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In press | 2009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994 | 1993 | 1992 | 1991 1990 | 1989 | 1988 | 1987 Click the links to go to documents. Click the green arrow to see metadata. In press Allendorf, F. W., J. J. Hard. In press. Human-Induced Evolution Caused By Unnatural Selection Through Harvest Of Wild Animals. In In the Light of Evolution III: Two Centuries of Darwin. National Academies Press, Washington, DC. Ashe, E., D. P. Noren, R. Williams. In press. Animal Behaviour And Protected Areas: Habitat Conservation For An Endangered Killer Whale Population. Animal Conservation. Baldwin, D. H., J. A. Spromberg, T. K. Collier, N. L. Scholz. In press. A fish of many scales: extrapolating sublethal pesticide exposures to the productivity of wild salmon populations. Ecological Applications. Beechie, T.J., D.A. Sear, J.D. Olden, G.R. Pess, J.M. Buffington, H. Moir, P. Roni, and M.M. Pollock. In press. Process-based principles for restoring dynamic river systems. BioScience. Chittaro, P. M., I. C. Kaplan, A. A. Keller, P. S. Levin. In press. Trade-offs between species conservation and the size of marine protected areas. Conservation Biology. Daly, E. A., R. D. Brodeur, L. A. Weitkamp. In press. Ontogenetic shifts in diets of juvenile and subadult coho (Oncorhynchus kisutch) and Chinook salmon (O. tshawytchsa) in coastal marine waters: Important for marine survival? Transactions of the American Fisheries Society, 138:1420-1438. Eldridge, W. H., J. J. Hard, K. A. Naish. In press. Fishery-induced evolution in Chinook salmon: the role of harvest gear, location and genetic correlations among life history traits. Ecological Applications. Enders, E. C., M. H. Gessel, J. G. Williams. In press. The behavioural response of downstream migrating fall Chinook salmon smolt to accelerating flows. Canadian Journal of Fisheries and Aquatic Sciences. Hard, J. J. In press. Case study of Pacific salmon. In Dieckmann, U., O. R. Godoe, M. Heino, J. Mork. (Eds.) Fisheries-Induced Adaptive Change. Cambridge University Press, Cambridge, U.K. Hard, J. J., W. H. Eldridge, K. A. Naish, C. Krueger. In press. Genetic consequences of size-selective fishing: implications for viability of Yukon River Chinook salmon. In Krueger, C., C. E. Zimmerman. (Eds.) Sustainability of the Arctic-Yukon-Kuskokwim Salmon Fisheries: What Do We Know About Salmon Ecology, Management, and Fisheries? American Fisheries Society, Anchorage. Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. In press. Coastwide Status Review of Coastal Cutthroat Trout (Oncorhynchus clarki clarki) by the National Marine Fisheries Service for listing under the Endangered Species Act. The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation. 2 Oregon Chapter of AFS, Portland, OR Lee, J. S., B. A. Berejikian. In press. Structural complexity in relation to the habitat preferences, territoriality, and hatchery rearing of juvenile China rockfish (Sebastes nebulosus). Environmental Biology of Fishes, 84:411-419. Lema, S. C., J. T. Dickey, I. R. Schultz, P. Swanson. In press. Thyroid hormone regulation of mRNAs encoding thyrotropin ²-subunit, glycoprotein ±-subunit and thyroid hormone receptors ± and ² in brain, pituitary gland, liver and gonads of an adult teleost, Pimephales promelas. Journal of Endocrinology. Luckenbach, J. A., J. T. Dickey, P. Swanson. In press. Regulation of pituitary GnRH receptor and gonadotropin subunits by IGF1 and GnRH in prepubertal male coho salmon. General and Comparative Endocrinology. Roni, P., K. Hanson, T. J. Beechie. In press. Global review of the physical and biological effectiveness of stream habitat rehabiliataion techniques. North American Journal of Fisheries Management, 28:856-890. Tierney, K. B., D. H. Baldwin, T. J. Hara, P. S. Ross, N. L. Scholz, C. J. Kennedy. In press. Olfactory Toxicity In Fishes. Aquatic Toxicology. Tyson, R., C. E. Jordan, J. Hebert. In press. Modelling anguilliform swimming at intermediate Reynolds number: A review and new approach using the immersed boundary method. Computer Methods in Applied Mechanics and Engineering. Waples, R. S., D. W. Jensen, M. M. McClure. In press. Empirical evidence for eco-evolutionary interactions and tradeoffs: Annual variation in productivity reduces effective population size in Chinook salmon. Ecology. Waples, R. S., M. M. McClure, T. C. Wainwright, P. McElhany, P. W. Lawson. In press. Integrating evolutionary and ecological considerations in recovery planning for Pacific salmon. Cambridge University Press Williams, G. D., K. S. Andrews, D. Farrer, P. S. Levin. In press. Catch Rates And Population Demographics Of Bluntnose Sixgill Sharks. Transactions of the American Fisheries Society. Top of Page 2009 Achord, S., B. P. Sandford, E. E. Hockersmith, M. G. Nesbit, N. D. Dumdei, J. L. Lamb, K. W. McIntyre, N. N. Paasch, J. G. Williams. 2009. Monitoring the migrations of wild Snake River spring/summer Chinook salmon juveniles, 2007-2008. BPA by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the Bonneville Power Administration, Contract 00031849, Project No. 1991-028-00, 96 p. Allendorf, F. W., J. J. Hard. 2009. Human-induced evolution caused by unnatural selection through harvest of wild animals. Proceedings of the National Academy of Sciences, USA, 106(Supplement 1):9987-9994. Andrews, K. S., G. D. Williams, D. Farrer, N. Tolimieri, C. J. Harvey, G. Bargmann, P. S. Levin. 2009. Diel activity patterns of sixgill sharks Hexanchus griseus: the ups-and-downs of an apex predator. Animal Behavior, 78(2009):525-536. Beechie, T.J., G.R. Pess, M.M. Pollock, M.H. Ruckelshaus, P. Roni. 2009. Chapter 33: Restoring rivers in the 21st century: science challenges in a management context. Pages 695-716. Editors R.J. Beamish and B.J. Rothschild. In The Future of Fisheries Science in North America, Springer, Heidelberg. Benkwitt, C. E., R. D. Brodeur, T. P. Hurst, E. A. Daly. 2009. Diel feeding chronology, gastric evacuation and daily food consumption of juvenile Chinook salmon in Oregon coastal waters. Transactions of the American Fisheries Society, 138:111-120. Berejikian, B. A., D. M. Van Doornik, J. A. Scheurer, R. Bush. 2009. Reproductive behavior and relative reproductive success of natural - and - hatchery - origin Hood Canal summer chum slamon (Oncorhynchus keta). Canadian Journal of Fisheries and Aquatic Sciences, 66:781789. Chittaro, P. M., R. J. Finley, P. S. Levin. 2009. Spatial and temporal patterns in the contribution of fish from their juvenile habitats. Oecologia, 160:49-61. Colman, J. R., D. H. Baldwin, L. L. Johnson, N. L. Scholz. 2009. Effects of the synthetic estrogen, 17±-ethinylestradiol, on aggression and courtship behavior in male zebrafish (Danio rerio). Aquatic Toxicology, 91(4):346-354. Halvorsen, M., L. E. Wysocki, C. M. Stehr, D. H. Baldwin, D. R. Chicoine, N. L. Scholz, A. N. Popper. 2009. Barging Effects on Sensory Systems of Chinook Salmon Smolts. Transactions of the American Fisheries Society, 138:777-789. Hamel, O. S., I. J. Stewart. 2009. Stock Assessment of Pacific Hake, Merluccius productus, (a.k.a. Whiting). In U.S. and Canadian Waters in 2009. Pacific Fishery Managment Council, Portland, OR, 246 p. Honea, J., J. Jorgensen, M. McClure, T. Cooney, K. Engie, & R. Hilborn. 2009. Evaluating habitat effects on population status: Influence of habitat restoration on spring-run Chinook salmon. Freshwater Biology 54:1576-1592. Incardona, J., M. G. Carls, H. L. Day, C. A. Sloan, J. L. Bolton, T. K. Collier, N. L. Scholz. 2009. Cardiac arrhythmia is the primary response of embryonic Pacific herring (Clupea pallasi) exposed to crude oil during weathering. Environmental Science & Technology, 43(1):201-207. Jorgensen, J., J. Honea, M. McClure, T. Cooney, D. Holzer, & K. Engie. 2009. Linking landscape-level change to habitat quality: an evaluation of restoration actions on freshwater habitat of spring-run Chinook salmon. Freshwater Biology 54:1560-1575. Kaplan, I. C., P. S. Levin. 2009. Ecosystem-based management of what? An emerging approach for balancing conflicting objectives in marine resource management. Springer, 736 p. Kemp, P. S., J. G. Williams. 2009. Illumination Influences The Ability Of Migrating Juvenile Salmonids To Pass A Submerged Experimental Weir. Kendall, N.W., J. J. Hard, and T. P. Quinn. 2009. Quantifying six decades of fishery selection for size and age at maturity in sockeye salmon. Evolutionary Applications 2:523-536. Laetz, C. A., D. H. Baldwin, T. K. Collier, V. Hebert, J. D. Stark, N. L. Scholz. 2009. The synergistic toxicity of pesticide mixtures: implications for ecological risk assessment and the conservation of threatened Pacific salmon. Environmental Health Perspectives, 117(3):348-353. Linbo, T. L., D. H. Baldwin, J. K. McIntyre, N. L. Scholz. 2009. Effects of water hardness, alkalinity, and dissolved organic carbon on the toxicity of copper to the lateral line of developing fish. Environmental Toxicology and Chemistry. Noren, D. P., L. Rea, T. R. Loughlin. 2009. A model to predict fasting capacities and utilization of body energy stores in weaned Steller sea lions (Eumetopias jubatus) during periods of reduced prey availability. Canadian Journal of Zoology, 87:852-864. Noren, D. P., A. H. Johnson, D. Rehder, A. Larson. 2009. Close approaches by vessels elicit surface active behaviors by Southern Resident killer whales. Endangered Species Research, 8(3):179-192. Phillips, A. J., R. D. Brodeur, A. V. Suntsov. 2009. Micronekton community structure in the epipelagic zone of the northern California Current upwelling system. Progress in Oceanography, 80:74-92. Ruckelshaus, M. H., T. E. Essington, P. S. Levin. 2009. Marine Ecosystem Based Management in Practice. Puget Sound, WA, USA. Page 392 in McLeod, K. L., H. Leslie. (Eds.) Ecosystem-Based Management for the Oceans. Island Press, San Francisco, CA. Steel, E. A., T. J. Beechie, M. H. Ruckelshaus, A. H. Fullerton, P. McElhany, P. Roni. 2009. Mind the gap: Uncertainty and model communication between managers and scientists. American Fisheries Society Symposium. 71 357-372 pp. Stehr, C. M., T. L. Linbo, D. H. Baldwin, N. L. Scholz, J. Incardona. 2009. Evaluating the effects of forestry herbicides on fish development using rapid phenotypic screens. North American Journal of Fisheries Management, 29:975-984. Tolimieri, N., K. S. Andrews, G. D. Williams, S. L. Katz, P. S. Levin. 2009. Home range size and patterns of space use for lingcod, copper rockfish and quillback rockfish in Puget Sound in relation to diel and tidal cycles. Marine Ecology Progress Series, 380:229-243. Waples, R. S., T. Beechie, and G. R. Pess. 2009. Evolutionary history, habitat disturbance regimes, and anthropogenic changes: What do these mean for resilience of Pacific salmon populations? Ecology and Society 14(1): 3 [online] URL: http://www.ecologyandsociety.org/vol14/iss1/art3/ Williams, R., D. P. Noren. 2009. Swimming speed, respiration rate and estimated cost of transport in adult killer whales. Marine Mammal Science. Top of Page 2008 Acker, S., T. Beechie, P. Shafroth. 2008. Effects of a natural dam-break flood on geomorphology and vegetation on the Elwha River, Washington, U.S.A. Special Issue on Dam Removal and Ecosystem Restoration in the Elwha River Watershed, Washington State, Northwest Science, 82:210-223 Araki, H., B. A. Berejikian, M. J. Ford, M. Blouin. 2008. Fitness of hatchery-reared salmonids in the wild. Evolutionary Applications, 1:342-355. Beechie, T.J., M.M. Pollock, S. Baker. 2008. Channel incision, evolution and potential recovery in the Walla Walla and Tucannon River basins, northwestern USA. Earth Surface Processes and Landforms 33: 784-800. Beechie, T.J., H. Moir, and G. Pess. 2008. Hierarchical physical controls on salmonid spawning location and timing. Pages 83-102 in D. Sear and P. DeVries, eds. Salmonid Spawning Habitat in Rivers: Physical Controls, Biological Responses, and Approaches to Remediation. American Fisheries Society, Symposium 65, Bethesda, Maryland. Beechie, T., G. Pess, P. Roni, and G. Giannico. 2008. Setting river restoration priorities: a review of approaches and a general protocol for identifying and prioritizing actions. N. Am. J. Fish. Mgmt. 28:891-905. Berejikian, B. A., T. Johnson, R. Endicott, J. Lee. 2008. Increases in Steelhead Redd Abundance Resulting from Two Conservation Hatchery Strategies in the Hamma Hamma River, WA. Canadian Journal of Fisheries and Aquatic Sciences, 65:754-764. Brodeur, R. D., W. T. Peterson, T. D. Auth, H. L. Soulen, M. M. Parnel, A. A. Emerson. 2008. Abundance and diversity of coastal fish larvae as indicators of recent changes in ocean and climate conditions in the Oregon upwelling zone. Marine Ecology Progress Series, 366:187-202. Brodeur, R. D., C. L. Suchman, D. C. Reese, T. W. Miller, E. A. Daly. 2008. Spatial overlap and trophic interaction between pelagic fish and large jellyfish in the northern California Current. Marine Biology, 154:649-659. Bromaghin, J. F., R. M. Nielson, and J. J. Hard. 2008. An investigation of the potential effects of selective exploitation on the demography and productivity of Yukon River Chinook Salmon. US Fish and Wildlife Service, Alaska Fisheries Technical Report No. 100, 69 p. Carls, M. G., L. Holland, M. Larsen, T. K. Collier, N. L. Scholz, J. Incardona. 2008. Fish embryos are damaged by dissolved PAHs, not oil particles. Aquatic Toxicology, 88:121-127. Courbois, J., S. L. Katz, D. J. Isaak, A. Steel, R. F. Thurow, M. Rub, T. Olsen, C. E. Jordan. 2008. Evaluating probability sampling strategies for estimating redd counts: an example with Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences. Ford MJ, Hard JJ, Boelts B, LaHood E, Miller J. 2008. Estimates of natural selection in a salmon population in captive and natural environments. Conservation Biology 22:783-794 Galbreath, P. F., C. A. Beasley, B. A. Berejikian, R. W. Carmichael, D. E. Fast, M. J. Ford, J. A. Hesse, L. L. McDonald, A. R. Murdoch, C. M. Peven, D. A. Venditti. 2008. Recommendations for Broad Scale Monitoring to Evaluate the Effects of Hatchery Supplementation on the Fitness of Natural Salmon and Steelhead Populations. Final Draft Report of the Ad Hoc Supplementation Monitoring and Evaluation Workgroup. Fish Science Department, Columbia River Inter-Tribal Fish Commission; Quantitative Consultants, Inc.; Northwest Fisheries Science Center, NOAA Fisheries; Oregon Department of Fish and Wildlife; Yakima Klickitat Fisheries Project, Yakima Nation; Department of Fisheries, Nex Perce Tribe; Western Ecosystems Technology, Inc.; Washington Department of Fish and Wildlife; Fisheries Program, Chalan Public Utility District; Idaho Department of Fish and Game. Grober-Dunsmore, R., L. Wooninck, C. Wahle, C. Ainsworth, S. Berkeley, J. P. Beets, J. Bohnsack, R. Boulon, R. D. Brodeur, J. K. Brodziak, J. Field, D. Gleason, M. A. Hixon, W. L. Lindberg, M. Miller, L. Morgan. 2008. Vertical Zoning in Marine Protected Areas: Ecological Considerations For Balancing Pelagic Fishing With Conservation of Benthic Communities. Fisheries, 33(12):598-610. Hamel, O. S., K. R. Piner, J. R. Wallace. 2008. A robust deterministic model describing the bomb radiocarbon signal for use in fish age validation. Transactions of the American Fisheries Society, 137(3):852-859. Hard, J. J., M. R. Gross, M. Heino, R. Hilborn, R. G. Kope, R. Law, and J. D. Reynolds. 2008. Evolutionary consequences of fishing and their implications for salmon. Evolutionary Applications 1(2):388-408. Helser, T. E., I. J. Stewart, O. S. Hamel. 2008. Stock Assessment of Pacific Hake, Merluccius productus, (a.k.a Whiting) in U.S. and Canadian Waters in 2008. In Status of the Pacific Coast Groundfish Fishery through 2008, Stock Assessment and Fishery Evaluation: Stock Assessments, STAR Panel Reports, and Rebuilding Analyses. Pacific Fishery Managment Council, Portland, OR, 128 p. Holt, M.M., Noren, D., Veirs, V., Emmons, C., and Veirs, S. 2009. (Published online 22 Dec 2008). Speaking up: Killer whales (Orcinus orca) increase their call amplitude in response to vessel noise. Journal of the Acoustical Society of America (JASA) Express Letters. 125: EL27-EL32. Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, and J. J. Hard. 2008. Summary of 1998 coast wide coastal cutthroat trout status review conducted by the National Marine Fisheries Service. Pages 3-4 in P. J. Connolly, T. H. Williams, and R. E. Gresswell, editors. The 2005 coastal cutthroat trout symposium: status, management, biology, and conservation. Oregon Chapter, American Fisheries Society, Portland. Kemp, P. S., M. H. Gessel, B. P. Sandford, J. G. Williams. 2008. Fish behaviour and passage efficiency: lessons from North America. Hydrobiologia, (609)205-217. Kemp, P. S., J. G. Williams. 2008. Response Of Migrating Chinook Salmon (Oncorhynchus Tshawytscha) Smolts To In-Stream Structure Associated With Culverts. Kloehn, K.K., T.J. Beechie, S.A. Morley, H.J. Coe, and J.J. Duda. 2008. Influence of dams on river-floodplain dynamics in the Elwha River, Washington. Northwest Science 82 (Special Issue):224-235. Lee, J. S., B. A. Berejikian. 2008. Behavioural Syndrome Stability without Stability of Individual Behaviour: Consequences for Rockfish Stock Enhancement. Environmental Biology of Fishes, 82(2):179-186. Lee, J. S., B. A. Berejikian. 2008. Effects of the Rearing Environment on Average Behavior and Behavioral Variation in Steelhead. Journal of Fish Biology, 72:1736-1749. Lema, S. C., J. T. Dickey, I. R. Schultz, P. Swanson. 2008. Dietary exposure to the brominated flame retardant PBDE 47 alters plasma thyroid status and associated gene expression in the pituitary and brain of the teleost Pimephales promelas. Environmental Health Perspectives. Lema, S. C., J. T. Dickey, P. Swanson. 2008. Molecular cloning and sequence analysis of mulitple cDNA variants for thyroid-stimulating hormone B subunit (TSHB) in the fathead minnow (Pimephales promelas). General and Comparative Endocrinology, 155(2):472-480. Levin, P. S., M. J. Fogarty, G. C. Matlock. 2008. Integrated Ecosystem Assessments (White Paper). Levin, P. S., M. J. Fogarty, G. C. Matlock, M. Ernst. 2008. Integrated ecosystem assessments. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-92, 20 p. Luckenbach, J. A., F. W. Goetz, P. Swanson. 2008. Expressed sequence tags (ESTs) of follicle/interstitial cell enriched ovarian tissue from previtellogenic coho salmon. Cybium, 32(2 supplement):142-144. Luckenbach JA, Iliev DB, Goetz FW, Swanson P, 2008. Identification of differentially expressed ovarian genes during primary and early secondary oocyte growth in coho salmon, Oncorhynchus kisutch. Reproductive Biology and Endocrinology 6:2. Luckenbach, J. A., M. Kusakabe, P. Swanson, G. Young. 2008. Unilateral ovariectomy increases egg size and reduces follicular atresia in the semelparous coho salmon, Oncorhynchus kisutch. Journal of Experimental Zoology, 309A:468-476. McCarthy, S. G., J. Incardona, N. L. Scholz. 2008. Coastal storms, toxic turnoff, and the sustainable conservation of fish and fisheries. American Fisheries Society Symposium, 64:7-27. McClure, M. M., F. Utter, C. Baldwin, R. W. Carmichael, P. Hassemer, P. Howell, P. Spruell, T. Cooney, H. Schaller, C. Petrosky. 2008. Evolutionary Effects of Alternative Artificial Propagation Programs: Implications for the Viability of Endgered Anadromous Salmonids. Evolutionary Applications. McClure, M. M., S. M. Carlson, T. J. Beechie, G. R. Pess, J. C. Jorgensen, S. M. Sogard, S. E. Sultan, D. M. Holzer, J. Travis, B. L. Sanderson, M. E. Power, R. W. Carmichael. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications. McIntyre, J. K., D. H. Baldwin, J. P. Meador, N. L. Scholz. 2008. Chemosensory deprivation in juvenile coho salmon exposed to dissolved copper under varying water chemistry conditions. Environmental Science & Technology, 42(4):1352-1358. Miller, T. W., R. D. Brodeur, G. H. Rau. 2008. Carbon Stable Isotopes reveal Relative Contribution of Shelf-Slope Production to the Northern California Current Pelagic Community. Limnology and Oceanography, 53:1493-1503. Naish, K. A., and J. J. Hard. 2008. Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes. Fish and Fisheries 9:396-422. Neely, K. G., J. M. Myers, J. J. Hard, and K. D. Shearer. 2008. Comparison of growth, feed intake, and nutrient efficiency in a selected strain of coho salmon (Oncorhynchus kisutch) and its source stock. Aquaculture 283 (2008):134-140. Parnel, M. M., R. L. Emmett, R. D. Brodeur. 2008. Ichthyoplankton Community in the Columbia River Plume off Oregon: Effects of Fluctuating Oceanographic Conditions. Fishery Bulletin, 106:161-173. Parnel, M. M. R. L. Emmett, and R. D. Brodeur. 2008. Ichthyoplankton community in the Columbia River plume off Oregon: Effects of fluctuating oceanographic conditions. Fish. Bull. 106:161173 Pess, G. R., M. L. McHenry, T. J. Beechie, and J. Davies. 2008. Biological impacts of the Elwha River dams and potential salmonid responses to dam removal. Northwest Science 82 (Special Issue):72-90. Pool, S. S., R. D. Brodeur, N. L. Goodman, E. A. Daly. 2008. Abundance, distribution, and feeding patterns of juvenile coho salmon (Oncorhynchus kisutch) in the Juan de Fuca Eddy in relation to physical and biological conditions. Estuarine, Coastal and Shelf Science, 80:85-94. Poole, G.C., S.J. ODaniel, K.L. Jones, W.W. Woessner, E.S. Bernhardt, A.M. Helton, J.A. Stanford, B.R. Boer, and T.J. Beechie. 2008. Hydrologic spiraling: the role of multiple interactive flow paths in stream ecosystems. River Research and Applications 24: 1018-1031. Roni, P., M. McHenry, G. R. Pess, T. J. Beechie. 2008. Evaluating changes in salmon spawning habitat and spawners in the Elwha River following dam removal. Suntsov, A. V., R. D. Brodeur. 2008. Trophic ecology of three dominant myctophid species in the northern California Current region. Marine Ecology Progress Series, 373:81-96. Swanson, P., B. Campbell, K. D. Shearer, J. Dickey, B. R. Beckman, D. A. Larsen, L. K. Park, B. Berijikian. 2008. Application of Reproductive Technologies to Captive Breeding Programs for Converservation of Imperiled Stocks of Pacific Salmon. Cybium, 32(2, suppl.):279-282. Thrower, F. P., and J. J. Hard. 2009. Effects of a single event of close inbreeding on growth and survival in steelhead. Conservation Genetics 10:1299-1307. Waples, R. S., G. R. Pess, and T. Beechie. 2008. Evolutionary history of Pacific salmon in dynamic environments. Evolutionary Applications 1:189-206. Williams, J. G. 2008. Mitigating the effects of high-head dams on the Columbia River, USA: Experience from the trenches. Hydrobiologia, 609:241-251. Williams, J., R.W. Zabel, R.S. Waples. J.A. Hutchings, and W.P. Connor. 2008. Potential for anthropogenic disturbances to influence evolutionary change in the life history of a threatened salmonid. Evolutionary Applications 1:271-285. Top of Page 2007 Andrews, K. S., P. S. Levin, S. L. Katz, D. Farrer, V. Gallucci, G. Bargmann. 2007. Acoustic monitoring of sixgill shark movements in Puget Sound: evidence for localized movement. Canadian Journal of Zoology, 85(11):1136-1143. Auth, T. D., R. D. Brodeur, K. M. Fisher. 2007. Diel vertical distribution of an offshore ichthyoplankton community off the Oregon coast. Fishery Bulletin, 105(3):313-326. Berejikian, B. A., R. S. Brown, C. P. Tatara, S. J. Cooke. 2007. Effects of telemetry transmitter placement on egg retention of naturally spawning captively reared steelhead. North American Journal of Fisheries Management, 27:659-664. Berejikian, B. A., R. Endicott, D. M. VanDoornik, R. S. Brown, C. P. Tatara, J. Atkins. 2007. Spawning by female Chinook salmon can be detected by electromyogram telemetry. Transactions of the American Fisheries Society, 136:593-605. Berntson, E. A., P. S. Levin, P. Moran. 2007. Conservation of North Pacific rockfishes: Ecological genetics and stock structure. Proceedings of the workshop March 2-3, 2004, Seattle, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-80, 80 p. Brand, E. J., I. C. Kaplan, C. J. Harvey, P. S. Levin, E. A. Fulton, A. J. Hermann, J. C. Field. 2007. A spatially explicit ecosystem model of the California Current's food web and oceanography. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-84, 145 p. Brodeur, R. D., E. A. Daly, R. Schabetsberger, K. Mier. 2007. Interannual and interdecadal variability in juvenile coho salmon diets in relation to environmental changes in the Northern California Current. Fisheries Oceanography, 16:395-408. Brodeur, R. D., E. A. Daly, M. V. Sturdevant, T. W. Miller, J. H. Moss, M. Thiess, M. Trudel, L. A. Weitkamp, J. L. Armstrong, E. C. Norton. 2007. Regional comparisons of juvenile salmon feeding in coastal marine waters off the West Coast of North America. American Fisheries Society Symposium, 57:183-203. Brown, R.S., C.P. Tatara, J.R. Stephenson, and B.A. Berejikian. 2007. Evaluation of a new coded electromyogram transmitter for studying swimming behavior and energetics in fish. North American Journal of Fisheries Management 27:765-772. Davies, Jeremy R., Kerry M. Lagueux, Beth Sanderson, and Timothy J. Beechie, 2007. Modeling Stream Channel Characteristics From Drainage-Enforced DEMs in Puget Sound, Washington, USA. Journal of the American Water Resources Association (JAWRA) 43(2):414-426. Good, T. P., M. M. McClure, B. P. Sandford, K. Barnas, D. M. Marsh, B. A. Ryan, E. Casillas. 2007. Quantifying the effect of Caspian tern predation on endangered and threatened Pacific salmonids in the Columbia River. Endangered Species Research, 3:11-21. Good, T. P., T. J. Beechie, P. McElhany, M. M. McClure, M. H. Ruckelshaus. 2007. Recovery planning for Endangered Species Act-listed Pacific salmon: Using science to inform goals and strategies. Fisheries, 32:426-440. Gustafson, R. G., R. S. Waples, J. M. Myers, L. A. Weitkamp, G. J. Bryant, O. W. Johnson, J. J. Hard. 2007. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology, 21(4):1009-1020. (Appendix S1 | Appendix S2 | Appendix S3) Hall, J.E., D.M. Holzer, and T.J. Beechie. 2007. Predicting river floodplain and lateral channel migration for salmon habitat conservation. Journal of the American Water Resources Association. 43(3):786-797. Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2007. Status review of Puget Sound steelhead (Oncorhynchus mykiss). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-81, 117 p. Hecht, S. A., D. H. Baldwin, C. A. Mebane, T. Hawkes, S. J. Gross, N. L. Scholz. 2007. 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Swanson, B. T. Walther. 1994. Plasma levels of eggshell ZR-proteins, estradiol-17β, and gonadotropins during an annual reproductive cycle of Atlantic salmon (Salmo salar). Journal of Experimental Zoology, 268:59-70. Prentice, E. F., D. J. Maynard, S. L. Downing, D. A. Frost, M. S. Kellett, D. A. Bruland, P. Sparks-Mcconkey, F. W. Waknitz, R. N. Iwamoto, K. W. McIntyre, N. N. Paasch. 1994. A study to determine the biological feasibility of a new fish tagging system (1990-93). Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 250 p. Slater, C. H., C. B. Schreck, P. Swanson. 1994. Plasma profiles of sex steroids and gonadotropins in maturing female spring chinook salmon (Oncorhynchus tshawytscha). Comparative Biochemistry and Physiology, 109A:167-175. Swan, G. A., M. B. Eppard, P. A. Ocker, R. N. Iwamoto, B. P. Sandford. 1994. Biological evluation of the prototype gatewell lift-tank system at lower Granite Dam, 1994. Coastal Zone and Estuarine Studies Division, Northwest Fisheries Science Center, Seattle, WA, 41 p. Swan, G. A., L. K. Timme, R. N. Iwamoto, L. C. Stuehrenberg, E. E. Hockersmith, B. L. Iverson, B. P. Sandford. 1994. Wells Dam radio-telemetry study, 1992. Public Utility District No. 1 of Douglas County, 70 p. Swanson, P. 1994. Radioimmunoasays for fish growth hormone, prolactin and somatolactin. Pages 545-556 in Hochachka, P. W., T. P. Mommsen. (Eds.) Biochemistry and Molecular Biology of Fishes, 3: Analytical Techniques. Elsevier, New York. Williams, J. G., M. H. Gessel. 1994. Fish diversion and screening devices: Is there a relationship to fish behavior? Pages 135-140 in Proceedings of the Symposium on Fish Passage Policy and Technology, 1-2 September 1993, Portland, OR. Am. Fish Soc., Bioeng. Sec, Bethesda, MD. Top of Page 1993 Iwamoto, R. N., J. G. Williams. 1993. Juvenile salmonid passage and survival through turbines. Report to the U. S. Army Corps of Engineers, Contract E86920049, 27 p. Naito, N., K. Suzuki, M. Nozaki, P. Swanson, H. Kawauchi, Y. Nakai. 1993. Ultrastructural characteristics of two distinct gonadotropes (GTH I- and GTH II-cells) in the pituitary of rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry, 11:241-246. Planas, J., P. Swanson, W. W. Dickhoff. 1993. Regulation of testicular steroid production in vitro by gonadotropins (GTH I and GTH II) and cyclic AMP in coho salmon (Oncorhynchus kisutch). General and Comparative Endocrinology, 91:8-24. Rand-Weaver, M., P. Swanson. 1993. Plasma somatolactin levels in coho salmon (Oncorhynchus kisutch) during smoltification and sexual maturation. Fish Physiology and Biochemistry, 11(1-6):175-182. Saga, T., Y. Oota, M. Nozaki, P. Swanson. 1993. Salmonid pituitary gonadotrophs. III. Chronological appearance of GTH I and other adenohypophyseal hormones in the pituitary of the developing rainbow trout (Oncorhynchus mykiss irideus). General and Comparative Endocrinology, 92:233-241. Top of Page 1992 Hard, J. J., R. P. Jones Jr., R. S. Waples. 1992. Pacific Salmon and Artificial Propagation Under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-2. Noso, T., Y. Hirano, P. Swanson, V. Lance, H. Kawauchi. 1992. Isolation and characterization of glycosylated and non-glycosylated prolactins from alligator and crocodile pituitaries. International Journal of Peptide and Protein Research, 39:250-257. Planas, J., P. Swanson, M. Rand-Weaver, W. W. Dickhoff. 1992. Somatolactin stimulates in vitro gonadal steroidogenesis in coho salmon, Oncorhnynchus kisutch. General and Comparative Endocrinology, 87:1-5. Rand-Weaver, M., P. Swanson, H. Kawauchi, W. W. Dickhoff. 1992. Somatolactin, a novel pituitary protein: Purification and plasma levels during reproductive maturation of coho salmon. Journal of Endocrinology, 133:393-403. Rand-Weaver, M., P. Swanson, H. Kawauchi, W. W. Dickhoff. 1992. Somatolactin, a novel pitutary protein: purification and plasma levels during reproductive maturation of coho salmon. Journal of Endocrinology, 133:393-403. Yan, L. G., P. Swanson, W. W. Dickhoff. 1992. A two-receptor model for salmon gonadotropins (GTH I and GTH II). Biology of Reproduction, 47:418-427. Top of Page 1991 Gessel, M. H., J. G. Williams, D. A. Brege, R. Krcma, D. R. Chambers. 1991. Juvenile salmonid guidance at the Bonneville Dam Second Powerhouse, Columbia River, 1983-1989. North American Journal of Fisheries Management, 11:400-412. Lovejoy, D. A., W. H. Fischer, D. B. Parker, J. E. McRory, M. Park, V. Lance, P. Swanson, J. E. River, N. M. Sherwood. 1991. Primary structure of two forms of gonadotropin-releasing hormone from brains of American alligator (Alligator mississippiensis). Regulatory Peptides, 33:105-116. Planas, J., P. Swanson, W. W. Dickhoff, A. P. Scott, J. Sumpter. 1991. Regulation of testicular steroidogenesis by coho salmon gonadotropins, GTH I and GTH II, in vitro. Page 103 in Reproductive Physiology of Fish. Univ. of East Anglia, Norwich, England. Swanson, P., K. Suzuki, H. Kawauchi, W. W. Dickhoff. 1991. Isolation and characterization of two coho salmon gonadotropins, GTH I and GTH II. Biology of Reproduction, 44:29-38. Swanson, P., A. P. Scott, J. Sumpter. 1991. Salmon gonadotropins: Reconciling old and new ideas. Pages 2-7 in Reproductive Physiology of Fish. Univ. of East Anglia, Norwich, England. Tyler, C., J. Sumpter, H. Kawauchi, P. Swanson. 1991. Involvement of gonadotropins I and II in the uptake of vitellogenin into vitellogenic oocytes of rainbow trout, Oncorhynchus mykiss. General and Comparative Endocrinology, 84:291-299. Yan, L. G., P. Swanson, W. W. Dickhoff. 1991. Binding of gonadotropins (GTH I and GTH II) to coho salmon gonadal membrane preparations. Journal of Experimental Zoology, 258:221-230. Top of Page 1990 Dickhoff, W. W., P. Swanson. 1990. Functions of salmon pituitary glycoprotein hormones: The maturational surge hypothesis. Pages 342: 349-356 in Epple, A., C. G. Scanes, M. H. Stetson. (Eds.) Progress in Comparative Endocrinology, Progress in Clinical and Biological Research. Gessel, M. H., D. A. Brege, B. H. Monk, J. G. Williams. 1990. Continued studies to evaluate the juvenile bypass systems at Bonneville Dam - 1989. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Portland District, Seattle, WA, Contract DACW77-88-F-9999, 34 p. Nozaki, M., N. Naito, P. Swanson, K. Miyata, Y. Nakai, Y. Oota, K. Suzuki, H. Kawauchi. 1990. Salmonid pituitary gonadotroph cells: I. Distinct cellular distributions of two gonadotropins, GTH I and GTH II. General and Comparative Endocrinology, 77:348-357. Nozaki, M., N. Naito, P. Swanson, W. W. Dickhoff, Y. Nakai, K. Suzuki, H. Kawauchi. 1990. Salmonid pituitary gonadotroph cells: II. Ontogeny of GTH I and GTH II cells in the rainbow trout (Salmo gairdneri irideus). General and Comparative Endocrinology, 77:358-367. Top of Page 1989 Dickhoff, W. W., L. G. Yan, E. M. Plisetskaya, C. V. Sullivan, P. Swanson, A. Hara, M. G. Bernard. 1989. Relationship between metabolic and reproductive hormones in salmonid fish. Fish Physiology and Biochemistry, 7:147-155. Gessel, M. H., B. H. Monk, D. A. Brege, J. G. Williams. 1989. Fish guidance efficiency studies at Bonneville First and Second Powerhouses, 1988. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Seattle, WA, Delivery Order DACW57-87-F-0322, 36 p. Kawauchi, H., K. Suzuki, H. Itoh, P. Swanson, N. Naito, Y. Nagahama, M. Nozaki, Y. Nakai, S. Itoh. 1989. The duality of teleost gonadotropins. Fish Physiology and Biochemistry, 7:29-38. Swanson, P., M. G. Bernard, M. Nozaki, K. Suzuki, H. Kawauchi, W. W. Dickhoff. 1989. Gonadotropins I and II in juvenile coho salmon. Fish Physiology and Biochemistry, 7:169-176. Top of Page 1988 Gessel, M. H., B. H. Monk, J. G. Williams. 1988. Evaluation of the juvenile fish collection and bypass systems at Bonneville Dam - 1987. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Contract DACW57-87-F-0322, 131 p. Kawauchi, H., K. Suzuki, H. Itoh, P. Swanson. 1988. Duality of salmon pituitary gonadotropins. Pages 227-232 in Imura, H., e. al. (Eds.) Progress in Endocrinology. Elsevier Science Publishers, New York. Kawauchi, H., K. Miyazima, P. Swanson, H. Cook, T. Kaneko, R. E. Peter, R. Suzuki, T. Hirano. 1988. Isolation and characterization of carp prolactin. General and Comparative Endocrinology, 70:407-417. Plisetskaya, E. M., P. Swanson, M. G. Bernard, W. W. Dickhoff. 1988. Insulin in coho salmon (Oncorhynchus kisutch) during the parr to smolt transformation. Aquaculture, 72:151-164. Swanson, P., E. G. Grau, L. M. Helms, W. W. Dickhoff. 1988. Thyrotropic activity of salmon glycoprotein hormones in the Hawaiian parrotfish thyroid in vitro. Journal of Experimental Zoology, 245:194-199. Williams, J. G., M. H. Gessel, D. R. Chambers. 1988. Juvenile salmonid bypass system research at Bonneville Second Powerhouse, Columbia River. Pages [1-41]-[1-54] in Proceedings: Fish protection at steam and hydroelectric power plants. Electric Power Research Institute, Palo Alto, CA. Top of Page 1987 Kawauchi, H., K. Suzuki, H. Itoh, P. Swanson, Y. Nagahama. 1987. Duality of salmon pituitary gonadotropins. Pages 15-18 in Ohnishi, E., Y. Nagahama, H. Ishizaki. (Eds.) Proceedings of the 1st Congress of the Asia and Oceania Society of Comparative Endocrinology. Nagoya University Corp, Japan. Sullivan, C. V., R. N. Iwamoto, W. W. Dickhoff. 1987. Thyroid hormones in blood plasma of developing salmon embryos. General and Comparative Endocrinology, 65:337-345. Swanson, P., K. Suzuki, H. Kawauchi. 1987. Effects of des Gly10[D-Ala6] GnRH ethylamide on secretion of two distinct gonadotropins by salmonid pituitaries in vitro. Pages 93-94 in Ohnishi, E., Y. Nagahama, H. Ishizaki. (Eds.) Proceedings of the 1st Congress of the Asia and Oceania Society of Comparative Endocrinology. Nagoya University Corp., Japan. Swanson, P., W. W. Dickhoff, A. Gorbman. 1987. Pituitary thyrotropin and gonadotropin of coho salmon (Oncorhynchus kisutch): separation by chromatofocusing. General and Comparative Endocrinology, 65:269-287. Swanson, P., W. W. Dickhoff. 1987. Variation in thyroid response to thyroid-stimulating hormone in juvenile coho salmon (Oncorhynchus kisutch). General and Comparative Endocrinology, 68:473-485. Top of Page

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