. E. Torgersen, K. K. Kloehn, J. J. Duda, and S. C. Corbett. 2008. Predicting recolonization patterns and interactions between potamodromous and anadromous salmonids in response to dam removal in the Elwha River, Washington State, USA. Northwest Science 82 (Special Issue):91-106.
Fullerton, A. H., D. Jensen, E. A. Steel, D. Miller, P. McElhany. 2008. How Certain Are Salmon Recovery Forecasts? A Watershed-Scale Sensitivity Analysis. Environmental Modeling and Assessment.
Greene, C. M., K. Guilbault. 2008. Density-dependent constraints on spawning and incubation. Pages 59-81 in Salmonid Spawning Habitat in Rivers. American Fisheries Society, Bethesda MD.
Kiffney, P. M., G. R. Pess, J. H. Anderson, K. Burton, P. Faulds, S. Riley. 2008. Changes in fish communities following recolonization of the Cedar River, WA, USA by Pacific salmon after 103 years of local extirpation. River research and applications.
Kiffney, P. M. 2008. The structure of simple food chains in headwater streams of southwestern British Columbia in response to gradients of resource supply and predation pressure. Oikos.
Kloehn, K.K., T.J. Beechie, S.A. Morley, H.J. Coe, and J.J. Duda. 2008. Influence of dams on river-floodplain dynamics in the Elwha River, Washington. Northwest Science 82 (Special Issue):224-235.
Liermann, M., P. Roni. 2008. More sites or more years? - optimal study design for monitoring fish response to watershed restoration. North American Journal of Fisheries Management.
McClure, M. M., S. M. Carlson, T. J. Beechie, G. R. Pess, J. C. Jorgensen, S. M. Sogard, S. E. Sultan, D. M. Holzer, J. Travis, B. L. Sanderson, M. E. Power, R. W. Carmichael. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications.
McHenry, M. L., and G. R. Pess. 2008. An overview of monitoring options for assessing the response of salmonids and their aquatic ecosystems in the Elwha River following dam removal. Northwest Science 82 (Special Issue):29-47.
Morley, S.A., J.J. Duda, H.J. Coe, K.K. Kloehn, and M.L. McHenry. 2008. Benthic Invertebrates and Periphyton in the Elwha River Basin: Current Conditions and Predicted Response to Dam Removal. Northwest Science 82 (Special Issue):179-196.
Olson, O. P., L. L. Johnson, G. M. Ylitalo, C. A. Rice, J. R. Cordell, T. K. Collier, J. Steger. 2008. Fish habitat use and chemical contaminant exposure at restoration sites in Commencement Bay, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-88, 117 p.
Pess, G. R., M. L. McHenry, T. J. Beechie, and J. Davies. 2008. Biological impacts of the Elwha River dams and potential salmonid responses to dam removal. Northwest Science 82 (Special Issue):72-90.
Poole, G.C., S.J. ODaniel, K.L. Jones, W.W. Woessner, E.S. Bernhardt, A.M. Helton, J.A. Stanford, B.R. Boer, and T.J. Beechie. 2008. Hydrologic spiraling: the role of multiple interactive flow paths in stream ecosystems. River Research and Applications 24: 1018-1031.
Reichert, W. L., C. M. Greene, R. E. Bilby. 2008. Seasonal variations in stable isotope ratios of juvenile coho salmon (Oncorhynchus kisutch) from western Washington rivers. Canadian Journal of Fisheries and Aquatic Sciences, 65(4):681-690.
Rice, S., P. Kiffney, C. M. Greene, G. R. Pess. 2008. The ecological importance of tributaries and confluences. River Confluences, Tributaries and the Fluvial Network. Wiley Publishing, London
Roni, P., M. McHenry, G. R. Pess, T. J. Beechie. 2008. Evaluating changes in salmon spawning habitat and spawners in the Elwha River following dam removal.
Waples, R. S., G. R. Pess, and T. Beechie. 2008. Evolutionary history of Pacific salmon in dynamic environments. Evolutionary Applications 1:189-206.
Ward, L., P. Crain, B. Freymond, M. McHenry, D. Morrill, G. R. Pess, R. Peters, J. A. Shaffer, B. Winter, B. Wunderlich. 2008. Elwha River Fish Restoration Plan, developed pursuant to the Elwha River Ecosystem and Fisheries Restoration Act, Public Law 102-495. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-90, 168 p.
Zuellig, R. E., D. R. Kashian, M. L. Brooks, P. M. Kiffney, W. H. Clements. 2008. The influence of metal exposure history and ultraviolet-B radiation on benthic commuities in Colorado Rocky Mountain streams. Journal of the North American Benthological Society, 27:120-134.
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2007
Beamer, E. M., C. A. Rice, R. Henderson, K. L. Fresh, M. Rowse. 2007. Taxonomic Composition of Fish assemblages, and Density and Size of Juvenile Chinook Salmon in the Greater Skagit River Estuary: Field Sampling and Data Summary Report. Report to the Seattle District of the U.S. Army Corps of Engineers.
Davies, Jeremy R., Kerry M. Lagueux, Beth Sanderson, and Timothy J. Beechie, 2007. Modeling Stream Channel Characteristics From Drainage-Enforced DEMs in Puget Sound, Washington, USA. Journal of the American Water Resources Association (JAWRA) 43(2):414-426.
Good, T. P., T. J. Beechie, P. McElhany, M. M. McClure, M. H. Ruckelshaus. 2007. Recovery planning for Endangered Species Act-listed Pacific salmon: Using science to inform goals and strategies. Fisheries, 32:426-440.
Hall, J.E., D.M. Holzer, and T.J. Beechie. 2007. Predicting river floodplain and lateral channel migration for salmon habitat conservation. Journal of the American Water Resources Association. 43(3):786-797.
Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2007. Status review of Puget Sound steelhead (Oncorhynchus mykiss). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-81, 117 p.
Kiffney, P. M., P. Roni. 2007. Relationship between productivity, physical habitat, and aquatic invertebrate and vertebrate populations of forest streams: An information-theoretic approach. Transactions of the American Fisheries Society, 136:1088-1103.
McMillan, J. R., S. L. Katz, G. R. Pess. 2007. Observational Evidence of Spatial and Temporal Structure in a Sympatric Anadromous (Winter Steelhead) and Resident Rainbow Trout Mating System on the Olympic Peninsula, Washington. Transactions of the American Fisheries Society, 136(3):736-748.
Rice, C. A. 2007. Evaluating the Biological Condition of Puget Sound. Aquatic and Fishery Sciences. Ph. D. Dissertation University of Washington, Seattle
Top of Page
2006
Bartz, K. K., K. M. Lagueux, M. D. Scheuerell, T. J. Beechie, A. D. Haas, M. H. Ruckelshaus. 2006. Translating restoration scenarios into habitat conditions: an initial step in evaluating recovery strategies for Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 63:1578-1595.
Beechie, T. J., M. Liermann, M. M. Pollock, S. Baker, J. R. Davies. 2006. Channel pattern and river-floodplain dynamics in forested mountain river systems. Geomorphology, 78(1-2):124-141.
Beechie, T.J., M. Ruckelshaus, E. Buhle, A. Fullerton, L. Holsinger. 2006. Hydrologic regime and the conservation of salmon life history diversity. Biological Conservation 130(4):560-572.
Beechie, T. J., C. M. Greene, L. Holsinger, E. M. Beamer. 2006. Incorporating parameter uncertainties into evaluation of spawning habitat limitations on salmon populations. Canadian Journal of Fisheries and Aquatic Sciences, 63(6):1242-1250.
Coe, H., P. M. Kiffney, G. R. Pess. 2006. A comparison of methods to evaluate the response of periphyton and invertebrates to wood placement in large Pacific coastal rivers. Northwest Science, 80(4):298-307.
Fullerton, A.H., T.J. Beechie, S.E. Baker, J.E. Hall, and K.A. Barnas. 2006.0Regional Patterns of Riparian Characteristics in the Interior Columbia River Basin, Northwestern USA: Applications for Restoration Planning. Landscape Ecology 21:1347-1360.
Kiffney, P. M., C. M. Greene, J. R. Davies, J. E. Hall. 2006. Tributary streams create spatial discontinuities in habitat, biological productivity, and diversity in mainstem rivers. Canadian Journal of Fisheries and Aquatic Sciences.
Rhodes, L.D., C. Durkin, S.L. Nance, and C.A. Rice. 2006. Prevalence and analysis of Renibacterium salmoninarum infection among juvenile Chinook salmon Oncorhynchus tshawytscha in North Puget Sound. Dis. Aquat. Organ. 71(3):179-190.
Roni, P., S. A. Morley, P. S. Garcia, C. Detrick, I. D. King, E. M. Beamer. 2006. Coho salmon smolt production from constructed and natural floodplain habitats. Transactions of the American Fisheries Society, 135:1398.
Roni, P., T. R. Bennett, S. A. Morley, G. R. Pess, K. Hanson, D. Van Slyke, P. Olmstead. 2006. Rehabilitation of bedrock stream channels: the effects of boulder weir replacement on aquatic habitat and biota. River research and applications, 22: 967-980.
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2005
Beamer, E. M., A. McBride, C. Greene, R. Henderson, G. Hood, K. Wolf, K. Larsen, C. Rice, K. Fresh. 2005. Delta and nearshore restoration for the recovery of wild Skagit River chinook salmon: Linking estuary restoration to wild chinook salmon populations. Appendix D of Skagit Chinook Recovery. Report to Skagit River System Cooperative La Conner, WA.
Beechie, T. J., M. Liermann, E. M. Beamer, R. Henderson. 2005. A classification of habitat types in a large river and their use by juvenile salmonids. Transactions of the American Fisheries Society, 134:717-729.
Beechie, T. J., C. N. Veldhuisen, E. M. Beamer, D. E. Schuett-Hames, R. H. Conrad, P. DeVries. 2005. Monitoring Treatments to Reduce Sediment and Hydrologic Effects from Roads. Pages 35-65 in Roni, P. (Ed.) Monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Bilby, R. E., W. Ehinger, T. P. Quinn, G. Volkhardt, K. Krueger, D. E. Seiler, G. R. Pess, C. E. Jordan, D. Poon. 2005. Study evaluates fish response to management actions. Western Forester, 50(2):14-15.
Greene, C.M., D.W. Jensen, E. Beamer, G.R. Pess, and A.E. Steel. 2005. Effects of environmental conditions during stream, estuary, and ocean residency on Chinook salmon return rates in the Skagit River, WA. Transactions of the American Fisheries Society. 134:1562-1581.
Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2005. Status review update for Puget Sound steelhead. Report submitted to NOAA/NMFS Northwest Regional Office, Seattle, Washington, 26 July 2005, 70 p. + 4 appendices.
Karlsson, O. M., J. S. Richardson, P. M. Kiffney. 2005. Modelling organic matter dynamics in headwater streams of south-western British Columbia, Canada. Ecological Modelling, 183:463-476.
Kiffney, P. M., R. E. Bilby, B. L. Sanderson. 2005. Monitoring the Effects of Nutrient Enrichment on Freshwater Ecosystems. Pages 237-265 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Lucchetti, G., K. O. Richter, R. E. Schaefer. 2005. Monitoring of acquisitions and conservation easements. Pages 277-311 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Medina, A. L., J. N. Rinne, P. Roni. 2005. Riparian Restoration through Grazing Management: Considerations for Monitoring Project Effectiveness. Pages 97-126 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Morley, S. A., P. S. Garcia, T. R. Bennett, P. Roni. 2005. Juvenile salmonid (Oncorhynchus spp.) use of constructed and natural side channels in Pacific Northwest Rivers. Canadian Journal of Fisheries and Aquatic Sciences, 62:2811-2821.
Pess, G. R., S. A. Morley, P. Roni. 2005. Evaluating fish response to culvert replacement and other methods for reconnecting isolated aquatic habitats. Pages 267-276 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Pess, G. R., S. A. Morley, J. L. Hall, R. K. Timm. 2005. Monitoring floodplain restoration. Pages 127-166 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Plummer, M. 2005. The Economic Evaluation of Stream and Watershed Restoration Projects. Pages 313-330 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Pollock, M. M., T. J. Beechie, S. S. Chan, R. Bigley. 2005. Monitoring Restoration of Riparian Forests. Pages 67-96 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Pollock, M. M., T. J. Beechie, S. Chan, R. Bigley. 2005. Monitoring and evaluating riparian restoration efforts. In Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Rice, C. A. 2005. Effects of shoreline modification on a northern Puget Sound beach: microclimate and embryo mortality in summer spawning surf smelt (Hypomesus pretiosus). Estuaries and Coasts, 29(1):63-71.
Rice, C. A., W. G. Hood, L. M. Tear, C. A. Simenstad, G. D. Williams, L. L. Johnson, B. E. Feist, P. Roni. 2005. Monitoring Rehabilitation in Temperate North American Estuaries. Pages 167-207 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Roni, P., K. Hanson, T. J. Beechie, G. R. Pess, M. M. Pollock, D. M. Bartley. 2005. Habitat rehabilitation for inland fisheries. Global review of effectiveness and guidance for rehabilitation of freshwater ecosystems. FAO Fisheries Technical Paper. No. 484, Food and Agriculture Organization of the United Nations, 116 p.
Roni, P., A. Fayram, M. Miller. 2005. Monitoring and Evaluating Instream Habitat Enhancement. Pages 209-236 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Roni, P. (Editor) 2005. Monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland, x, 350 p.
Roni, P. 2005. Overview and background. Pages 1-11 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
Roni, P., M. Liermann, C. E. Jordan, E. A. Steel. 2005. Steps for Designing a Monitoring and Evaluation Program for Aquatic Restoration. Pages 13-34 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.
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2004
Benda, L., L. Poff, D. Miller, T. Dunne, G. Reeves, G. R. Pess, M. M. Pollock. 2004. Network disturbance theory: landscape and river organization of environmental variance. Bioscience, 54:413-427.
Benda, L., N. L. Poff, D. Miller, T. Dunne, G. Reeves, G. R. Pess, M. M. Pollock. 2004. The network dynamics hypothesis: How channel networks structure riverine habitats. Bioscience, 54:413-427.
Booth, D. B., J. R. Karr, S. Schauman, C. P. Konrad, S. A. Morley, M. G. Larson, S. J. Burges. 2004. Reviving urban streams: land use, hydrology, biology, and human behavior. Journal of the American Water Resources Association, 40:1351-1364.
Greene, C. M., T. J. Beechie. 2004. Consequences of potential density-dependent mechanisms on recovery of ocean-type chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 61:590-602.
Hyatt, T. L., T. Z. Waldo, T. J. Beechie. 2004. A watershed scale assessment of riparian forests, with implications for restoration. Restoration Ecology, 12:175-183.
Kiffney, P. M., C. J. Volk, T. J. Beechie, G. L. Murray, G. R. Pess, R. E. Edmonds. 2004. A high-severity disturbance event alters community and ecosystem properties in West Twin Creek, Olympic National Park, Washington, USA. American Midland Naturalist, 152:268-303.
Kiffney, P. M., J. S. Richardson, J. P. Bull. 2004. Establishing light as a causal mechanism structuring stream communities in response to experimental manipulation of riparian buffer width. Journal of the North American Benthological Society, 23:542-555.
Liermann, M., A. Steel, M. Rosing, P. Guttorp. 2004. Random denominators and the analysis of ratio data. Environmental and Ecological Statistics, 11:55-71.
Pess, G. R., T. J. Beechie, S. A. Morley, E. M. Beamer. 2004. Analyses for Phase II Recovery Planning: Identifying ecosystem restoration actions. Pages 40-59 in Beechie, T. J., P. Roni, E. A. Steel. (Eds.) Ecosystem recovery planning for listed salmon: An integrated assessment approach for salmon habitat. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-58, 183 p.
Pollock, M. M., G. R. Pess, T. J. Beechie, D. R. Montgomery. 2004. The importance of beaver ponds to coho salmon production in the Stillaguamish River basin, Washington, USA. North American Journal of Fisheries Management, 24:749-760.
Rice, C. A. 2004. 2003 Bellingham Bay juvenile Chinook townetting project field sampling and data summary. Report to Port of Bellingham
Roni, P., T. J. Beechie, G. R. Pess. 2004. Prioritizing restoration actions within watersheds. Pages 60-73 in Beechie, T. J., E. A. Steel, P. Roni. (Eds.) Ecosystem Recovery Planning for Listed Salmon: An Integrated Assessment Approach for Salmon Habitat. NOAA Technical Memorandum NMFS-NWFSC-58, Seattle, Washington.
Steel, E. A., B. E. Feist, D. Jenson, G. R. Pess, M. B. Sheer, J. Brauner, R. E. Bilby. 2004. Landscape models to understand steelhead (Oncorhynchus mykiss) distribution and help prioritize barrier removals in the Willamette Basin, OR, U.S.A. Canadian Journal of Fisheries and Aquatic Sciences, 61:999-1011.
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2003
Beamer, E. M., T. J. Beechie, B. S. Perkowski, J. R. Klochak. 2003. Restoration of habitat forming processes: an applied restoration strategy for the Skagit River. Pages 157-183 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) (editors) Ecosystem recovery planning for listed salmon: an integrated assessment approach. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.
Beechie, T. J. 2003. An assessment approach for habitat recovery planning. Pages 5-17 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: an integrated assessment approach for salmon habitat. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.
Beechie, T. J., P. Roni, E. A. Steel, E. Quimby. (Eds.) 2003. Ecosystem recovery planning for listed salmon: An integrated assessment approach for salmon habitat. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-58, 183 p.
Edmonds, R.L., P.M. Kiffney, C.J. Volk, S.A. McAfee. Ecosystem and Watershed Studies in Olympic National Park: 2002 Annual Report. Technical Report PS/CCSOUW/NTRT-2002/03. Submitted to National Park Service 909 1st Ave. Seattle, WA 98104-1060.
Feist, B. E., E. A. Steel, G. R. Pess, R. E. Bilby. 2003. The influence of scale on salmon habitat restoration priorities. Animal Conservation, 6:271-282.
Greene, C. M. 2003. Habitat selection reduces extinction of populations subject to Allee effects. Theoretical Population Biology, 64:1-10.
Kiffney, P. M., J. S. Richardson, J. P. Bull. 2003. Responses of periphyton and insect consumers to experimental manipulation of riparian buffer width along headwater streams. Journal of the American Water Resources Association, 40:1060-1076.
Pess, G. R., T. J. Beechie, J. E. Williams, D. R. Whitall, J. I. Lange, J. R. Klochak. 2003. Chapter 8 - Watershed assessment techniques and the success of aquatic restoration activities. Pages 185-201 in Wissmar, R. C., P. A. Bisson. (Eds.) Strategies for Restoring River Ecosystems: Sources of Variability and Uncertainty in Natural and Managed Systems. American Fisheries Society, Bethesda, Maryland.
Roni, P., M. Liermann, A. Steel. 2003. Methods for monitoring salmonid and responses of other fishes to in-stream restoration. In Montgomery, D. R., D. Bolton, D. B. Booth. (Eds.) Restoration of Puget Sound Rivers.
Roni, P. 2003. Responses of benthic fishes and giant salamanders to placement of large woody debris in small Pacific Northwest streams. North American Journal of Fisheries Management, 23:1087-1097.
Sanderson, B. L., E. A. Steel, T. J. Beechie, G. R. Pess, M. B. Sheer, C. A. Campbell. 2003. Analyses for Phase I recovery planning: setting recovery goals. Pages 18-39 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: an integrated assessment approach for salmon habitat. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.
Steel, E. A., M. Liermann, P. McElhany, N. L. Scholz, A. Cullen. 2003. Managing uncertainty in habitat recovery planning. In Beechie, T. J., P. Roni, E. A. Steel, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: An integrated assessment approach for salmon habitat. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-58, 183 p.
Steel, E. A., L. Johnston, B. E. Feist, G. R. Pess, R. E. Bilby, D. Jensen, T. J. Beechie, J. M. Myers. 2003. Pacific salmon recovery planning and the Salmonid Watershed Analysis Model (SWAM): a broad-scale tool for assisting in the development of habitat recovery plans. Endangered Species Update, 20(1):3-15.
Volk, C. J., P. M. Kiffney, R. L. Edmonds. 2003. Role of Riparian Red Alder in the Nutrient Dynamics of Coastal Streams of the Olympic Peninsula, Washington, USA. In Stockner, J. (Ed.) Nutrients in Salmonid Ecosystems: Sustaining Production and Biodiversity. American Fisheries Society Symposium, Bethesda, MD.
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2002
Abbe, T. B., G. R. Pess, D. R. Montgomery, K. Fetherston. 2002. Integrating Engineered Log Jam Technology into Reach-Scale River Restoration. Pages 443-482 in Montgomery, D. R., S. Bolton, D. B. Booth. (Eds.) Restoration of Puget Sound Rivers. University of Washington Press, Seattle, WA.
Beechie, T. J., G. R. Pess, E. M. Beamer, G. Lucchetti, R. E. Bilby. 2002. Role of watershed assessments in recovery planning for salmon. Pages 194-225 in Montgomery, D. R., S. Bolton, D. B. Booth. (Eds.) Restoration of Puget Sound Rivers. University of Washington Press, Seattle, WA.
Kiffney, P. M., J. P. Bull, M. C. Feller. 2002. Climatic and hydrologic variability in a coastal watershed of southwestern British Columbia. Journal of the American Water Resources Association, 38:1437-1451.
Kiffney, P. M., C. J. Volk, C. Eberhart, J. E. Hall. 2002. Community and ecosystem attributes of the Cedar River watershed above Landsburg Diversion before arrival of Pacific salmon. Report to Seattle Public Utilities Technical draft report.
Kiffney, P. M., W. H. Clements. 2002. Ecological effects of metals on benthic invertebrate communities. In Simon, T., P. Stewart. (Eds.) Biological Response Signatures: A multimetric index patterns for assessment of freshwater aquatic assemblages. CRC Press.
McClure, M. M., G. R. Pess. 2002. Revision of water conservation. In McGraw-Hill Encyclopedia of Science and Technology, 9th Ed.
Morley, S. A., J. R. Karr. 2002. Assessing and restoring the health of urban streams in the Puget Sound Basin. Conservation Biology, 16:1498-1509.
Pess, G. R., D. R. Montgomery, T. J. Beechie, L. Holsinger. 2002. Anthropogenic alterations to the biogeography of salmon in Puget Sound. Pages 129-154 in Montgomery, D. R., S. Bolton, D. B. Booth. (Eds.) Restoration of Puget Sound Rivers. University of Washington Press, Seattle, WA.
Pess, G. R., D. R. Montgomery, E. A. Steel, R. E. Bilby, B. E. Feist, H. M. Greenberg. 2002. Landscape characteristics, land use, and coho salmon (Oncorhynchus kisutch) abundance, Snohomish River, Wash., USA. Canadian Journal of Fisheries and Aquatic Sciences, 59:613-623.
Pess, G. R., D. R. Montgomery, R. E. Bilby, E. A. Steel, B. E. Feist, H. M. Greenberg. 2002. Landscape characteristics, land use, and coho salmon (Oncorhynchus kisutch) abundance, Snohomish River, Washington, USA. Canadian Journal of Fisheries and Aquatic Sciences, 59:613-623.
Rice, C. A., D. P. Lomax, C. A. Laetz, W. Osenga, T. K. Collier. 2002. Commencement Bay restoration fish monitoring - 2002 field sampling and data summary. Report to NOAA Restoration Center
Roni, P., T. J. Beechie, R. E. Bilby, F. E. Leonetti, M. M. Pollock, G. R. Pess. 2002. A review of stream restoration techniques and a hierarchical strategy for prioritizing restoration in Pacific Northwest watersheds. North American Journal of Fisheries Management, 22(1):1-20.
Roni, P. 2002. Habitat Use by Fishes and Pacific Giant Salamanders in Small Western Oregon and Washington Streams. Transactions of the American Fisheries Society, 131:743-761.
Roni, P., M. Liermann, A. Steel. 2002. Monitoring and evaluating responses of salmonids and other fishes to in-stream restoration. In Montgomery, D. R., S. Bolton, D. B. Booth. (Eds.) Restoration of Puget Sound Rivers. University of Washington Press.
Welty, J. J., T. J. Beechie, K. Sullivan, D. M. Hyink, R. E. Bilby, C. Andrus, G. R. Pess. 2002. Riparian Aquatic Interaction Simulator (RAIS): a model of riparian forest dynamics for the generation of large woody debris and shade. Forest Ecology and Management, 162:299-318.
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2001
Beechie, T. J. 2001. Empirical predictors of annual bed load travel distance, and implications for salmonid habitat restoration and protection. Earth Surface Processes and Landforms, 26:1025-1034.
Beechie, T. J., B. D. Collins, G. R. Pess. 2001. Holocene and recent geomorphic processes, land use and salmonid habitat in two north Puget Sound river basins. Pages 37-54 in Dorava, J. B., D. R. Montgomery, F. Fitzpatrick, B. Palcsak. (Eds.) Geomorphic processes and riverine habitat, Water Science and Application. American Geophysical Union, Washington D.C.
Kahler, T. H., P. Roni, T. P. Quinn. 2001. Summer movement and growth of juvenile anadromous salmonids in small western Washington streams. Canadian Journal of Fisheries and Aquatic Sciences, 58:1947-1956.
Kiffney, P. M., J. S. Richardson. 2001. Interactions among nutrients, periphyton, and invertebrate and vertebrate (Ascaphus truei) grazers in experimental channels. Copeia, 2001:422-429.
Larson, M. L., D. B. Booth, S. A. Morley. 2001. Effectiveness of large woody debris in stream rehabilitation projects in urban basins. Ecological Engineering, (18)211-226.
Meador, J. P., C. A. Rice. 2001. Impaired growth in the polychaete Armandia brevis exposed to tributyltin in sediment. Marine Environmental Research, 51:113-129.
Riley, S., P. M. Kiffney, C. Inman. 2001. Habitat inventory and salmonid stock assessment in the Cedar River and tributaries. Report to Seattle Public Utilities Technical Report.
Roni, P., T. P. Quinn. 2001. Density and size of juvenile salmonids in response to placement of large woody debris in western Oregon and Washington streams. Canadian Journal of Fisheries and Aquatic Sciences, 58:282-292.
Roni, P., T. P. Quinn. 2001. Effects of artificial wood placement on movements of trout and juvenile coho in natural and artificial channels. Transactions of the American Fisheries Society, 130:675-685.
Roni, P., T. P. Quinn. 2001. Effects of wood placement on movements of trout and juvenile coho salmon in natural and artificial stream channels. Transactions of the American Fisheries Society, 130:675-685.
Roni, P. 2001. Responses of fishes and salamanders to instream restoration efforts in western Oregon and Washington. Report to Bureau of Land Management Project completion , Interagency Agreement No. 1422H952-A98-3007, National Marine Fisheries Service, Northwest Fisheries Science Center, Seattle, WA, 132 p.
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2000
Beechie, T. J., G. R. Pess, P. Kennard, R. E. Bilby, S. Bolton. 2000. Modeling recovery rates and pathways for woody debris recruitment in northwestern Washington streams. North American Journal of Fisheries Management, 20:436-452.
Kiffney, P. M., J. P. Bull. 2000. Factors controlling periphyton accrual during summer in headwater streams of southwestern British Columbia, Canada. Journal of Freshwater Ecology, 15:339-351.
Kiffney, P. M., J. S. Richardson, M. C. Feller. 2000. Fluvial and epilithic organic matter dynamics in small streams of southwestern British Columbia, Canada. Archives of Hydrobiology, 149:109-129.
Rice, C. A., M. S. Myers, M. L. Willis, B. L. French, E. Casillas. 2000. From sediment bioassay to fish biomarker - connecting the dots using simple trophic relationships. Marine Environmental Research, 50:527-533.
Richardson, J. S., P. M. Kiffney. 2000. Responses of a macroinvertebrate community from a pristine, southern British Columbia, Canada stream to metals in experimental mesocosms. Environmental Toxicology and Chemistry, 19:736-734.
Richardson, J., P. M. Kiffney. 2000. Response of macroinvertebrate communities from a pristine, southern British Columbia stream to metals in experimental mesocosms. Environmental Toxicology and Chemistry, 19:736-743.
Roni, P., A. Fayram. 2000. Estimating winter salmonid abundance in small western Washington streams: a comparison of three techniques. North American Journal of Fisheries Management, 20:683-692.
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1998
Roni, P., L. A. Weitkamp, J. Scordino. 1998. Identification of essential fish habitat for salmon in the Pacific northwest: Initial efforts, information needs, and future direction. Pages 93-107 in Fish habitat: essential fish habitat and rehabilitation. American Fisheries Society Symposium 22.
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1997
Rice, C. A. 1997. Multiple life stage sensitivity of a deposit-feeding polychaete to chemical toxicants in sediment. M.S. University of Washington, Seattle, xii, 118 p.
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1996
Roni, P., L. A. Weitkamp. 1996. Environmental monitoring of the Manchester Naval Fuel Pier replacement, Puget Sound, Washington, 1991-1994. Report to the U.S. Department of Navy, Naval Facilities Engineering Command, Western Division, Contract N62474-91-MP-00758, 40 p. plus appendices.
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1995
Rice, C. A., P. D. Plesha, E. Casillas, D. Misitano, J. P. Meador. 1995. Growth and survival of three marine invertebrate species in sediments from the Hudson-Raritan estuary, New York. Environmental Toxicology and Chemistry, 14:1931-1940.
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