Generic

In press

Waples, R. S., M. M. McClure, T. C. Wainwright, P. McElhany, P. W. Lawson. In press. Integrating evolutionary and ecological considerations in recovery planning for Pacific salmon. Cambridge University Press

2009

Steel, E. A., T. J. Beechie, M. H. Ruckelshaus, A. H. Fullerton, P. McElhany, P. Roni. 2009. Mind the gap: Uncertainty and model communication between managers and scientists. American Fisheries Society Symposium. 71 357-372 pp.

Journal Article

In press

Ashe, E., D. P. Noren, R. Williams. In press. Animal Behaviour And Protected Areas: Habitat Conservation For An Endangered Killer Whale Population. Animal Conservation.

Baldwin, D. H., J. A. Spromberg, T. K. Collier, N. L. Scholz. In press. A fish of many scales: extrapolating sublethal pesticide exposures to the productivity of wild salmon populations. Ecological Applications.

Beechie, T.J., D.A. Sear, J.D. Olden, G.R. Pess, J.M. Buffington, H. Moir, P. Roni, and M.M. Pollock. In press. Process-based principles for restoring dynamic river systems. BioScience.

Chittaro, P. M., I. C. Kaplan, A. A. Keller, P. S. Levin. In press. Trade-offs between species conservation and the size of marine protected areas. Conservation Biology.

Daly, E. A., R. D. Brodeur, L. A. Weitkamp. In press. Ontogenetic shifts in diets of juvenile and subadult coho (Oncorhynchus kisutch) and Chinook salmon (O. tshawytchsa) in coastal marine waters: Important for marine survival? Transactions of the American Fisheries Society, 138:1420-1438.

Eldridge, W. H., J. J. Hard, K. A. Naish. In press. Fishery-induced evolution in Chinook salmon: the role of harvest gear, location and genetic correlations among life history traits. Ecological Applications.

Enders, E. C., M. H. Gessel, J. G. Williams. In press. The behavioural response of downstream migrating fall Chinook salmon smolt to accelerating flows. Canadian Journal of Fisheries and Aquatic Sciences.

Lee, J. S., B. A. Berejikian. In press. Structural complexity in relation to the habitat preferences, territoriality, and hatchery rearing of juvenile China rockfish (Sebastes nebulosus). Environmental Biology of Fishes, 84:411-419.

Lema, S. C., J. T. Dickey, I. R. Schultz, P. Swanson. In press. Thyroid hormone regulation of mRNAs encoding thyrotropin ²-subunit, glycoprotein ±-subunit and thyroid hormone receptors ± and ² in brain, pituitary gland, liver and gonads of an adult teleost, Pimephales promelas. Journal of Endocrinology.

Luckenbach, J. A., J. T. Dickey, P. Swanson. In press. Regulation of pituitary GnRH receptor and gonadotropin subunits by IGF1 and GnRH in prepubertal male coho salmon. General and Comparative Endocrinology.

Roni, P., K. Hanson, T. J. Beechie. In press. Global review of the physical and biological effectiveness of stream habitat rehabiliataion techniques. North American Journal of Fisheries Management, 28:856-890.

Tierney, K. B., D. H. Baldwin, T. J. Hara, P. S. Ross, N. L. Scholz, C. J. Kennedy. In press. Olfactory Toxicity In Fishes. Aquatic Toxicology.

Tyson, R., C. E. Jordan, J. Hebert. In press. Modelling anguilliform swimming at intermediate Reynolds number: A review and new approach using the immersed boundary method. Computer Methods in Applied Mechanics and Engineering.

Waples, R. S., D. W. Jensen, M. M. McClure. In press. Empirical evidence for eco-evolutionary interactions and tradeoffs: Annual variation in productivity reduces effective population size in Chinook salmon. Ecology.

Williams, G. D., K. S. Andrews, D. Farrer, P. S. Levin. In press. Catch Rates And Population Demographics Of Bluntnose Sixgill Sharks. Transactions of the American Fisheries Society.

2009

Allendorf, F. W., J. J. Hard. 2009. Human-induced evolution caused by unnatural selection through harvest of wild animals. Proceedings of the National Academy of Sciences, USA, 106(Supplement 1):9987-9994.

Andrews, K. S., G. D. Williams, D. Farrer, N. Tolimieri, C. J. Harvey, G. Bargmann, P. S. Levin. 2009. Diel activity patterns of sixgill sharks Hexanchus griseus: the ups-and-downs of an apex predator. Animal Behavior, 78(2009):525-536.

Benkwitt, C. E., R. D. Brodeur, T. P. Hurst, E. A. Daly. 2009. Diel feeding chronology, gastric evacuation and daily food consumption of juvenile Chinook salmon in Oregon coastal waters. Transactions of the American Fisheries Society, 138:111-120.

Berejikian, B. A., D. M. Van Doornik, J. A. Scheurer, R. Bush. 2009. Reproductive behavior and relative reproductive success of natural - and - hatchery - origin Hood Canal summer chum slamon (Oncorhynchus keta). Canadian Journal of Fisheries and Aquatic Sciences, 66:781789.

Chittaro, P. M., R. J. Finley, P. S. Levin. 2009. Spatial and temporal patterns in the contribution of fish from their juvenile habitats. Oecologia, 160:49-61.

Colman, J. R., D. H. Baldwin, L. L. Johnson, N. L. Scholz. 2009. Effects of the synthetic estrogen, 17±-ethinylestradiol, on aggression and courtship behavior in male zebrafish (Danio rerio). Aquatic Toxicology, 91(4):346-354.

Halvorsen, M., L. E. Wysocki, C. M. Stehr, D. H. Baldwin, D. R. Chicoine, N. L. Scholz, A. N. Popper. 2009. Barging Effects on Sensory Systems of Chinook Salmon Smolts. Transactions of the American Fisheries Society, 138:777-789.

Honea, J., J. Jorgensen, M. McClure, T. Cooney, K. Engie, & R. Hilborn. 2009. Evaluating habitat effects on population status: Influence of habitat restoration on spring-run Chinook salmon. Freshwater Biology 54:1576-1592.

Incardona, J., M. G. Carls, H. L. Day, C. A. Sloan, J. L. Bolton, T. K. Collier, N. L. Scholz. 2009. Cardiac arrhythmia is the primary response of embryonic Pacific herring (Clupea pallasi) exposed to crude oil during weathering. Environmental Science & Technology, 43(1):201-207.

Jorgensen, J., J. Honea, M. McClure, T. Cooney, D. Holzer, & K. Engie. 2009. Linking landscape-level change to habitat quality: an evaluation of restoration actions on freshwater habitat of spring-run Chinook salmon. Freshwater Biology 54:1560-1575.

Kemp, P. S., J. G. Williams. 2009. Illumination Influences The Ability Of Migrating Juvenile Salmonids To Pass A Submerged Experimental Weir.

Kendall, N.W., J. J. Hard, and T. P. Quinn. 2009. Quantifying six decades of fishery selection for size and age at maturity in sockeye salmon. Evolutionary Applications 2:523-536.

Laetz, C. A., D. H. Baldwin, T. K. Collier, V. Hebert, J. D. Stark, N. L. Scholz. 2009. The synergistic toxicity of pesticide mixtures: implications for ecological risk assessment and the conservation of threatened Pacific salmon. Environmental Health Perspectives, 117(3):348-353.

Linbo, T. L., D. H. Baldwin, J. K. McIntyre, N. L. Scholz. 2009. Effects of water hardness, alkalinity, and dissolved organic carbon on the toxicity of copper to the lateral line of developing fish. Environmental Toxicology and Chemistry.

Noren, D. P., L. Rea, T. R. Loughlin. 2009. A model to predict fasting capacities and utilization of body energy stores in weaned Steller sea lions (Eumetopias jubatus) during periods of reduced prey availability. Canadian Journal of Zoology, 87:852-864.

Noren, D. P., A. H. Johnson, D. Rehder, A. Larson. 2009. Close approaches by vessels elicit surface active behaviors by Southern Resident killer whales. Endangered Species Research, 8(3):179-192.

Phillips, A. J., R. D. Brodeur, A. V. Suntsov. 2009. Micronekton community structure in the epipelagic zone of the northern California Current upwelling system. Progress in Oceanography, 80:74-92.

Stehr, C. M., T. L. Linbo, D. H. Baldwin, N. L. Scholz, J. Incardona. 2009. Evaluating the effects of forestry herbicides on fish development using rapid phenotypic screens. North American Journal of Fisheries Management, 29:975-984.

Tolimieri, N., K. S. Andrews, G. D. Williams, S. L. Katz, P. S. Levin. 2009. Home range size and patterns of space use for lingcod, copper rockfish and quillback rockfish in Puget Sound in relation to diel and tidal cycles. Marine Ecology Progress Series, 380:229-243.

Waples, R. S., T. Beechie, and G. R. Pess. 2009. Evolutionary history, habitat disturbance regimes, and anthropogenic changes: What do these mean for resilience of Pacific salmon populations? Ecology and Society 14(1): 3 [online] URL: http://www.ecologyandsociety.org/vol14/iss1/art3/

Williams, R., D. P. Noren. 2009. Swimming speed, respiration rate and estimated cost of transport in adult killer whales. Marine Mammal Science.

2008

Acker, S., T. Beechie, P. Shafroth. 2008. Effects of a natural dam-break flood on geomorphology and vegetation on the Elwha River, Washington, U.S.A. Special Issue on Dam Removal and Ecosystem Restoration in the Elwha River Watershed, Washington State, Northwest Science, 82:210-223

Araki, H., B. A. Berejikian, M. J. Ford, M. Blouin. 2008. Fitness of hatchery-reared salmonids in the wild. Evolutionary Applications, 1:342-355.

Beechie, T.J., M.M. Pollock, S. Baker. 2008. Channel incision, evolution and potential recovery in the Walla Walla and Tucannon River basins, northwestern USA. Earth Surface Processes and Landforms 33: 784-800.

Beechie, T.J., H. Moir, and G. Pess. 2008. Hierarchical physical controls on salmonid spawning location and timing. Pages 83-102 in D. Sear and P. DeVries, eds. Salmonid Spawning Habitat in Rivers: Physical Controls, Biological Responses, and Approaches to Remediation. American Fisheries Society, Symposium 65, Bethesda, Maryland.

Beechie, T., G. Pess, P. Roni, and G. Giannico. 2008. Setting river restoration priorities: a review of approaches and a general protocol for identifying and prioritizing actions. N. Am. J. Fish. Mgmt. 28:891-905.

Berejikian, B. A., T. Johnson, R. Endicott, J. Lee. 2008. Increases in Steelhead Redd Abundance Resulting from Two Conservation Hatchery Strategies in the Hamma Hamma River, WA. Canadian Journal of Fisheries and Aquatic Sciences, 65:754-764.

Brodeur, R. D., W. T. Peterson, T. D. Auth, H. L. Soulen, M. M. Parnel, A. A. Emerson. 2008. Abundance and diversity of coastal fish larvae as indicators of recent changes in ocean and climate conditions in the Oregon upwelling zone. Marine Ecology Progress Series, 366:187-202.

Brodeur, R. D., C. L. Suchman, D. C. Reese, T. W. Miller, E. A. Daly. 2008. Spatial overlap and trophic interaction between pelagic fish and large jellyfish in the northern California Current. Marine Biology, 154:649-659.

Carls, M. G., L. Holland, M. Larsen, T. K. Collier, N. L. Scholz, J. Incardona. 2008. Fish embryos are damaged by dissolved PAHs, not oil particles. Aquatic Toxicology, 88:121-127.

Courbois, J., S. L. Katz, D. J. Isaak, A. Steel, R. F. Thurow, M. Rub, T. Olsen, C. E. Jordan. 2008. Evaluating probability sampling strategies for estimating redd counts: an example with Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.

Ford MJ, Hard JJ, Boelts B, LaHood E, Miller J. 2008. Estimates of natural selection in a salmon population in captive and natural environments. Conservation Biology 22:783-794

Grober-Dunsmore, R., L. Wooninck, C. Wahle, C. Ainsworth, S. Berkeley, J. P. Beets, J. Bohnsack, R. Boulon, R. D. Brodeur, J. K. Brodziak, J. Field, D. Gleason, M. A. Hixon, W. L. Lindberg, M. Miller, L. Morgan. 2008. Vertical Zoning in Marine Protected Areas: Ecological Considerations For Balancing Pelagic Fishing With Conservation of Benthic Communities. Fisheries, 33(12):598-610.

Hamel, O. S., K. R. Piner, J. R. Wallace. 2008. A robust deterministic model describing the bomb radiocarbon signal for use in fish age validation. Transactions of the American Fisheries Society, 137(3):852-859.

Hard, J. J., M. R. Gross, M. Heino, R. Hilborn, R. G. Kope, R. Law, and J. D. Reynolds. 2008. Evolutionary consequences of fishing and their implications for salmon. Evolutionary Applications 1(2):388-408.

Holt, M.M., Noren, D., Veirs, V., Emmons, C., and Veirs, S. 2009. (Published online 22 Dec 2008). Speaking up: Killer whales (Orcinus orca) increase their call amplitude in response to vessel noise. Journal of the Acoustical Society of America (JASA) Express Letters. 125: EL27-EL32.

Kemp, P. S., M. H. Gessel, B. P. Sandford, J. G. Williams. 2008. Fish behaviour and passage efficiency: lessons from North America. Hydrobiologia, (609)205-217.

Kemp, P. S., J. G. Williams. 2008. Response Of Migrating Chinook Salmon (Oncorhynchus Tshawytscha) Smolts To In-Stream Structure Associated With Culverts.

Kloehn, K.K., T.J. Beechie, S.A. Morley, H.J. Coe, and J.J. Duda. 2008. Influence of dams on river-floodplain dynamics in the Elwha River, Washington. Northwest Science 82 (Special Issue):224-235.

Lee, J. S., B. A. Berejikian. 2008. Behavioural Syndrome Stability without Stability of Individual Behaviour: Consequences for Rockfish Stock Enhancement. Environmental Biology of Fishes, 82(2):179-186.

Lee, J. S., B. A. Berejikian. 2008. Effects of the Rearing Environment on Average Behavior and Behavioral Variation in Steelhead. Journal of Fish Biology, 72:1736-1749.

Lema, S. C., J. T. Dickey, I. R. Schultz, P. Swanson. 2008. Dietary exposure to the brominated flame retardant PBDE 47 alters plasma thyroid status and associated gene expression in the pituitary and brain of the teleost Pimephales promelas. Environmental Health Perspectives.

Lema, S. C., J. T. Dickey, P. Swanson. 2008. Molecular cloning and sequence analysis of mulitple cDNA variants for thyroid-stimulating hormone B subunit (TSHB) in the fathead minnow (Pimephales promelas). General and Comparative Endocrinology, 155(2):472-480.

Luckenbach, J. A., F. W. Goetz, P. Swanson. 2008. Expressed sequence tags (ESTs) of follicle/interstitial cell enriched ovarian tissue from previtellogenic coho salmon. Cybium, 32(2 supplement):142-144.

Luckenbach JA, Iliev DB, Goetz FW, Swanson P, 2008. Identification of differentially expressed ovarian genes during primary and early secondary oocyte growth in coho salmon, Oncorhynchus kisutch. Reproductive Biology and Endocrinology 6:2.

Luckenbach, J. A., M. Kusakabe, P. Swanson, G. Young. 2008. Unilateral ovariectomy increases egg size and reduces follicular atresia in the semelparous coho salmon, Oncorhynchus kisutch. Journal of Experimental Zoology, 309A:468-476.

McCarthy, S. G., J. Incardona, N. L. Scholz. 2008. Coastal storms, toxic turnoff, and the sustainable conservation of fish and fisheries. American Fisheries Society Symposium, 64:7-27.

McClure, M. M., F. Utter, C. Baldwin, R. W. Carmichael, P. Hassemer, P. Howell, P. Spruell, T. Cooney, H. Schaller, C. Petrosky. 2008. Evolutionary Effects of Alternative Artificial Propagation Programs: Implications for the Viability of Endgered Anadromous Salmonids. Evolutionary Applications.

McClure, M. M., S. M. Carlson, T. J. Beechie, G. R. Pess, J. C. Jorgensen, S. M. Sogard, S. E. Sultan, D. M. Holzer, J. Travis, B. L. Sanderson, M. E. Power, R. W. Carmichael. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications.

McIntyre, J. K., D. H. Baldwin, J. P. Meador, N. L. Scholz. 2008. Chemosensory deprivation in juvenile coho salmon exposed to dissolved copper under varying water chemistry conditions. Environmental Science & Technology, 42(4):1352-1358.

Miller, T. W., R. D. Brodeur, G. H. Rau. 2008. Carbon Stable Isotopes reveal Relative Contribution of Shelf-Slope Production to the Northern California Current Pelagic Community. Limnology and Oceanography, 53:1493-1503.

Naish, K. A., and J. J. Hard. 2008. Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes. Fish and Fisheries 9:396-422.

Neely, K. G., J. M. Myers, J. J. Hard, and K. D. Shearer. 2008. Comparison of growth, feed intake, and nutrient efficiency in a selected strain of coho salmon (Oncorhynchus kisutch) and its source stock. Aquaculture 283 (2008):134-140.

Parnel, M. M., R. L. Emmett, R. D. Brodeur. 2008. Ichthyoplankton Community in the Columbia River Plume off Oregon: Effects of Fluctuating Oceanographic Conditions. Fishery Bulletin, 106:161-173.

Parnel, M. M. R. L. Emmett, and R. D. Brodeur. 2008. Ichthyoplankton community in the Columbia River plume off Oregon: Effects of fluctuating oceanographic conditions. Fish. Bull. 106:161173

Pess, G. R., M. L. McHenry, T. J. Beechie, and J. Davies. 2008. Biological impacts of the Elwha River dams and potential salmonid responses to dam removal. Northwest Science 82 (Special Issue):72-90.

Pool, S. S., R. D. Brodeur, N. L. Goodman, E. A. Daly. 2008. Abundance, distribution, and feeding patterns of juvenile coho salmon (Oncorhynchus kisutch) in the Juan de Fuca Eddy in relation to physical and biological conditions. Estuarine, Coastal and Shelf Science, 80:85-94.

Poole, G.C., S.J. ODaniel, K.L. Jones, W.W. Woessner, E.S. Bernhardt, A.M. Helton, J.A. Stanford, B.R. Boer, and T.J. Beechie. 2008. Hydrologic spiraling: the role of multiple interactive flow paths in stream ecosystems. River Research and Applications 24: 1018-1031.

Suntsov, A. V., R. D. Brodeur. 2008. Trophic ecology of three dominant myctophid species in the northern California Current region. Marine Ecology Progress Series, 373:81-96.

Swanson, P., B. Campbell, K. D. Shearer, J. Dickey, B. R. Beckman, D. A. Larsen, L. K. Park, B. Berijikian. 2008. Application of Reproductive Technologies to Captive Breeding Programs for Converservation of Imperiled Stocks of Pacific Salmon. Cybium, 32(2, suppl.):279-282.

Thrower, F. P., and J. J. Hard. 2009. Effects of a single event of close inbreeding on growth and survival in steelhead. Conservation Genetics 10:1299-1307.

Waples, R. S., G. R. Pess, and T. Beechie. 2008. Evolutionary history of Pacific salmon in dynamic environments. Evolutionary Applications 1:189-206.

Williams, J. G. 2008. Mitigating the effects of high-head dams on the Columbia River, USA: Experience from the trenches. Hydrobiologia, 609:241-251.

Williams, J., R.W. Zabel, R.S. Waples. J.A. Hutchings, and W.P. Connor. 2008. Potential for anthropogenic disturbances to influence evolutionary change in the life history of a threatened salmonid. Evolutionary Applications 1:271-285.

2007

Andrews, K. S., P. S. Levin, S. L. Katz, D. Farrer, V. Gallucci, G. Bargmann. 2007. Acoustic monitoring of sixgill shark movements in Puget Sound: evidence for localized movement. Canadian Journal of Zoology, 85(11):1136-1143.

Auth, T. D., R. D. Brodeur, K. M. Fisher. 2007. Diel vertical distribution of an offshore ichthyoplankton community off the Oregon coast. Fishery Bulletin, 105(3):313-326.

Berejikian, B. A., R. S. Brown, C. P. Tatara, S. J. Cooke. 2007. Effects of telemetry transmitter placement on egg retention of naturally spawning captively reared steelhead. North American Journal of Fisheries Management, 27:659-664.

Berejikian, B. A., R. Endicott, D. M. VanDoornik, R. S. Brown, C. P. Tatara, J. Atkins. 2007. Spawning by female Chinook salmon can be detected by electromyogram telemetry. Transactions of the American Fisheries Society, 136:593-605.

Brodeur, R. D., E. A. Daly, R. Schabetsberger, K. Mier. 2007. Interannual and interdecadal variability in juvenile coho salmon diets in relation to environmental changes in the Northern California Current. Fisheries Oceanography, 16:395-408.

Brodeur, R. D., E. A. Daly, M. V. Sturdevant, T. W. Miller, J. H. Moss, M. Thiess, M. Trudel, L. A. Weitkamp, J. L. Armstrong, E. C. Norton. 2007. Regional comparisons of juvenile salmon feeding in coastal marine waters off the West Coast of North America. American Fisheries Society Symposium, 57:183-203.

Brown, R.S., C.P. Tatara, J.R. Stephenson, and B.A. Berejikian. 2007. Evaluation of a new coded electromyogram transmitter for studying swimming behavior and energetics in fish. North American Journal of Fisheries Management 27:765-772.

Davies, Jeremy R., Kerry M. Lagueux, Beth Sanderson, and Timothy J. Beechie, 2007. Modeling Stream Channel Characteristics From Drainage-Enforced DEMs in Puget Sound, Washington, USA. Journal of the American Water Resources Association (JAWRA) 43(2):414-426.

Good, T. P., M. M. McClure, B. P. Sandford, K. Barnas, D. M. Marsh, B. A. Ryan, E. Casillas. 2007. Quantifying the effect of Caspian tern predation on endangered and threatened Pacific salmonids in the Columbia River. Endangered Species Research, 3:11-21.

Good, T. P., T. J. Beechie, P. McElhany, M. M. McClure, M. H. Ruckelshaus. 2007. Recovery planning for Endangered Species Act-listed Pacific salmon: Using science to inform goals and strategies. Fisheries, 32:426-440.

Gustafson, R. G., R. S. Waples, J. M. Myers, L. A. Weitkamp, G. J. Bryant, O. W. Johnson, J. J. Hard. 2007. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology, 21(4):1009-1020. (Appendix S1 | Appendix S2 | Appendix S3)

Hall, J.E., D.M. Holzer, and T.J. Beechie. 2007. Predicting river floodplain and lateral channel migration for salmon habitat conservation. Journal of the American Water Resources Association. 43(3):786-797.

Krahn, M. M., M. B. Hanson, R. W. Baird, R. H. Boyer, D. G. Burrows, C. K. Emmons, J. K. Ford, L. L. Jones, D. P. Noren, P. S. Ross, G. S. Schorr, T. K. Collier. 2007. Persistent organic pollutants and stable isotope ratios in biopsy samples (2004-2006) from Southern Resident killer whales. Marine Pollution Bulletin, 54(12):1903-1911.

Labenia, J. S., D. H. Baldwin, B. L. French, J. W. Davis, N. L. Scholz. 2007. Behavioral impairment and increased predation mortality in cutthroat trout exposed to carbaryl. Marine Ecology Progress Series, 329:1-11.

Lefebvre, K. A., D. P. Noren, I. R. Schultz, S. M. Bogard, B. L. Eberhart. 2007. Uptake, tissue distribution and excretion of domoic acid after oral exposure in coho salmon (Oncorhynchus kisutch). Aquatic Toxicology, 81:266-274.

Lema, S. C., I. R. Schultz, N. L. Scholz, J. Incardona, P. Swanson. 2007. Cardiac arrhythmia, spinal defects and changes in cerebrospinal fluid flow in fish larvae following embryonic exposure to 2,2',4,4'-tetrabromodiphenyl ether (PBDE 47). Aquatic Toxicology, 82(4):296-307.

Massee, K. C., J. Kim, B. A. Berejikian, R. W. Hardy. 2007. Prey selection and efficiency of naïve and experienced juvenile sockeye salmon (Oncorhynchus nerka). Journal of Fish Biology, 70:1213-1223.

McClure, M. M., M. H. Ruckelshaus. 2007. Collaborative science: moving ecosystem-based management forward in Puget Sound. Fisheries.

Miller, T. W., R. D. Brodeur. 2007. Diet of and tropic relationships among dominant marine nekton within the Northern California Current ecosystem. Fishery Bulletin, 105(4):548-559.

Sandahl, J. F., D. H. Baldwin, J. J. Jenkins, N. L. Scholz. 2007. A sensory system at the interface between urban stormwater runnoff and salmon survival. Environmental Science & Technology, 41(8):2998-3004.

Scheurer, J. A., B. A. Berejikian, F. P. Thrower, E. R. Ammann, T. A. Flagg. 2007. Innate predator recognition and fright response in related populations of Oncorhynchus mykiss under different predation pressure. Journal of Fish Biology, 70:1057-1069.

2006

Auth, T. D., R. D. Brodeur. 2006. Distribution and Community Structure of Ichthyoplankton off the coast of Oregon, USA, in 2000 and 2002. Marine Ecology Progress Series, 319:199-213.

Bartz, K. K., K. M. Lagueux, M. D. Scheuerell, T. J. Beechie, A. D. Haas, M. H. Ruckelshaus. 2006. Translating restoration scenarios into habitat conditions: an initial step in evaluating recovery strategies for Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 63:1578-1595.

Beechie, T. J., M. Liermann, M. M. Pollock, S. Baker, J. R. Davies. 2006. Channel pattern and river-floodplain dynamics in forested mountain river systems. Geomorphology, 78(1-2):124-141.

Beechie, T.J., M. Ruckelshaus, E. Buhle, A. Fullerton, L. Holsinger. 2006. Hydrologic regime and the conservation of salmon life history diversity. Biological Conservation 130(4):560-572.

Beechie, T. J., C. M. Greene, L. Holsinger, E. M. Beamer. 2006. Incorporating parameter uncertainties into evaluation of spawning habitat limitations on salmon populations. Canadian Journal of Fisheries and Aquatic Sciences, 63(6):1242-1250.

Campbell, B., J. Dickey, B. R. Beckman, G. Young, A. L. Pierce, H. Fukada, P. Swanson. 2006. Previtellogenic oocyte growth in salmon: relationships among body growth, plasma insulin-like growth factor-I, estradiol-17B, follicle-stimulating hormone and expression of ovarian genes for insulin-like growth factors, steroidogenic-acute regulatory protein and receptors for gonadotropins, growth hormone and somatolactin. Biology of Reproduction, 75:34-44.

Campbell, B., B. R. Beckman, W. T. Fairgrieve, P. Swanson. 2006. Reproductive investment and growth history in coho salmon. Transactions of the American Fisheries Society, 135:164-173.

Ford MJ, Fuss H, Boelts B, LaHood, E, Hard J, Miller J. 2006. Changes in run timing and natural smolt production in a naturally spawning coho salmon (Oncorhynchus kisutch) stream after 60 years of intensive hatchery supplementation. Canadian Journal of Fisheries and Aquatic Sciences 63:2343-2355.

Fullerton, A.H., T.J. Beechie, S.E. Baker, J.E. Hall, and K.A. Barnas. 2006.0Regional Patterns of Riparian Characteristics in the Interior Columbia River Basin, Northwestern USA: Applications for Restoration Planning. Landscape Ecology 21:1347-1360.

Hard, J. J., D. G. Elliott, R. J. Pascho, D. M. Chase, L. K. Park, J. R. Winton, D. E. Campton. 2006. Genetic effects of ELISA-based segregation for control of bacterial kidney disease in Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 63:2793-2808.

Hard, J. J., L. S. Mills, J. M. Peek. 2006. Genetic implications of reduced survival of male red deer (Cervus elaphus) under harvest. Wildlife Biology, 12(4):427-441.

Harvey, C. J., N. Tolimieri, P. S. Levin. 2006. Changes in body size, abundance, and energy allocation in rockfish assemblages of the northeast Pacific. Ecological Applications, 16:1502-1515.

Incardona, J., H. L. Day, T. K. Collier, N. L. Scholz. 2006. Developmental toxicity of 4-ring polycyclic aromatic hydrocarbons in zebrafish is differentially dependent on AH receptor isoforms and hepatic cytochrome P450 1A metabolism. Toxicology and Applied Pharmacology, 217:308-321.

Kemp, P. S., M. H. Gessel, B. P. Sandford, J. G. Williams. 2006. The behaviour of Pacific salmonid smolts during passage over two experimental weirs under light and dark conditions. River research and applications, 22:429-440.

Kusakabe, M., I. Nakamura, J. Evans, P. Swanson, G. Young. 2006. Changes in mRNAs encoding steroidogenic acute regulatory protein, steroidogenic enzymes and receptors for gonadotropins during spermatogenesis in rainbow trout testes. Journal of Endocrinology, 189:541-554.

Layton, D. F., S. T. Lee. 2006. Embracing Model Uncertainty: Strategies for Response Pooling and Model Averaging. Environmental and Resource Economics.

Linbo, T. L., C. M. Stehr, J. Incardona, N. L. Scholz. 2006. Dissolved copper triggers cell death in the peripheral mechanosensory system of larval fish. Environmental Toxicology and Chemistry, 25(2):597-603.

Mangel, M., P. S. Levin, A. Patil. 2006. Using life history and persistence criteria to prioritize habitats for management and conservation. Ecological Applications, 16:797-806.

Pierce, A. L., M. Shimizu, L. Felli, P. Swanson, W. W. Dickhoff. 2006. Metabolic hormones regulate insulin-like growth factor binding protein-1 mRNA levels in primary cultured salmon hepatocytes; lack of inhibition by insulin. Journal of Endocrinology, 191(2):379-386.

Piner, K., J. R. Wallace, O. S. Hamel, R. Mikus. 2006. Evaluation of ageing accuracy of bocaccio (Sebastes paucispinis) rockfish using bomb radiocarbon. Fisheries Research, 77(2):200-206.

Reese, D. C., R. D. Brodeur. 2006. Identifying and characterizing biological hotspots in the northern California Current. Deep Sea Research Part II: Topical Studies in Oceanography, 53:291-314.

Scholz, N. L., N. Truelove, J. S. Labenia, D. H. Baldwin, T. K. Collier. 2006. Does-additive addition of chinook salmon acetylcholinesterase activity by mixtures of organophosphate and carbamate insecticides. Environmental Toxicology and Chemistry, 25(5).

Scholz, N. L., W. A. Hopkins. 2006. The Ecotoxicology of Anticholinesterase Pesticides: Data Gaps and Research Challenges. Environmental Toxicology and Chemistry, 25:1185-1186.

Shearer, K. D., P. Parkins, B. A. Gadberry, B. R. Beckman, P. Swanson. 2006. Effects of growth rate/body size and a low lipid diet on the incidence of early sexual maturation in juvenile male spring chinook salmon (Oncorhynchus tshawytscha. Aquaculture, 252(2-4):545-556.

Stehr, C. M., T. L. Linbo, J. Incardona, N. L. Scholz. 2006. The developmental neurotoxicity of fipronil: notochord degeneration and locomotor defects in zebrafish embryos and larvae. Toxicological Sciences.

Tolimieri N, Levin PS (2006) Assemblage structure of eastern Pacific groundfishes on the U.S. continental slope in relation to physical and environmental variables. Transactions of the American Fisheries Society 135: 115-130.

Zabel, Richard, W., Scheuerell, Mark D., McClure, Michelle M. & Williams, John G.(2006) The Interplay between Climate Variability and Density Dependence in the Population Viability of Chinook Salmon. Conservation Biology 20 (1), 190-200. doi: 10.1111/ j.1523-1739.2005.00300.x

2005

Beechie, T. J., M. Liermann, E. M. Beamer, R. Henderson. 2005. A classification of habitat types in a large river and their use by juvenile salmonids. Transactions of the American Fisheries Society, 134:717-729.

Berejikian, B. A., E. P. Tezak. 2005. Male size effects on fertilization success: lack of evidence in chinook salmon spawning under experimental conditions. Environmental Biology of Fishes, 72:235-240.

Berejikian, B. A., E. P. Tezak. 2005. Rearing in enriched hatchery tanks improves dorsal fin quality of juvenile steelhead. North American Journal of Aquaculture, 67:289-293.

Berejikian, B. A., D. M. Van Doornik, A. LaRae, E. P. Tezak, J. Lee. 2005. The effects of exercise on behavior and reproductive success of captively reared steelhead. Transactions of the American Fisheries Society, 134:1236-1252.

Bilby, R. E., W. Ehinger, T. P. Quinn, G. Volkhardt, K. Krueger, D. E. Seiler, G. R. Pess, C. E. Jordan, D. Poon. 2005. Study evaluates fish response to management actions. Western Forester, 50(2):14-15.

Brodeur, R. D., M. P. Seki, E. A. Pakhomov, A. V. Suntsov. 2005. Micronekton - What are they and why are they importan? PICES Press, 13:7-11.

Brodeur, R. D., J. P. Fisher, R. L. Emmett, C. A. Morgan, E. Casillas. 2005. Species composition and community structure of pelagic nekton off Oregon and Washington under variable oceanographic conditions. Marine Ecology Progress Series.

Busby, M. S., K. Mier, R. D. Brodeur. 2005. Habitat associations of demersal fishes and crabs in the Pribilof Islands region of the Bering Sea. Fisheries Research, 75:15-28.

De Robertis, A., C. A. Morgan, R. Schabetsberger, R. W. Zabel, R. D. Brodeur, R. L. Emmett, C. M. Knight, G. K. Krutzikowsky, E. Casillas. 2005. Columbia River plume fronts. II Distribution, abundance and feeding ecology of juvenile salmon. Marine Ecology Progress Series, 299:33-44.

Emmett, R. L., R. D. Brodeur, T. W. Miller, S. S. Pool, P. J. Bentley, G. K. Krutzikowsky, J. McCrae. 2005. Pacific Sardine (Sardinops sagax) Abundance, Distribution and Ecological Relationships in the Pacific Northwest. California Cooperative Oceanic Fisheries Investigations Reports, 46:122-143.

Fukada, H., Y. Ozaki, A. L. Pierce, S. Adachi, K. Yamauchi, A. Hara, P. Swanson, W. W. Dickhoff. 2005. Identification of the salmon somatolactin receptor, a new member of the cytokine receptor family. Endocrinology, 146:2354-2361.

Hamel, O. S. 2005. Immunosuppression in progeny of chinook salmon infected with Renibacterium salmoninarum: re-analysis of a brood stock segregation experiment. Diseases of Aquatic Organisms, 65(1):29-41.

Incardona, J., M. G. Carls, H. Teraoka, C. A. Sloan, T. K. Collier, N. L. Scholz. 2005. Aryl hydrocarbon receptor-independant toxicity of weathered crude oil during fish development. Environmental Health Perspectives.

Jackson, L. F., S. D. McCormick, S. S. Madsen, P. Swanson, C. V. Sullivan. 2005. Osmoregulatory effects of hypophysectomy and homologous prolactin replacement in hybrid striped bass. Comparative Biochemistry and Physiology, Part B: Biochemistry and Molecular Biology, 140:211-218.

Kemp, P. S., M. H. Gessel, J. G. Williams. 2005. Fine-scale behavioral responses of Pacific salmonid smolts as they encounter divergence and acceleration of flow. Transactions of the American Fisheries Society, 134:390-398.

Kemp, P. S., M. H. Gessel, J. G. Williams. 2005. Seaward migrating subyearling chinook salmon avoid overhead cover. Journal of Fish Biology, 67:1381-1391.

Kuligowski, D. R., M. J. Ford, B. A. Berejikian. 2005. Breeding structure of steelhead inferred from patterns of genetic relatedness among nests. Transactions of the American Fisheries Society, 134:1202-1212.

Lefebvre, K. A., N. Elder, P. K. Hershberger, V. L. Trainer, C. M. Stehr, N. L. Scholz. 2005. Dissolved saxitoxin causes transient inhibition of sensorimotor function in larval Pacific herring (Clupea harengus pallasi). Marine Biology, 147:1393-1402.

Levin, P. S., G. W. Stunz. 2005. Habitat triage for exploited fishes: Can we identify essential "Essential Fish Habitat"? Estuarine, Coastal and Shelf Science, 64:70-78.

Mangel, M., P. S. Levin. 2005. Regime, phase and paradigm shifts: making community ecology the basic science for fisheries. Philosophical Transactions Royal Society of London, (360)95-105.

McClelland, E. K., J. M. Myers, J. J. Hard, L. K. Park, K. A. Naish. 2005. Two generations of outbreeding in coho salmon (Oncorhynchus kisutch): effects on size and growth. Canadian Journal of Fisheries and Aquatic Sciences, 62:2538-2547.

Piner, K., O. S. Hamel, J. L. Menkel, J. R. Wallace, C. E. Hutchinson. 2005. Age validation of canary rockfish (Sebastes pinniger) from off the Oregon coast (USA) using the bomb radiocarbon method. Canadian Journal of Fisheries and Aquatic Sciences, 62(5):1060-1066.

Reese, D. C., T. W. Miller, R. D. Brodeur. 2005. Community structure of near-surface zooplankton in the northern California Current in relation to oceanographic conditions. Deep Sea Research Part II: Topical Studies in Oceanography, 52:29-50.

Ressler, P. H., R. D. Brodeur, W. T. Peterson, S. K. Pierce, P. M. Vance, A. R. Rostad, J. A. Barth. 2005. The spatial distribution of euphausiid aggregations in the northern California Current during August 2000. Deep Sea Research Part II: Topical Studies in Oceanography, 52(1-2):89-108.

Sandahl, J. F., D. H. Baldwin, J. J. Jenkins, N. L. Scholz. 2005. Comparative thresholds for acetylcholinesterase inhibition and behavioral impairment in coho salmon exposed to chlorpyrifos. Environmental Toxicology and Chemistry, 24:136-145.

Scheuerell, M. D., P. S. Levin, R. W. Zabel, J. G. Williams, B. L. Sanderson. 2005. A new perspective on the importance of marine-derived nutrients to threatened stocks of Pacific salmon (Oncorhynchus sp.). Canadian Journal of Fisheries and Aquatic Sciences, 62(5):961-964.

Scheuerell, M. D., J. G. Williams. 2005. Forecasting climate-induced changes in the survival of Snake River spring/summer Chinook salmon. Fisheries Oceanography, 14(6):448-457.

Suchman, C. L., R. D. Brodeur. 2005. Abundance and distribution of large medusae in surface waters of the northern California Current. Deep Sea Research Part II: Topical Studies in Oceanography, 52:51-72.

Swartzman, G. L., A. G. Winter, K. O. Coyle, R. D. Brodeur, T. Buckley, L. Ciannelli, G. L. Hunt Jr., J. N. Ianelli, A. Macklin. 2005. Relationship of age-0 pollock abundance and distribution around the Pribilof Islands, to other shelf regions of the eastern Bering Sea. Fisheries Research, 74:273-287.

Tolimieri, N., P. S. Levin. 2005. The roles of fishing and climate in the population dynamics of bocaccio rockfish. Ecological Applications, (15)458-468.

Zabel, R. W., T. Wagner, J. L. Congleton, S. G. Smith, J. G. Williams. 2005. Survival and selection of migrating salmon from capture-recapture models with individual traits. Ecological Applications, 15:1427-1439.

2004

Ando, H., P. Swanson, T. Kitani, N. Koide, H. Okada, H. Ueda, A. Urano. 2004. Synergistic effects of salmon gonadotropin-releasing hormone and estradiol-17 beta on gonadotropin subunit gene expression and release in masu salmon pituitary cells in vitro. General and Comparative Endocrinology, 137:109-121.

Baker, D. M., B. Campbell, A. L. Pierce, W. W. Dickhoff, P. Swanson. 2004. Effects of fasting on the reproductive endocrine axis of Pacific salmon. General and Comparative Endocrinology.

Bosley, K. L., J. W. Lavelle, R. D. Brodeur, W. W. Wakefield, R. L. Emmett, E. T. Baker, K. M. Rehmke. 2004. Biological and Physical Processes in and around Astoria Submarine Canyon, Oregon, U.S.A. Journal of Marine Systems, 50:21-37.

Brodeur, R. D., J. P. Fisher, D. J. Teel, R. L. Emmett, E. Casillas, T. W. Miller. 2004. Juvenile salmonid distribution, growth, condition, origin, environmental and species associations in the Northern California Current. Fishery Bulletin, 102:25-46.

Ciannelli, L., B. W. Robson, R. C. Francis, K. Y. Aydin, R. D. Brodeur. 2004. Boundaries of open marine ecosystems: an application to the Pribilof Archipelego, southeast Bering Sea. Ecological Applications, 14:942-953.

Ciannelli, L., R. D. Brodeur, J. M. Napp. 2004. Foraging impact on zooplankton by age-0 walleye pollock (Theragra chalcogramma) around a front in the southeast Bering Sea. Marine Biology, 144:515-526.

Dower, J. F., R. D. Brodeur. 2004. The role of biophysical coupling in concentrating marine organisms around shallow topographies. Journal of Marine Systems, 50:1-2.

Emmett, R. L., R. D. Brodeur, P. M. Orton. 2004. The vertical distribution of juvenile salmon (Oncorhynchus spp.) and associated fishes in the Columbia River plume. Fisheries Oceanography, 13:392-402.

Fukada, H., Y. Ozaki, A. L. Pierce, S. Adachi, K. Yamauchi, A. Hara, P. Swanson, W. W. Dickhoff. 2004. Salmon growth hormone receptor: molecular cloning, protein expression, binding assay, and gene expression. General and Comparative Endocrinology, 139:61-71.

Granath, K. L., W. W. Smoker, A. J. Gharrett, J. J. Hard. 2004. Effects on embryo development time and survival of intercrossing three geographically separate populations of Southeast Alaska coho salmon, Oncorhynchus kisutch. Environmental Biology of Fishes, 69:299-306.

Greene, C. M., T. J. Beechie. 2004. Consequences of potential density-dependent mechanisms on recovery of ocean-type chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 61:590-602.

Hyatt, T. L., T. Z. Waldo, T. J. Beechie. 2004. A watershed scale assessment of riparian forests, with implications for restoration. Restoration Ecology, 12:175-183.

Incardona, J., T. K. Collier, N. L. Scholz. 2004. Defects in cardiac function precede morphological abnormalities in fish embryos exposed to polycyclic aromatic hydrocarbons. Toxicology and Applied Pharmacology, 196(2):191-205.

Kiffney, P. M., C. J. Volk, T. J. Beechie, G. L. Murray, G. R. Pess, R. E. Edmonds. 2004. A high-severity disturbance event alters community and ecosystem properties in West Twin Creek, Olympic National Park, Washington, USA. American Midland Naturalist, 152:268-303.

Larsen, D. A., M. Shimizu, K. A. Cooper, P. Swanson, W. W. Dickhoff. 2004. Androgen effects on plasma GH, IGF-I, and 41-kDa IGFBP in coho salmon (Oncorhynchus kisutch). General and Comparative Endocrinology, 139:29-37.

Larsen, D. A., B. R. Beckman, K. A. Cooper, D. Barrett, M. Johnston, P. Swanson, W. W. Dickhoff. 2004. Assessment of high rates of precocious male maturation in a spring chinook salmon supplementation hatchery program. Transactions of the American Fisheries Society, 133:98-120.

Lefebvre, K. A., V. L. Trainer, N. L. Scholz. 2004. Morphological abnormalities and sensorimotor deficits in larval fish exposed to dissolved saxitoxin. Aquatic Toxicology, 66(2):159-170.

Levin, P. S. 2004. Can we have our fish and eat them too? Review of A Perfect Ocean (Pauly, D and Maclean, J). American Scientist, 92:89-90.

Levin, P. S., B. F. Kochin. 2004. Publication of marine conservation papers: Is conservation biology too dry? Conservation Biology, 18:1160-1162.

Noren, D. P., M. Mangel. 2004. Energy reserve allocation in fasting Northern Elephant Seal pups: iner-relationships between body condition and fasting duration. Functional Ecology, 18:223-242.

Pierce, A. L., J. T. Dickey, D. A. Larsen, H. Fukada, P. Swanson, W. W. Dickhoff. 2004. A quantitative real-time RT-PCR assay for salmon IGF-I mRNA, and its application in the study of GH regulation of IGF-I gene expression in primary culture of salmon hepatocytes. General and Comparative Endocrinology, 135:401-411.

Pollock, M. M., G. R. Pess, T. J. Beechie, D. R. Montgomery. 2004. The importance of beaver ponds to coho salmon production in the Stillaguamish River basin, Washington, USA. North American Journal of Fisheries Management, 24:749-760.

Smoker, W. W., I. A. Wang, A. J. Gharrett, J. J. Hard. 2004. Embryo survival and smolt to adult survival in second-generation outbred coho salmon. Journal of Fish Biology, 65(Supplement A):254-262.

Thrower, F. P., J. J. Hard, J. E. Joyce. 2004. Genetic architecture of growth and early life history transitions in anadromous and derived freshwater populations of steelhead. Journal of Fish Biology, 65(Supplement A):286-307.

Tolimieri, N., P. S. Levin. 2004. Differences in responses of chinook salmon to climate shifts: implications for conservation. Environmental Biology of Fishes, 70:155-167.

2003

Achord, S., P. S. Levin, R. W. Zabel. 2003. Density-dependent mortality in Pacific salmon: the ghost of impacts past? Ecology Letters, 6:335-342.

Ando, H., P. Swanson, A. Urano. 2003. Regulation of LH synthesis and release by GnRH and gonadal steroids in masu salmon. Fish Physiology and Biochemistry, 28:61-63.

Baldwin, D. H., J. F. Sandahl, J. S. Labenia, N. L. Scholz. 2003. Sublethal effects of copper on coho salmon: impacts on nonoverlapping receptor pathways in the peripheral olfactory nervous system. Environmental Toxicology and Chemistry, 22(10):2266-2274.

Berejikian, B. A., W. T. Fairgrieve, P. Swanson, E. P. Tezak. 2003. Current velocity and injection of GnRHa affect reproductive behavior and body composition of captively reared offspring of wild chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 60:690-699.

Berejikian, B. A., E. P. Tezak, A. LaRae. 2003. Innate and enhanced predator recognition in hatchery-reared chinook salmon (Oncorhynchus tshawytscha). Environmental Biology of Fishes, 67:241-251.

Brodeur, R. D., W. G. Pearcy, S. Ralston. 2003. Abundance and distribution patterns of nekton and micronekton in the Northern California Current Transition Zone. Journal of Oceanography, 59:515-535.

Brodeur, R. D., J. P. Fisher, Y. Ueno, K. Nagasawa, W. G. Pearcy. 2003. An east-west comparison of the Transition Zone coastal pelagic nekton of the North Pacific Ocean. Journal of Oceanography, 59:415-434.

Brodeur, R. D., K. W. Myers, J. H. Helle. 2003. Research conducted by the United States on the early ocean life history of Pacific salmon. North Pacific Anadromous Fish Commission Bulletin, 3:89-131.

Campbell, B., J. T. Dickey, B. R. Beckman, G. Young, A. L. Pierce, P. Swanson. 2003. Endocrine changes associated with the growth of pre-vitellogenic oocytes in coho salmon, Oncorhynchus kisutch. Fish Physiology and Biochemistry, 28:287-289.

Campbell, B., J. T. Dickey, P. Swanson. 2003. Endocrine changes during onset of puberty in male spring chinook salmon, Oncorhynchus tshawytscha. Biology of Reproduction, 69:2109-2117.

De Robertis, A. C., C. H. Ryer, A. Veloza, R. D. Brodeur. 2003. Differential effects of turbidity on prey consumption of piscivorous and planktivorous fish. Canadian Journal of Fisheries and Aquatic Sciences, 60:1517-1526.

Fukada, H., J. T. Dickey, A. L. Pierce, N. Hodges, A. Hara, P. Swanson, W. W. Dickhoff. 2003. Gene expression levels of growth hormone receptor and insulin-like growth factor-I in gonads of maturing coho salmon (Oncorhynchus kisutch)., 28:335-336.

Gomez-Gutierrez, J., W. T. Peterson, A. C. De Robertis, R. D. Brodeur. 2003. Mass mortality of krill caused by parasitoid ciliates. Science, 301(5631):339.

Levin, P. S. 2003. Regional differences in responses of Pacific Salmon to large-scale climate patterns. Journal of Biogeography, 30:711-717.

Levin, P. S., M. E. Hay. 2003. Selection of estuarine habitats by juvenile gags in experimental mesocosms. Transactions of the American Fisheries Society, 132:76-83.

McClure, M. M., E. E. Holmes, B. L. Sanderson, C. E. Jordan. 2003. A large-scale, multispecies status assessment: anadromous salmonids in the Columbia River Basin. Ecological Applications, 13:964-989. (Pre-Press Word | PDF)

McClure, M. M., A. R. McCune. 2003. Evidence for developmental linkage of pigment patterns with body size and shape in Danios (Teleostei: Cyprinidae). Evolution, 57:1863-1875.

Noren, D. P., D. E. Crocker, T. M. Williams, D. P. Costa. 2003. Energy reserve utilization in northern elephant seal (Mirounga angustirostris) pups during the postweaning fast: size does matter. Journal of Comparative Physiology, B, 173:443-454.

Salinger, D. H., J. J. Anderson, O. S. Hamel. 2003. A parameter estimation routine for the vitality-based survival model. Ecological Modelling, 166:287-294.

Schabetsberger, R., C. A. Morgan, R. D. Brodeur, C. L. Potts, W. T. Peterson, R. L. Emmett. 2003. Prey selectivity and diel feeding chronology of juvenile chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume. Fisheries Oceanography, 12:523-540.

Schabetsberger, R., M. Sztatecsny, G. Drozdowski, R. D. Brodeur, G. L. Swartzman, M. T. Wilson, A. G. Winter, J. M. Napp. 2003. Size-dependent, spatial, and temporal variability of juvenile walleye pollock (Theragra chalcogramma) feeding at a structural front in the southeast Bering Sea. Marine Ecology, 24:141-164.

Shimizu, M., P. Swanson, A. Hara, W. W. Dickhoff. 2003. Purification of a 41-kDa insulin-like growth factor binding protein from serum of chinook salmon, Oncorhynchus tshawytscha. General and Comparative Endocrinology, 132:103-111.

Steel, E. A., L. Johnston, B. E. Feist, G. R. Pess, R. E. Bilby, D. Jensen, T. J. Beechie, J. M. Myers. 2003. Pacific salmon recovery planning and the Salmonid Watershed Analysis Model (SWAM): a broad-scale tool for assisting in the development of habitat recovery plans. Endangered Species Update, 20(1):3-15.

Swanson, P., J. T. Dickey, B. Campbell. 2003. Biochemistry and physiology of fish gonadotropins. Fish Physiology and Biochemistry, 28:53-59.

Waknitz, F. W., R. N. Iwamoto, M. S. Strom. 2003. Interactions of Atlantic salmon in the Pacific Northwest: IV. Impacts on the local ecosystems. Fisheries Research, 62:307-328.

Weltzien, F. A., B. Norberg, P. Swanson, J. V. Helvik, O. K. Andersen, E. Andersen. 2003. Identification and localization of eight distinct hormone-producing cell types in the pituitary of male Atlantic halibut (Hippoglossus hippoglossus L.). Comparative Biochemistry and Physiology, 134:315-327.

Weltzien, F. A., B. Norberg, P. Swanson. 2003. Isolation and characterization of FSH and LH from pituitary glands of Atlantic halibut (Hippoglossus hippoglossus L.). General and Comparative Endocrinology, 131:97-105.

Zabel, R. W., C. J. Harvey, S. L. Katz, T. P. Good, P. S. Levin. 2003. Ecologically Sustainable Yield. American Scientist, 91:150-157.

2002

Batchelder, H. P., J. A. Barth, M. P. Kosro, P. T. Strub, R. D. Brodeur, W. T. Peterson, C. T. Tynan, M. D. Ohman, L. W. Botsford, T. M. Powell, F. B. Schwing, D. G. Ainley, D. L. Mackas, B. M. Hickey, S. R. Ramp. 2002. The GLOBEC Northeast Pacific California Current System program. Oceanography, 15(2):36-47.

Brodeur, R. D., H. Sugisaki, G. L. Hunt Jr. 2002. Increases in jellyfish biomass in the Bering Sea: Implications for the ecosystem. Marine Ecology Progress Series, 233:89-103.

Brodeur, R. D., M. T. Wilson, L. Ciannelli, M. J. Doyle, J. M. Napp. 2002. Interannual and regional variability in distribution and ecology of juvenile Pollock and their prey in frontal structures of the Bering Sea. Deep Sea Research Part II: Topical Studies in Oceanography, 49:6051-6067.

Ciannelli, L., R. D. Brodeur, G. L. Swartzman, S. Salo. 2002. Physical and biological factors influencing the spatial distribution of age-0 walleye Pollock (Theragra chalcogramma) around the Pribilof Islands, Bering Sea. Deep Sea Research Part II: Topical Studies in Oceanography, 49:6109-6126.

Ciannelli, L., A. J. Paul, R. D. Brodeur. 2002. Regional, interannual and size-related variation of age 0 year walleye pollock whole body energy content around the Pribilof Islands, Bering Sea. Journal of Fish Biology, 60:1170-1182.

Doyle, M. J., K. Mier, M. S. Busby, R. D. Brodeur. 2002. Regional variations in springtime ichthyoplankton assemblages in the Northeast Pacific Ocean. Progress in Oceanography, 53:247-281.

Hamel, O. S. 2002. Saving salmon: Why care? Science World, 58(13).

Hunt, G. L. Jr., P. J. Stabeno, G. Walters, E. Sinclair, R. D. Brodeur, J. M. Napp, N. A. Bond. 2002. Climate change and control of the southeastern Bering Sea pelagic ecosystem. Deep Sea Research Part II: Topical Studies in Oceanography, 49:5821-5853.

Levin, P. S., J. A. Coyer, R. Petrik, T. P. Good. 2002. Community-wide effects of non-indigenous species on temperate reefs. Ecology, 83:3182-3193.

Levin, P. S., M. E. Hay. 2002. Fish-seaweed association on temperate reefs: do small-scale experiments predict large-scale patterns. Marine Ecology Progress Series, 232:239-246.

Levin, P. S., J. Ellis, R. Petrik, M. E. Hay. 2002. Indirect effects of feral horses on estuarine communities. Conservation Biology, 16:1364-1371.

Levin, P. S., J. G. Williams. 2002. Interspecific effects of artificially propagated fish: an additional conservation risk for salmon. Conservation Biology, 16:1581-1587.

Levin, P. S., S. Achord, B. E. Feist, R. W. Zabel. 2002. Non-indigenous brook trout and the demise of threatened Snake River salmon: a forgotten threat? Proceedings of the Royal Society of London. Series B, 269:1663-1670.

Levin, P. S., D. A. Levin. 2002. The real biodiversity crisis. American Scientist, 90:6-8.

Napp, J. M., C. T. Baier, R. D. Brodeur, K. O. Coyle, N. Shiga, K. Mier. 2002. Interannual and decadal variability in zooplankton communities of the southeast Bering Sea shelf. Deep Sea Research Part II: Topical Studies in Oceanography, 49:5991-6008.

Roni, P., T. J. Beechie, R. E. Bilby, F. E. Leonetti, M. M. Pollock, G. R. Pess. 2002. A review of stream restoration techniques and a hierarchical strategy for prioritizing restoration in Pacific Northwest watersheds. North American Journal of Fisheries Management, 22(1):1-20.

Ruckelshaus, M. H., P. S. Levin, J. B. Johnson, P. Kareiva. 2002. The Pacific salmon wars: what science brings to the challenge of recovering species. Annual Review of Ecology and Systematics, 33:665-706.

Smith, S. G., W. D. Muir, J. G. Williams, J. R. Skalski. 2002. Factors associated with travel time and survival of migrant yearling chinook salmon and steelhead in the lower Snake River. North American Journal of Fisheries Management, 22:385-405.

Stunz, G. W., T. J. Minello, P. S. Levin. 2002. A comparison of early juvenile red drum densities among various habitat types in Galveston Bay, Texas. Estuaries, 25:76-85.

Stunz, G. W., T. J. Minello, P. S. Levin. 2002. Growth of newly settled red drum Sciaenops ocellatus in different estuarine habitat types. Marine Ecology Progress Series, 238:227-236.

Swartzman, G. L., J. M. Napp, R. D. Brodeur, A. G. Winter, L. Ciannelli. 2002. Spatial patterns of pollock and zooplankton distribution in the Pribilof Islands, Alaska nursery area and their relationship to pollock recruitment. ICES Journal of Marine Science, 59:1167-1186.

Wang, S. Z., J. J. Hard, F. Utter. 2002. Genetic variation and fitness in salmonids. Conservation Genetics, 3:321-333.

Weingartner, T. J., K. O. Coyle, B. Finney, R. Hopcroft, T. Whitledge, R. D. Brodeur, M. Dagg, E. Farley, D. Haidvogel, L. Haldorson, A. Herman, S. Hinckley, J. M. Napp, P. J. Stabeno, T. Kline, C. Lee, E. Lessard, T. Royer, S. Strom. 2002. The Northeast Pacific GLOBEC Program: Coastal Gulf of Alaska. Oceanography, 15:48-63.

Welty, J. J., T. J. Beechie, K. Sullivan, D. M. Hyink, R. E. Bilby, C. Andrus, G. R. Pess. 2002. Riparian Aquatic Interaction Simulator (RAIS): a model of riparian forest dynamics for the generation of large woody debris and shade. Forest Ecology and Management, 162:299-318.

Zabel, R. W., J. G. Williams. 2002. Selective mortality in chinook salmon: what is the role of human disturbance? Ecological Applications, 12:173-183.

Zabel, R. W., P. S. Levin. 2002. Simple assumptions on age composition lead to erroneous conclusions on the nature of density dependence in age-structured populations. Oecologia, 133:349-355.

2001

Bauchat, J. R., W. H. Busby, A. Garmong, P. Swanson, J. D. Moore, M. Lin, C. M. Duan. 2001. Biochemical and Functional Analysis of a Conserved Igf-Binding Protein Isolated From Rainbow Trout (Oncorhynchus Mykiss) Hepatoma Cells. Journal of Endocrinology, 170:619-628.

Beechie, T. J. 2001. Empirical predictors of annual bed load travel distance, and implications for salmonid habitat restoration and protection. Earth Surface Processes and Landforms, 26:1025-1034.

Berejikian, B. A., E. P. Tezak, S. Riley, A. LaRae. 2001. Competitive ability and social behavior of juvenile steelhead (Oncorhynchus mykiss) reared in enriched and conventional hatchery tanks and a stream environment. Journal of Fish Biology, 59:1600-1613.

Berejikian, B. A., E. P. Tezak, L. K. Park, E. LaHood, S. L. Schroder, E. Beall. 2001. Male competition and breeding success in captively reared and wild coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences, 58:804-810.

Berejikian, B. A., E. P. Tezak, L. K. Park, S. L. Schroder, E. Beall, E. LaHood. 2001. Male dominance and spawning behavior of captively reared and wild coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences, 58:804-810.

Berejikian, B. A. 2001. Release of captively-reared adult salmon for use in recovery. World Aquaculture, 32:63-65.

Berejikian, B. A., E. P. Tezak, S. L. Schroder. 2001. Reproductive behavior and breeding success of captively reared Chinook salmon. North American Journal of Fisheries Management, 21:255-260.

Berejikian, B. A., E. P. Tezak, S. Riley, A. LaRae. 2001. Social behavior and competitive ability of juvenile steelhead (Oncorhynchus mykiss) reared in enriched and conventional hatchery tanks and a stream environment. Journal of Fish Biology, 59:1600-1613.

Brodeur, R. D. 2001. Habitat-specific distribution of Pacific Ocean perch (Sebastes alutus) in Pribilof Canyon, Alaska. Continental Shelf Research, 21:207-224.

Kareiva, P., M. Marvier, M. M. McClure. 2001. Dam breaching and chinook salmon recovery: Response. Science, 291:939a.

Levin, P. S., N. Tolimieri. 2001. Differences in the impacts of dams on the dynamics of salmon populations. Animal Conservation, 4(4):291-299.

Levin, P. S., M. H. Schiewe. 2001. Preserving salmon biodiversity. American Scientist, 89:220-227.

Levin, P. S., R. W. Zabel, J. G. Williams. 2001. The road to extinction is paved with good intentions: negative effects of fish hatcheries on threatened salmon. Proceedings of the Royal Society of London. Series B, 268:1153-1158.

McClure, M. M., T. Cooney, M. Marvier. 2001. Assessing the role of dams in salmon recovery. Hydro-Review, 20:36?45.

Muir, W. D., S. G. Smith, J. G. Williams, E. E. Hockersmith, J. R. Skalski. 2001. Survival estimates for PIT-tagged migrant yearling chinook salmon and steelhead in the Lower Snake and Lower Columbia Rivers, 1993-1998. North American Journal of Fisheries Management, 21:269-282.

Muir, W. D., S. G. Smith, J. G. Williams, E. E. Hockersmith, J. R. Skalski. 2001. Survival estimates for migrant yearling chinook salmon and steelhead tagged with passive integrated transponders in the lower Snake and lower Columbia Rivers, 1993-1998. North American Journal of Fisheries Management, 21:269-282.

Muir, W. D., S. G. Smith, J. G. Williams, B. P. Sandford. 2001. Survival of PIT-tagged juvenile salmonids passing through bypass systems, turbines, and spillways with and without flow deflectors at Snake River dams. North American Journal of Fisheries Management, 21(1):135-146.

Myers, J. M., W. K. Hershberger, A. M. Saxton, R. N. Iwamoto. 2001. Estimates of genetic and phenotypic parameters for length and weight of marine net-pen reared coho salmon (Onchorhynchus kisutch Walbaum). Aquaculture Research, 32:277-285.

Myers, J. M., P. O. Heggelund, G. Hudson, R. N. Iwamoto. 2001. Genetics and broodstock management of coho salmon. Aquaculture, 197:43-62.

Stockwell, D. A., T. Whitledge, S. I. Zeeman, K. O. Coyle, J. M. Napp, R. D. Brodeur, A. I. Pinchuk, G. L. Hunt Jr. 2001. Anomalous conditions in the south-eastern Bering Sea, 1997: Nutrients, phytoplankton, and zooplankton. Fisheries Oceanography, 10:99-116.

Stunz, G. W., P. S. Levin, T. J. Minello. 2001. Selection of estuarine nursery habitats by wild-caught and hatchery-reared juvenile red drum in laboratory mesocosms. Environmental Biology of Fishes, 61:305-313.

Sugisaki, H., K. M. Bailey, R. D. Brodeur. 2001. Development of predator evasion response behavior by larval walleye pollock, Theragra chalcogramma. Marine Biology, 139:19-24.

Sugisaki, H., K. M. Bailey, R. D. Brodeur. 2001. Development of the escape response in larval walleye pollock (Theragra chalcogramma). Marine Biology, 139:19-24.

Swanson, P., W. W. Dickhoff. (Guest Eds.) 2001. Proceedings of the 4th International Symposium on Fish Endocrinology. Comparative Biochemistry and Physiology, 129B:1-701.

Wang, S. Z., J. J. Hard, F. Utter. 2001. Salmonid inbreeding: a review. Reviews in Fish Biology and Fisheries, 11:301-319.

Waples, R. S., R. G. Gustafson, L. A. Weitkamp, J. M. Myers, O. W. Johnson, P. J. Busby, J. J. Hard, G. J. Bryant, F. W. Waknitz, K. Neely, D. J. Teel, W. S. Grant, G. A. Winans, S. Phelps, A. R. Marshall, B. M. Baker. 2001. Characterizing Diversity in Salmon From the Pacific Northwest. Journal of Fish Biology, 59(Suppl. A):1-41.

Williams, J. G. 2001. Potential impacts of Renibacterium salmoninarum on adult returns of Snake River spring-summer chinook salmon. Bulletin of National Research Institute of Aquaculture, Supplement, 5:55-59.

Williams, J. G., S. G. Smith, W. D. Muir. 2001. Survival estimates for downstream migrant yearling juvenile salmonids through the Snake and Columbia River Hydropower System, 1966-1980 and 1993-1999. North American Journal of Fisheries Management, 21:310-317.

2000

Baker, D. M., B. Davies, W. W. Dickhoff, P. Swanson. 2000. Insulin-like growth factor I increases follicle-stimulating hormone (FSH) content and gonadotropin-releasing hormone-stimulated FSH release from coho salmon pituitary cells in vitro. Biology of Reproduction, 63(3):865-871.

Baker, D. M., D. A. Larsen, P. Swanson, W. W. Dickhoff. 2000. Long term peripheral treatment of coho salmon (Onchorhynchus kisutch) with human recombinant leptin has no clear physiologic effect. General and Comparative Endocrinology, 118:134-138.

Baker, D. M., D. A. Larsen, P. Swanson, W. W. Dickhoff. 2000. Long-term peripheral treatment of immature coho salmon (Oncorhynchus kisutch) with human leptin has no clear physiologic effect. General and Comparative Endocrinology, 118:134-138.

Baro, D. J., A. Ayali, L. French, N. L. Scholz, J. S. Labenia, C. C. Lanning, K. Graubard, R. M. Harris-Warrick. 2000. Molecular underpinnings of motor pattern generation: Differential targeting of shal and shaker in the pyloric motor system. Journal of Neuroscience, 20:6619-6630.

Beechie, T. J., G. R. Pess, P. Kennard, R. E. Bilby, S. Bolton. 2000. Modeling recovery rates and pathways for woody debris recruitment in northwestern Washington streams. North American Journal of Fisheries Management, 20:436-452.

Berejikian, B. A., E. P. Tezak, A. LaRae. 2000. Female mate choice and spawning behavior of chinook salmon (Oncorhynchus tshawytscha) under experimental conditions. Journal of Fish Biology, 57:647-661.

Berejikian, B. A., E. P. Tezak, T. A. Flagg, A. LaRae, E. Kummerow, C. V. Mahnken. 2000. Social dominance, growth and habitat use of age-0 steelhead grown in enriched and conventional hatchery rearing environments. Canadian Journal of Fisheries and Aquatic Sciences, 57:628-636.

Brodeur, R. D., G. W. Boehlert, E. Casillas, M. B. Eldridge, J. H. Helle, W. T. Peterson, W. R. Heard, S. Lindley, M. H. Schiewe. 2000. A coordinated research plan for estuarine and ocean research on Pacific salmon. Fisheries, 25(6):7-16.

Devlin, R. H., P. Swanson, W. C. Clarke, E. M. Plisetskaya, W. W. Dickhoff, S. Moriyama, T. Y. Yesaki, C. L. Hew. 2000. Seawater adaptability and hormone levels in growth-enhanced transgenic coho salmon, Oncorhynchus kisutch. Aquaculture, 191:367-385.

Dickey, J. T., P. Swanson. 2000. Effects of salmon gonadotropin-releasing hormone (sGnRH) on follicle stimulating hormone (FSH) secretion and subunit gene expression in coho salmon (Oncorhynchus kisutch). General and Comparative Endocrinology, 118:436-449.

Emmett, R. L., R. D. Brodeur. 2000. Recent changes in the pelagic nekton community off Oregon and Washington in relation to some physical oceanographic conditions. North Pacific Anadromous Fish Commission Bulletin, 2:11-20.

Hard, J. J., B. A. Berejikian, E. P. Tezak, S. L. Schroder, C. M. Knudsen, L. T. Parker. 2000. Evidence for morphometric differentiation of wild and captively reared adult coho salmon (Oncorhynchus kisutch Walbaum): a geometric analysis. Environmental Biology of Fishes, 58:61-73.

Hard, J. J., L. Connell, W. K. Hershberger, L. W. Harrell. 2000. Genetic variation in mortality of chinook salmon (Oncorhynchus tshawytscha) during a bloom of the marine alga Heterosigma akashiwo. Journal of Fish Biology, 56:1387-1397.

Jackson, L. F., P. Swanson, C. M. Duan, S. Fruchtman, C. V. Sullivan. 2000. Purification, characterization, and bioassay of prolactin and growth hormone from temperate basses, genus Morone. General and Comparative Endocrinology, 117:138-150.

Kareiva, P., P. S. Levin, M. M. McClure. 2000. Letter: Many plans, one bottom line: save endangered salmon. Science, 289:2281-2282.

Kareiva, P., M. Marvier, M. M. McClure. 2000. Recovery and management options for spring/summer chinook salmon in the Columbia River Basin. Science, 290:977-979.

Kumar, R. S., S. Ijiri, K. Kight, P. Swanson, A. Dittman, D. Alok, Y. Zohar, J. M. Trant. 2000. Cloning and functional expression of a thyrotropin receptor from the gonads of a vertebrate (bony fish): potential thyroid-independent role for thyrotropin in reproduction. Molecular and Cellular Endocrinology, 167:1-9.

Levin, P. S., N. Tolimieri, M. Nicklin, P. F. Sale. 2000. Integrating individual behavior and population ecology: the potential for habitat-dependent population regulation in a reef fish. Behavioral Ecology, 11:565-571.

Myers, J. M., R. N. Iwamoto, D. J. Teel, D. M. Van Doornik, W. K. Hershberger. 2000. Coho salmon broodstock development---1977 to 1998. Ten generations of systematic selective breeding. Bulletin of National Research Institute of Aquaculture, Supplement, 1:63-70.

Nash, C. E., R. N. Iwamoto, C. V. Mahnken. 2000. Aquaculture risk management and marine mammal interactions in the Pacific Northwest. Aquaculture, 183:307-323.

Planas, J., J. Athos, R. Goetz, P. Swanson. 2000. Regulation of ovarian steroidogenesis in vitro by gonadtropins during sexual maturation in coho salmon (Oncorhynchus kisutch). Biology of Reproduction, 62:1262-1269.

Scholz, N. L., N. Truelove, B. L. French, B. A. Berejikian, T. P. Quinn, E. Casillas, T. K. Collier. 2000. Diazinon disrupts antipredator and homing behaviors in chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 57:1911-1918.

Scholz, N. L., T. K. Collier. 2000. Endangered salmon and probabilistic risk assessments for organophosphate pesticides. SETAC Globe, 1:32-33.

Shearer, K. D., P. Swanson. 2000. The effect of whole body lipid on early sexual maturation of one-plus age male chinook salmon. Aquaculture, 190:343-367.

Shimizu, M., P. Swanson, H. Fukada, A. Hara, W. W. Dickhoff. 2000. Comparison of extraction methods and assay validation for salmon insulin-like factor I using commercially available components. General and Comparative Endocrinology, 119:26-36.

Zabel, R. W., J. G. Williams. 2000. Comments on "Contrasting patterns of productivity and survival rates for stream-type chinook salmon (Oncorhynchus tshawytscha) populations of the Snake and Columbia rivers" by Schaller et al. (1999). Canadian Journal of Fisheries and Aquatic Sciences, 57:1739-1741.

1999

Antonopoulou, E., I. Mayer, B. Borg, P. Swanson, I. Murza, O. Christoforov. 1999. Effects of testosterone on gonadotropins, testes, and plasma 17alpha, 20beta-dihydroxy-4-pregnen-3-one levels in postbreeding mature Atlantic salmon, Salmo salar, male parr. Journal of Experimental Zoology, 284:425-436.

Antonopoulou, E., P. Swanson, I. Mayer, B. Borg. 1999. Feedback control of gonadotropins in Atlantic salmon, Salmo salar, male parr. II. Aromatase inhibitor and androgen effects. General and Comparative Endocrinology, 114:142-150.

Antonopoulou, E., C. Bornestaf, P. Swanson, B. Borg. 1999. Feedback control of gonadotropins in Atlantic salmon, Salmo salar, male parr. I. Castration effects in rematuring and nonrematuring fish. General and Comparative Endocrinology, 114:132-141.

Berejikian, B. A., R. J. Smith, E. P. Tezak, S. L. Schroder, C. M. Knudsen. 1999. Chemical alarm signals and complex hatchery rearing habitats affect anti-predator behavior and survival of chinook salmon (Oncorhynchus tshawytscha) juveniles. Canadian Journal of Fisheries and Aquatic Sciences, 56:830-838.

Berejikian, B. A., E. P. Tezak, S. L. Schroder, T. A. Flagg, C. M. Knudsen. 1999. Competitive differences between newly emerged offspring of captively reared and wild coho salmon (Oncorhynchus kisutch). Transactions of the American Fisheries Society, 128:832-839.

Davies, B., N. Bromage, P. Swanson. 1999. The brain-pituitary-gonadal axis of female rainbow trout (Oncorhynchus mykiss): effects of photoperiod manipulation. General and Comparative Endocrinology, 115:155-166.

Hard, J. J., W. R. Heard. 1999. Analysis of straying variation in Atlantic hatchery chinook salmon (Oncorhynchus tshawytscha) following transplantation. Canadian Journal of Fisheries and Aquatic Sciences, 56:578-589.

Hard, J. J., G. A. Winans, J. C. Richardson. 1999. Phenotypic and genetic architecture of juvenile morphometry in chinook salmon. Journal of Heredity, 90(6):597-606.

Shimizu, M., P. Swanson, W. W. Dickhoff. 1999. Free and protein-bound insulin-like growth factor-I (IGF-I), and IGF-binding proteins in plasma of coho salmon, Oncorhynchus kisutch. General and Comparative Endocrinology, 115:398-405.

1998

Baker, D. B., W. W. Dickhoff, P. Swanson. 1998. Effect of metabolic hormones on the reproductive axis in coho salmon, Oncorhynchus kisutch. American Zoologist, 38:21A.

Borg, B., E. Antonopoulou, I. Mayer, E. Andersson, I. Berglund, P. Swanson. 1998. Effects of gonadectomy and androgen treatments on pituitary and plasma levels of gonadotropins in mature male Atlantic salmon, Salmo salar, parr-positive feedback control of both gonadotropins. Biology of Reproduction, 58:814-820.

Dickey, J. T., P. Swanson. 1998. Effects of sex steroids on gonadotropin (FSH and LH) regulation in coho salmon (Oncorhynchus kisutch). Journal of Molecular Endocrinology, 21:291-306.

Larsen, D. A., P. Swanson, J. T. Dickey, J. Rivier, W. W. Dickhoff. 1998. In vitro thyrotropin-releasing activity of corticotrophin-releasing hormone-family peptides in coho salmon, Oncorhynchus kisutch. General and Comparative Endocrinology, 109:276-285.

Pierce, A. L., B. R. Beckman, D. L. Larsen, P. Swanson, K. D. Shearer, W. W. Dickhoff. 1998. Effects of ration and serial sampling on the somatoropic axis in coho salmon, Oncorhynchus kisutch. American Zoologist, 38:109A.

Skalski, J. R., S. G. Smith, R. N. Iwamoto, J. G. Williams, A. Hoffman. 1998. Use of passive integrated transponder tags to estimate survival of migrant juvenile salmonids in the Snake and Columbia rivers. Canadian Journal of Fisheries and Aquatic Sciences, 55(6):1484-1493.

1997

Antonopoulou, E., S. Jakobsson, I. Mayer, P. Swanson, B. Borg. 1997. In vivo and in vitro effects of 17 alpha, 20 beta-dihydroxy-4- pregnene-S-one on testicular androgens in Atlantic salmon, Salmo salar, mature parr. Journal of Experimental Zoology, 277:66-71.

Berejikian, B. A., E. P. Tezak, S. L. Schroder, C. M. Knudsen, J. J. Hard. 1997. Reproductive behavioral interactions between wild and captively reared coho salmon (Oncorhynchus kisutch). ICES Journal of Marine Science, 54:1040-1050.

Bradshaw, W. E., C. M. Holzapfel, C. A. Kleckner, J. J. Hard. 1997. Heritability of development time and protandry in the pitcher-plant mosquito, Wyeomyia smithii. Ecology, 78:969-976.

Iwamoto, R. N. 1997. Pacific salmon and their environment--an integrative approach. Environmental Biology of Fishes, 50:349-352.

Johnson, L. L., B. Norberg, M. L. Willis, H. Zebroski, P. Swanson. 1997. Isolation, characterization and radioimmunoassay of Atlantic halibut somatolactin and plasma levels during stress and reproduction in flatfish. General and Comparative Endocrinology, 105:194-209.

Johnson, L. L., B. Norberg, M. L. Willis, H. Zebrowski, P. Swanson. 1997. Isolation, characterization, and measurement of plasma levels of somatolactin in Atlantic halibut (Hippoglossus hippoglossus). General and Comparative Endocrinology, 105:194-209.

Larsen, D. A., P. Swanson. 1997. Effects of gonadectomy on plasma gonadotropins I and II in coho salmon, Oncorhynchus kisutch. General and Comparative Endocrinology, 108:152-160.

Maestro, M. A., J. Planas, S. Moriyama, J. Guttierez, P. Swanson. 1997. Ovarian receptors for insulin and insulin-like growth factor I (IGF-I) and effects of IGF-I on steroid production by isolated follicular layers of the preovulatory coho salmon ovarian follicle. General and Comparative Endocrinology, 106:189-201.

Mananos, E. L., P. Swanson, S. Stubblefield, Y. Zohar. 1997. Purification of gonadotropin II from a teleost fish, the hybrid striped bass, and development of a specific enzyme-linked immunosorbent assay. General and Comparative Endocrinology, 108:209-222.

Moriyama, S., P. Swanson, D. A. Larsen, S. Miwa, H. Kawauchi, W. W. Dickhoff. 1997. Isolation, characterization, and radioimmunoassay of thyroid stimulating hormone in coho salmon (Oncorhynchus kisutch). General and Comparative Endocrinology, 108:457-471.

Moriyama, S., P. Swanson, D. A. Larsen, S. Miwa, H. Kawauchi, W. W. Dickhoff. 1997. Salmon thyroid-stimulating hormone: Isolation, characterization, and development of a radioimmunoassay. General and Comparative Endocrinology, 108:457-471.

Parker, D. B., M. E. Power, P. Swanson, J. Rivier, N. M. Sherwood. 1997. Exon skipping in the gene encoding pituitary adenylate cyclase- activating polypeptide in salmon alters the expression of two hormones that stimulate growth hormone release. Endocrinology, 138:414-423.

Planas, J., F. W. Goetz, P. Swanson. 1997. Stimulation of brook trout ovarian steroidogenesis by gonadotropins I and II is mediated by the cyclic adenosine 3',5'-monophosphate protein kinase A pathway. Biology of Reproduction, 57:647-654.

Schiewe, M. H., T. A. Flagg, B. A. Berejikian. 1997. The use of captive broodstocks for gene conservation of salmon in the Western United States. Bull. Nat. Res. Inst. Aquacult. Suppl, Suppl. 3:29-34.

Schulz, R. W., F. van der Wind, C. Janssen-Dommerholt, J. Peute, C. C. Mylonas, Y. Zohar, P. Swanson, H. J. Goos. 1997. Modulation of testicular androgen production in adolescent African catfish (Clarias gariepinus). General and Comparative Endocrinology, 108:56-66.

1996

Berejikian, B. A., S. B. Mathews, T. P. Quinn. 1996. Effects of hatchery and wild ancestry and rearing environments on the development of agonistic behavior in steelhead trout fry (Oncorhynchus mykiss) fry. Canadian Journal of Fisheries and Aquatic Sciences, 53:2004-2014.

1995

Hard, J. J. 1995. A quantitative genetic perspective on the conservation of intraspecific diversity. American Fisheries Society Symposium, 17:304-326.

Hard, J. J. 1995. Genetic monitoring of life-history characters in salmon supplementation: problems and opportunities. American Fisheries Society Symposium, 15:212-225.

Hard, J. J. 1995. Science, education, and the fisheries scientist. Fisheries, 20(3):10-16.

Lu, M. Q., P. Swanson, J. L. Renfro. 1995. Effect of Somatolactin and Related Hormones on Phosphate Transport by Flounder Renal Tubule Primary Cultures. American Journal of Physiology: Regulatory, Integrative and Comparative Physiology, 37:R577-R582.

Maestro, M. A., J. Planas, J. Gutierrez, S. Moriyama, P. Swanson. 1995. Effects of Insulin-Like Growth-Factor-I (Igf-I) on Steroid- Production by Isolated Ovarian Theca and Granulosa Layers of Preovulatory Coho Salmon. Netherlands Journal of Zoology, 45:143-146.

Manzella, S. M., S. M. Dharmesh, M. C. Beranek, P. Swanson, J. Baenziger. 1995. Evolutionary conservation of sulfated oligosaccharides on vertebrate glycoprotein hormones that control circulatory half-life. Journal of Biological Chemistry, 270:21665-21671.

Planas, J., P. Swanson. 1995. Maturation-associated changes in the response of the salmon testis to the steroidogenic actions of gonadotropins (GTH I and GTH II). Biology of Reproduction, 52:697-704.

Renfro, J. L., M. Q. Lu, P. Swanson. 1995. Somatolactin (Ssl) Stimulation of Phosphate (P-I) Reabsorption by Flounder Renal Tubule Primary Cultures (Ptcs). FASEB Journal, 9:A354.

Swanson, P., J. Planas, L. G. Yan. 1995. An overview of the biological activities and receptors for salmon gonadotropin I and gonadotropin II. Aquaculture, 135:76-76.

Williams, J. G., G. M. Matthews. 1995. A review of flow and survival relationships for spring and summer chinook salmon, Oncorhynchus tshawytscha, from the Snake River Basin. Fishery Bulletin, 93:732-740.

1994

Devlin, R. H., T. Y. Yasaki, C. Biagi, E. M. Donaldson, P. Swanson, W. Chan. 1994. Extraordinary salmon growth. Nature, 261:209-210.

Duguay, S. J., P. Swanson, W. W. Dickhoff. 1994. Differential expression and hormonal regulation of alternatively spliced IGF-I mRNA transcripts in salmon. Journal of Molecular Endocrinology , 12:25-37.

Miwa, S., L. G. Yan, P. Swanson. 1994. Localization of two gonadotropin receptors in the salmon gonad by in vitro ligand autoradiography. Biology of Reproduction, 50:629-642.

Moriyama, S., P. Swanson, M. Nishii, A. Takahashi, H. Kawauchi, W. W. Dickhoff, E. M. Plisetskaya. 1994. Development of a homologous radioimmunoassay for coho salmon insulin-like growth factor-I. General and Comparative Endocrinology, 96:149-161.

Oppen-Berntsen, D. O., S. O. Olsen, C. J. Rong, G. L. Tarranger, P. Swanson, B. T. Walther. 1994. Plasma levels of eggshell ZR-proteins, estradiol-17β, and gonadotropins during an annual reproductive cycle of Atlantic salmon (Salmo salar). Journal of Experimental Zoology, 268:59-70.

Slater, C. H., C. B. Schreck, P. Swanson. 1994. Plasma profiles of sex steroids and gonadotropins in maturing female spring chinook salmon (Oncorhynchus tshawytscha). Comparative Biochemistry and Physiology, 109A:167-175.

1993

Naito, N., K. Suzuki, M. Nozaki, P. Swanson, H. Kawauchi, Y. Nakai. 1993. Ultrastructural characteristics of two distinct gonadotropes (GTH I- and GTH II-cells) in the pituitary of rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry, 11:241-246.

Planas, J., P. Swanson, W. W. Dickhoff. 1993. Regulation of testicular steroid production in vitro by gonadotropins (GTH I and GTH II) and cyclic AMP in coho salmon (Oncorhynchus kisutch). General and Comparative Endocrinology, 91:8-24.

Rand-Weaver, M., P. Swanson. 1993. Plasma somatolactin levels in coho salmon (Oncorhynchus kisutch) during smoltification and sexual maturation. Fish Physiology and Biochemistry, 11(1-6):175-182.

Saga, T., Y. Oota, M. Nozaki, P. Swanson. 1993. Salmonid pituitary gonadotrophs. III. Chronological appearance of GTH I and other adenohypophyseal hormones in the pituitary of the developing rainbow trout (Oncorhynchus mykiss irideus). General and Comparative Endocrinology, 92:233-241.

1992

Noso, T., Y. Hirano, P. Swanson, V. Lance, H. Kawauchi. 1992. Isolation and characterization of glycosylated and non-glycosylated prolactins from alligator and crocodile pituitaries. International Journal of Peptide and Protein Research, 39:250-257.

Planas, J., P. Swanson, M. Rand-Weaver, W. W. Dickhoff. 1992. Somatolactin stimulates in vitro gonadal steroidogenesis in coho salmon, Oncorhnynchus kisutch. General and Comparative Endocrinology, 87:1-5.

Rand-Weaver, M., P. Swanson, H. Kawauchi, W. W. Dickhoff. 1992. Somatolactin, a novel pituitary protein: Purification and plasma levels during reproductive maturation of coho salmon. Journal of Endocrinology, 133:393-403.

Rand-Weaver, M., P. Swanson, H. Kawauchi, W. W. Dickhoff. 1992. Somatolactin, a novel pitutary protein: purification and plasma levels during reproductive maturation of coho salmon. Journal of Endocrinology, 133:393-403.

Yan, L. G., P. Swanson, W. W. Dickhoff. 1992. A two-receptor model for salmon gonadotropins (GTH I and GTH II). Biology of Reproduction, 47:418-427.

1991

Gessel, M. H., J. G. Williams, D. A. Brege, R. Krcma, D. R. Chambers. 1991. Juvenile salmonid guidance at the Bonneville Dam Second Powerhouse, Columbia River, 1983-1989. North American Journal of Fisheries Management, 11:400-412.

Lovejoy, D. A., W. H. Fischer, D. B. Parker, J. E. McRory, M. Park, V. Lance, P. Swanson, J. E. River, N. M. Sherwood. 1991. Primary structure of two forms of gonadotropin-releasing hormone from brains of American alligator (Alligator mississippiensis). Regulatory Peptides, 33:105-116.

Swanson, P., K. Suzuki, H. Kawauchi, W. W. Dickhoff. 1991. Isolation and characterization of two coho salmon gonadotropins, GTH I and GTH II. Biology of Reproduction, 44:29-38.

Tyler, C., J. Sumpter, H. Kawauchi, P. Swanson. 1991. Involvement of gonadotropins I and II in the uptake of vitellogenin into vitellogenic oocytes of rainbow trout, Oncorhynchus mykiss. General and Comparative Endocrinology, 84:291-299.

Yan, L. G., P. Swanson, W. W. Dickhoff. 1991. Binding of gonadotropins (GTH I and GTH II) to coho salmon gonadal membrane preparations. Journal of Experimental Zoology, 258:221-230.

1990

Nozaki, M., N. Naito, P. Swanson, K. Miyata, Y. Nakai, Y. Oota, K. Suzuki, H. Kawauchi. 1990. Salmonid pituitary gonadotroph cells: I. Distinct cellular distributions of two gonadotropins, GTH I and GTH II. General and Comparative Endocrinology, 77:348-357.

Nozaki, M., N. Naito, P. Swanson, W. W. Dickhoff, Y. Nakai, K. Suzuki, H. Kawauchi. 1990. Salmonid pituitary gonadotroph cells: II. Ontogeny of GTH I and GTH II cells in the rainbow trout (Salmo gairdneri irideus). General and Comparative Endocrinology, 77:358-367.

1989

Dickhoff, W. W., L. G. Yan, E. M. Plisetskaya, C. V. Sullivan, P. Swanson, A. Hara, M. G. Bernard. 1989. Relationship between metabolic and reproductive hormones in salmonid fish. Fish Physiology and Biochemistry, 7:147-155.

Kawauchi, H., K. Suzuki, H. Itoh, P. Swanson, N. Naito, Y. Nagahama, M. Nozaki, Y. Nakai, S. Itoh. 1989. The duality of teleost gonadotropins. Fish Physiology and Biochemistry, 7:29-38.

Swanson, P., M. G. Bernard, M. Nozaki, K. Suzuki, H. Kawauchi, W. W. Dickhoff. 1989. Gonadotropins I and II in juvenile coho salmon. Fish Physiology and Biochemistry, 7:169-176.

1988

Kawauchi, H., K. Miyazima, P. Swanson, H. Cook, T. Kaneko, R. E. Peter, R. Suzuki, T. Hirano. 1988. Isolation and characterization of carp prolactin. General and Comparative Endocrinology, 70:407-417.

Plisetskaya, E. M., P. Swanson, M. G. Bernard, W. W. Dickhoff. 1988. Insulin in coho salmon (Oncorhynchus kisutch) during the parr to smolt transformation. Aquaculture, 72:151-164.

Swanson, P., E. G. Grau, L. M. Helms, W. W. Dickhoff. 1988. Thyrotropic activity of salmon glycoprotein hormones in the Hawaiian parrotfish thyroid in vitro. Journal of Experimental Zoology, 245:194-199.

1987

Sullivan, C. V., R. N. Iwamoto, W. W. Dickhoff. 1987. Thyroid hormones in blood plasma of developing salmon embryos. General and Comparative Endocrinology, 65:337-345.

Swanson, P., W. W. Dickhoff, A. Gorbman. 1987. Pituitary thyrotropin and gonadotropin of coho salmon (Oncorhynchus kisutch): separation by chromatofocusing. General and Comparative Endocrinology, 65:269-287.

Swanson, P., W. W. Dickhoff. 1987. Variation in thyroid response to thyroid-stimulating hormone in juvenile coho salmon (Oncorhynchus kisutch). General and Comparative Endocrinology, 68:473-485.

Book

In press

Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. In press. Coastwide Status Review of Coastal Cutthroat Trout (Oncorhynchus clarki clarki) by the National Marine Fisheries Service for listing under the Endangered Species Act. The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation. 2 Oregon Chapter of AFS, Portland, OR

2009

Kaplan, I. C., P. S. Levin. 2009. Ecosystem-based management of what? An emerging approach for balancing conflicting objectives in marine resource management. Springer, 736 p.

2002

Neely, K., O. W. Johnson, K. W. Myers, J. J. Hard. (rapporteurs) 2002. Proceedings of the 20th Northeast Pacific Pink and Chum Workshop, Seattle, Washington. 167 p.

Section

In press

Allendorf, F. W., J. J. Hard. In press. Human-Induced Evolution Caused By Unnatural Selection Through Harvest Of Wild Animals. In In the Light of Evolution III: Two Centuries of Darwin. National Academies Press, Washington, DC.

Hard, J. J. In press. Case study of Pacific salmon. In Dieckmann, U., O. R. Godoe, M. Heino, J. Mork. (Eds.) Fisheries-Induced Adaptive Change. Cambridge University Press, Cambridge, U.K.

Hard, J. J., W. H. Eldridge, K. A. Naish, C. Krueger. In press. Genetic consequences of size-selective fishing: implications for viability of Yukon River Chinook salmon. In Krueger, C., C. E. Zimmerman. (Eds.) Sustainability of the Arctic-Yukon-Kuskokwim Salmon Fisheries: What Do We Know About Salmon Ecology, Management, and Fisheries? American Fisheries Society, Anchorage.

2009

Beechie, T.J., G.R. Pess, M.M. Pollock, M.H. Ruckelshaus, P. Roni. 2009. Chapter 33: Restoring rivers in the 21st century: science challenges in a management context. Pages 695-716. Editors R.J. Beamish and B.J. Rothschild. In The Future of Fisheries Science in North America, Springer, Heidelberg.

Hamel, O. S., I. J. Stewart. 2009. Stock Assessment of Pacific Hake, Merluccius productus, (a.k.a. Whiting). In U.S. and Canadian Waters in 2009. Pacific Fishery Managment Council, Portland, OR, 246 p.

Ruckelshaus, M. H., T. E. Essington, P. S. Levin. 2009. Marine Ecosystem Based Management in Practice. Puget Sound, WA, USA. Page 392 in McLeod, K. L., H. Leslie. (Eds.) Ecosystem-Based Management for the Oceans. Island Press, San Francisco, CA.

2008

Helser, T. E., I. J. Stewart, O. S. Hamel. 2008. Stock Assessment of Pacific Hake, Merluccius productus, (a.k.a Whiting) in U.S. and Canadian Waters in 2008. In Status of the Pacific Coast Groundfish Fishery through 2008, Stock Assessment and Fishery Evaluation: Stock Assessments, STAR Panel Reports, and Rebuilding Analyses. Pacific Fishery Managment Council, Portland, OR, 128 p.

Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, and J. J. Hard. 2008. Summary of 1998 coast wide coastal cutthroat trout status review conducted by the National Marine Fisheries Service. Pages 3-4 in P. J. Connolly, T. H. Williams, and R. E. Gresswell, editors. The 2005 coastal cutthroat trout symposium: status, management, biology, and conservation. Oregon Chapter, American Fisheries Society, Portland.

Roni, P., M. McHenry, G. R. Pess, T. J. Beechie. 2008. Evaluating changes in salmon spawning habitat and spawners in the Elwha River following dam removal.

2007

A. R. Kapuscinski, J. J. Hard, R. Neira, K. M. Paulson, A. Ponniah, W. Kamonrat, W. Mwanja, I. A. Fleming, J. Gallardo, R. H. Devlin, and J. Trisak. 2007. Approaches to assessing gene flow. Pp. 112-150 in Kapuscinski, A. R., S. Li, K. R. Hayes, and G. Dana (editors), Environmental Risk Assessment of Genetically Modified Organisms, Vol 3: Methodologies for Transgenic Fish. CABI International, Wallingford, Oxfordshire, UK.

Senanan, W., J. J. Hard, A. Alcivar-Warren, J. Trisak, M. Zakaraia-Ismail, and M. L. Hernandez. 2007. Risk management: Post-approval monitoring and remediation. Pp. 272-290 in Kapuscinski, A. R., S. Li, K. R. Hayes, and G. Dana (editors), Environmental Risk Assessment of Genetically Modified Organisms, Vol 3: Methodologies for Transgenic Fish. CABI International, Wallingford, Oxfordshire, UK.

2006

Layton, D. F., S. T. Lee. 2006. From Ratings to Rankings: The Econometric Analysis of Stated Preference Ratings Data. In Explorations in Environmental and Natural Resource Economics. Edward Elgar Publishing, Inc., Williston, VT.

2005

Baldwin, D. H., N. L. Scholz. 2005. The electro-olfactogram: an in vivo measure of peripheral olfactory function and sublethal neurotoxicity in fish. Pages 257-276 in Ostrander, G. K. (Ed.) Techniques in Aquatic Toxicology. CRC Press, Boca Raton, FL.

Beechie, T. J., C. N. Veldhuisen, E. M. Beamer, D. E. Schuett-Hames, R. H. Conrad, P. DeVries. 2005. Monitoring Treatments to Reduce Sediment and Hydrologic Effects from Roads. Pages 35-65 in Roni, P. (Ed.) Monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.

Berejikian, B. A., P. Kline, T. A. Flagg. 2005. Release of captively reared adult anadromous salmonids for population maintenance and recovery: biological trade-offs and management considerations. Pages 233-245 in Nickum, M., P. Mazik, J. Nickum, D. MacKinlay. (Eds.) Propagated fish in resource management. American Fisheries Society Symposium 44. American Fisheries Society, Bethesda, Maryland.

Good, T. P., K. Barnas, D. M. Marsh, M. M. McClure, B. A. Ryan, B. P. Sandford, E. Casillas. 2005. Caspian Tern Predation on Juvenile Salmonid Outmigrants in the Columbia River Estuary. In Caspian Tern Management to Reduce Predation of Juvenile Salmonids in the Columbia River Estuary. U.S. Fish and Wildlife Service Migratory Birds and Habitat Programs, Portland, OR.

Pollock, M. M., T. J. Beechie, S. S. Chan, R. Bigley. 2005. Monitoring Restoration of Riparian Forests. Pages 67-96 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.

Pollock, M. M., T. J. Beechie, S. Chan, R. Bigley. 2005. Monitoring and evaluating riparian restoration efforts. In Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.

Roni, P., M. Liermann, C. E. Jordan, E. A. Steel. 2005. Steps for Designing a Monitoring and Evaluation Program for Aquatic Restoration. Pages 13-34 in Roni, P. (Ed.) Methods for monitoring stream and watershed restoration. American Fisheries Society, Bethesda, Maryland.

2004

Fairgrieve, W. T., C. L. Masada, W. C. McAuley, M. E. Peterson, M. S. Myers, M. S. Strom. 2004. Use of antibiotics and new vaccines to reduce mortality from bacterial kidney disease in chinook salmon: evaluation of toxic effects of long-term prophylactic use of azithromycin and erythromycin. Final Report for FY 1999-2002. In Berejikian, B. A., C. E. Nash. (Eds.) Research On Captive Broodstock Programs For Pacific Salmon. Report to Bonneville Power Administration for FY02, Project No. 1993-056-00, Contract No. 99-AI-17859.

Hard, J. J. 2004. Evolution of chinook salmon life history under size-selective harvest. Pages 315-337 in Hendry, A. P., S. C. Stearns. (Eds.) Evolution Illuminated. Salmon and their relatives. Oxford University Press.

Pess, G. R., T. J. Beechie, S. A. Morley, E. M. Beamer. 2004. Analyses for Phase II Recovery Planning: Identifying ecosystem restoration actions. Pages 40-59 in Beechie, T. J., P. Roni, E. A. Steel. (Eds.) Ecosystem recovery planning for listed salmon: An integrated assessment approach for salmon habitat. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-58, 183 p.

Rhodes, L. D., C. K. Rathbone, L. W. Harrell, R. K. Andrews, M. S. Strom. 2004. Use of antibiotics and new vaccines to reduce mortality from bacterial kidney disease in chinook salmon: study the efficacy of other vaccines. Final report for FY02-FY03. In Berejikian, B. A., C. E. Nash. (Eds.) Research On Captive Broodstock Programs For Pacific Salmon. Report to Bonneville Power Administration for FY02, Project No. 1993-056-00, Contract No. 99-AI-17859.

Roni, P., T. J. Beechie, G. R. Pess. 2004. Prioritizing restoration actions within watersheds. Pages 60-73 in Beechie, T. J., E. A. Steel, P. Roni. (Eds.) Ecosystem Recovery Planning for Listed Salmon: An Integrated Assessment Approach for Salmon Habitat. NOAA Technical Memorandum NMFS-NWFSC-58, Seattle, Washington.

Ruckelshaus, M. H., P. McElhany, M. M. McClure, S. Heppell. 2004. Chinook salmon in Puget Sound: Effects of spatially correlated catastrophes on persistence. Pages 208-218 in Ackakaya, R., M. Burgman, O. Kindvall, C. C. Wood, P. Sjogren-Gulve, J. S. Hatfield, M. A. McCarthy. (Eds.) Species Conservation and Management: Case Studies. Oxford Univ. Press.

2003

Beamer, E. M., T. J. Beechie, B. S. Perkowski, J. R. Klochak. 2003. Restoration of habitat forming processes: an applied restoration strategy for the Skagit River. Pages 157-183 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) (editors) Ecosystem recovery planning for listed salmon: an integrated assessment approach. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.

Beechie, T. J. 2003. An assessment approach for habitat recovery planning. Pages 5-17 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: an integrated assessment approach for salmon habitat. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.

Fairgrieve, W. T., C. L. Masada, W. C. McAuley, M. E. Peterson, M. S. Meyers, M. S. Strom. 2003. Use of antibiotics and new vaccines to reduce mortality from bacterial kidney disease in chinook salmon: evaluation of toxic effects of long-term prophylactic use of azithromycin and erythromycin. Final Report for FY 1999-2002. In Berejikian, B. A., C. E. Nash. (Eds.) Research on captive broodstock programs for Pacific salmon Research, FY2002-2003. Annual Report to Bonneville Power Administration, Contract No. 99-AI-17859.

Hamel, O. S., I. J. Stewart, A. E. Punt. 2003. Status and future prospects for the Pacific ocean perch resource in waters off Washington and Oregon as assessed in 2003. In Status of the Pacific coast groundfish fishery through 2003: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, OR.

Pess, G. R., T. J. Beechie, J. E. Williams, D. R. Whitall, J. I. Lange, J. R. Klochak. 2003. Chapter 8 - Watershed assessment techniques and the success of aquatic restoration activities. Pages 185-201 in Wissmar, R. C., P. A. Bisson. (Eds.) Strategies for Restoring River Ecosystems: Sources of Variability and Uncertainty in Natural and Managed Systems. American Fisheries Society, Bethesda, Maryland.

Punt, A. E., O. S. Hamel, I. J. Stewart. 2003. Rebuilding analysis for Pacific ocean perch for 2003. In Status of the Pacific coast groundfish fishery through 2003: Stock assessment and fishery evaluation. Pacific Fishery Management Council, Portland, OR.

Rhodes, L. D., C. K. Rathbone, L. W. Harrell, R. K. Andrews, M. S. Strom. 2003. Use of antibiotics and new vaccines to reduce mortality from bacterial kidney disease in chinook salmon: study the efficacy of other vaccines. Final report for FY02-FY03. In Berejikian, B. A., C. E. Nash. (Eds.) Research on captive broodstock programs for Pacific salmon Research, FY2002-2003. Annual Report to Bonneville Power Administration, Contract No. 99-AI-17859.

Sanderson, B. L., E. A. Steel, T. J. Beechie, G. R. Pess, M. B. Sheer, C. A. Campbell. 2003. Analyses for Phase I recovery planning: setting recovery goals. Pages 18-39 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: an integrated assessment approach for salmon habitat. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.

Schumacher, J. D., N. A. Bond, R. D. Brodeur, P. A. Livingston, J. M. Napp, P. J. Stabeno. 2003. Climate change in the Southeastern Bering Sea and some consequences for biota. Pages 17-40 in Hempel, G., K. Sherman. (Eds.) Large Marine Ecosystems of the World -- Trends in Exploitation, Protection and Research. Elsevier Science, Amsterdam.

Steel, E. A., M. Liermann, P. McElhany, N. L. Scholz, A. Cullen. 2003. Managing uncertainty in habitat recovery planning. In Beechie, T. J., P. Roni, E. A. Steel, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: An integrated assessment approach for salmon habitat. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-58, 183 p.

2002

Beechie, T. J., G. R. Pess, E. M. Beamer, G. Lucchetti, R. E. Bilby. 2002. Role of watershed assessments in recovery planning for salmon. Pages 194-225 in Montgomery, D. R., S. Bolton, D. B. Booth. (Eds.) Restoration of Puget Sound Rivers. University of Washington Press, Seattle, WA.

Campbell, B., B. R. Beckman, W. T. Fairgrieve, J. T. Dickey, P. Swanson. 2002. Effects of growth on age of maturation, fecundity, and egg size in female coho salmon: Final Report. In Berejikian, B. A. (Ed.) Research on Captive Broodstock Programs for pacific Salmon. Report to Bonneville Power Administration for FY 01. Contract No. 199305600.

Hard, J. J. 2002. Genetic risks of hatchery salmon production to wild salmon. Pages 72-85 in Orr, C., R. Routledge, P. Gallaugher. (Eds.) Hatcheries and the protection of wild salmon. Speaking for the Salmon workshop proceedings. Centre for Coastal Studies and Continuing Studies in Science at Simon Fraser University, Burnaby, B.C.

Hard, J. J. 2002. Inbreeding. Pages 96-110 in Berejikian, B. A. (Ed.) Research on captive broodstock technology for Pacific salmon. Annual Report to Bonneville Power Administration, Project No. 93-56 (Contract No. 00005227).

Hard, J. J. 2002. Update on the status of pink salmon in the Pacific Northwest. Pages 47-51 in Neely, K., O. W. Johnson, K. W. Myers, J. J. Hard. (rapporteurs) Proceedings of the 20th Northeast Pacific Pink and Chum Workshop, Seattle, Washington.

Levin, P. S., C. B. Grimes. 2002. Reef fish ecology and grouper conservation and management. Pages 377-389 in Sale, P. F. (Ed.) Advances in ecology of fishes on coral reefs. Academic Press, San Diego.

McAuley, W. C., W. T. Fairgrieve, D. A. Frost, T. A. Flagg. 2002. Growth, survival and reproductive performance of Lake Wenatachee sockeye salmon (Brood year 1991) reared in either freshwater or seawater. Page 24 in Swanson, P., C. E. Nash. (Eds.) Research on captive broodstock programs for Pacific Salmon Research. Annual Report to Bonneville Power Administration. Contract No. 00005227.

McClure, M. M., G. R. Pess. 2002. Revision of water conservation. In McGraw-Hill Encyclopedia of Science and Technology, 9th Ed.

Pess, G. R., D. R. Montgomery, T. J. Beechie, L. Holsinger. 2002. Anthropogenic alterations to the biogeography of salmon in Puget Sound. Pages 129-154 in Montgomery, D. R., S. Bolton, D. B. Booth. (Eds.) Restoration of Puget Sound Rivers. University of Washington Press, Seattle, WA.

Shearer, K. D., P. Parkins, B. A. Gadberry, B. Campbell, J. T. Dickey, P. Swanson. 2002. Effects of growth rate/size on the incidence of early sexual maturation in male spring chinook salmon (Oncorhynchus tshawytscha): Final Report. In Berejikian, B. A. (Ed.) Research on Captive Broodstock Programs for pacific Salmon. Report to Bonneville Power Administration for FY 01. Contract No. 199305600.

Strom, M. S., L. D. Rhodes, S. C. Corbett, C. K. Rathbone, L. W. Harrell. 2002. Use of antibiotics and new vaccines to reduce mortality from bacterial kidney disease in chinook salmon: study the efficacy of other vaccines. Final report for FY01 and FY02. In Berejikian, B. A., C. E. Nash. (Eds.) Research On Captive Broodstock Programs For Pacific Salmon. Report to Bonneville Power Administration for FY01, Project No. 1993-056-00, Contract No. 00005227.

Swanson, P., B. Campbell, B. R. Beckman, D. A. Larsen, J. T. Dickey, K. A. Cooper, N. Hodges, P. Kline, K. D. Shearer, D. Venditti, G. A. Winans, G. Young. 2002. Monitoring reproductive development in captive broodstock and anadromous hatchery stocks of Snake River spring chinook salmon during the freshwater phase of adult migration: Progress Report. In Berejikian, B. A. (Ed.) Research on Captive Broodstock Programs for pacific Salmon. Report to Bonneville Power Administration for FY 01. Contract No. 199305600.

Williams, J. G. 1998. "Fish passage in the Columbia River, U.S.A., and its tributaries: problems and solutions." In M. Jungwirth, S. Schmutz, and S. Weiss (editors), Fish migration and fish bypasses. p. 180-191. Blackwell Science, Ltd., Oxford, England

2001

Beechie, T. J., B. D. Collins, G. R. Pess. 2001. Holocene and recent geomorphic processes, land use and salmonid habitat in two north Puget Sound river basins. Pages 37-54 in Dorava, J. B., D. R. Montgomery, F. Fitzpatrick, B. Palcsak. (Eds.) Geomorphic processes and riverine habitat, Water Science and Application. American Geophysical Union, Washington D.C.

Berejikian, B. A., A. LaRae, E. P. Tezak. 2001. Factors affecting acquired predator recognitio and fright responses in hatchery-reared chinook salmon. In Development of a natural rearing system to improve supplemental fish quality, 1999-2000. Report to Bonneville Power Administration, Contract DE-A179-91BP20651.

Berejikian, B. A., E. P. Tezak, S. Riley, A. LaRae. 2001. Territorial behavior and relative competitive ability of juvenile steelhead (Oncorhynchus mykiss) reared in enriched and conventional hatchery tanks and a stream environment. In Development of a natural rearing system to improve supplemental fish quality, 1999-2000. Report to Bonneville Power Administration, Contract DE-A179-91BP20651.

Campbell, B., B. R. Beckman, W. T. Fairgrieve, J. T. Dickey, P. Swanson. 2001. Effects of growth on age of maturity, egg size, and fecundity in coho salmon: Progress Report. In Berejikian, B. A. (Ed.) Research On Captive Broodstock Programs For Pacific Salmon. Report to Bonneville Power Administration for FY00 , Contract No. 199305600.

Campbell, B., B. R. Beckman, W. T. Fairgrieve, J. T. Dickey, P. Swanson. 2001. Effects of growth on timing of maturation, fecundity, egg size and egg quality in coho salmon: Progress report. In Berejikian, B. A., K. A. Naish. (Eds.) Captive Broodstock Research, FY2000 Annual Report to Bonneville Power Administration, Contract No. 00005227.

Hard, J. J. 2001. Inbreeding. Pages 86-94 in Berejikian, B. A., C. E. Nash. (Eds.) Research on captive broodstock technology for Pacific salmon. Annual Report to Bonneville Power Administration, Project No. 93-56 (Contract No. 00005227).

Johnson, O. W., A. M. Garrett, W. S. Grant, K. Neely, M. H. Ruckelshaus, F. W. Waknitz, J. J. Hard. 2001. Summary of status review of coastal cutthroat trout from the Pacific northwest. Pages 255-257 in Brewin, M. K., A. J. Paul, M. Monita. (Eds.) Bull trout II conference proceedings. Trout Unlimited Canada, Calgary, Alberta.

Ledgerwood, R. D., B. A. Ryan, R. N. Iwamoto. 2001. Estuarine and nearshore-ocean acoustic tracking of juvenile spring chinook salmon from the Columbia River. Pages 245-255 in Moore, A., I. Russell. (Eds.) Advances in fish telemetry: proceedings of the 3rd conference on fish telemetry in Europe, June 20-25, 1999, Norwich, UK. Centre for Environment, Fisheries, and Aquaculture Science, Lowestoft, UK.

Maynard, D. J., G. C. McDowell, G. A. Snell, A. LaRae, J. L. Hackett, T. A. Flagg, C. V. Mahnken. 2001. Coordinating the Integration of NATURES Variables into the Forks Creek Study. In Maynard, D. J., B. A. Berejikian, T. A. Flagg, C. V. Mahnken. (Eds.) Development of a natural rearing system to improve supplemental fish quality 1996-1998.

Maynard, D. J., G. C. McDowell, G. A. Snell, A. LaRae, J. L. Hackett, T. A. Flagg, C. V. Mahnken. 2001. Coordinating the integration of natures variables into the Forks Creek study. Pages 60-79 in Maynard, D. J., B. A. Berejikian, T. A. Flagg, C. V. Mahnken. (Eds.) Development of a natural rearing system to improve supplemental fish quality 1996-1998. Report to Bonneville Power Administration. Contract DE-A179-91BP20651.

Maynard, D. J., G. C. McDowell, G. A. Snell, T. A. Flagg, C. V. Mahnken. 2001. Development of a raceway exercise system for fall chinook salmon. Pages 44-52 in Maynard, D. J., B. A. Berejikian, T. A. Flagg, C. V. Mahnken. (Eds.) Development of a natural rearing system to improve supplemental fish quality 1996-1998, Bonneville Power Administration, Contract DE-A179-91BP20651.

Shearer, K. D., B. Campbell, J. T. Dickey, B. A. Gadberry, P. Parkins, P. Swanson. 2001. Effects of growth rate on early male maturation and adult quality on spring Chinook salmon: Progress report. In Berejikian, B. A., K. A. Naish. (Eds.) Captive Broodstock Research, FY2000 Annual Report to Bonneville Power Administration, Contract No. 00005227.

Strom, M. S., L. W. Harrell, W. T. Fairgrieve, M. E. Peterson, C. K. Rathbone, L. D. Rhodes. 2001. Use of antibiotics and new vaccines to reduce mortality from Bacterial Kidney Disease in chinook salmon. Final report for FY00-FY01. In Berejikian, B. A., C. E. Nash. (Eds.) Research On Captive Broodstock Programs For Pacific Salmon. Report to Bonneville Power Administration for FY01, Project No. 1993-056-00, Contract No. 99-AI-17859.

2000

Berejikian, B. A., E. P. Tezak, S. L. Schroder, C. M. Knudsen. 2000. The effects of modified rearing environments on the vulnerability of chinook salmon (Oncorhynchus tshawytscha) juveniles to natural predators. Pages 36-45 in Development of a natural rearing system to improve supplemental fish quality, 1996-1998. Report to Bonneville Power Administration, Contract DE-A179-91BP20651.

Brodeur, R. D., P. J. Bentley, R. L. Emmett, T. W. Miller, W. T. Peterson. 2000. Sardines in the ecosystem of the Pacific Northwest. Pages 90-94 in Proc. Sardine 2000 Symposium. Pacific States Marine Fish. Comm.

Hard, J. J., R. G. Kope, W. S. Grant. 2000. Endangered Species Act review of the status of pink salmon from Washington, Oregon, and California. Pages 103-110 in Knudsen, E. E., C. R. Steward, D. D. MacDonald, J. E. Williams, D. W. Reiser. (Eds.) Sustainable Fisheries Management: Pacific Salmon. Lewis Publishers, Boca Raton, FL.

Hard, J. J. 2000. Genetic interactions between wild and cultured salmon. Pages 8-18 in Gallaugher, P., C. Orr. (Eds.) Aquaculture and the protection of wild salmon. Speaking for the Salmon workshop proceedings. Continuing Studies in Science at Simon Fraser University, Burnaby, B.C.

Hard, J. J. 2000. Inbreeding. In Berejikian, B. A. (Ed.) Research on captive broodstock programs for Pacific salmon. Report to Bonneville Power Administration, Contract No. 1999A117859, Proj. No. 199305600 (BPA Report DOE/BP-17859-1), June 2000.

Hard, J. J., W. K. Hershberger. 2000. Research on quantitative genetic consequences of captive broodstock programs for Pacific salmon populations. In Research on captive broodstock technology for Pacific salmon. Annual Report to Bonneville Power Administration, Project No. 93-56 (Contract No. DE-AI79-93BP55064).

Ledgerwood, R. D., B. A. Ryan, R. N. Iwamoto. 2000. Estuarine and nearshore-ocean sonic tracking of juvenile spring chinook salmon from the Columbia River. In Proceedings of the 3rd conference on fish telemetry in Europe, June 20-25, 1999, Norwich, UK. Centre for Environment, Fisheries, and Aquaculture Science, Lowestoft, UK.

Scholz, N. L., J. W. Truman. 2000. Invertebrate models for studying NO-mediated signaling. Pages 417-441 in Steinbusch, H., J. De Vente, S. R. Vincent, A. Bjorklund, T. Hokfelt. (Eds.) Handbook of Chemical Neuroanatomy Vol. 17: Functional Neuroanatomy of the Nitric Oxide System. Elsevier.

Shearer, K. D., P. Swanson, B. Campbell, B. R. Beckman, P. Parkins, J. T. Dickey. 2000. The effect of growth rate and a low fat diet on the incidence of early sexual maturation in male spring chinook salmon (Oncorhynchus tshawytscha). In Research on Captive Broodstock Technology for Pacific Salmon. Annual Report, 1996. U. S. Department of Energy, BPA.

Shearer, K. D., J. T. Silverstein, W. W. Dickhoff, E. M. Plisetskaya. 2000. The roles of growth and fatness in the early sexual development of male 1+ age spring chinook salmon (Oncorhynchus tshawytscha). In Berejikian, B. A. (Ed.) Research on Captive Broodstock Technology for Pacific Salmon. Annual Report, 1996. U. S. Department of Energy, BPA. Project Number 93-056. Contract Number DE-A179-93BP55064.

Strom, M. S., W. T. Fairgrieve, L. W. Harrell, C. K. Rathbone. 2000. Efficacy; toxicity of treatments for Bacterial Kidney Disease in chinook salmon. Pages 105-110 in Berejikian, B. A. (Ed.) Research on captive broodstock programs for Pacific salmon Research, FY2000 Annual Report to Bonneville Power Administration, Contract No. 99-AI-17859.

1999

Baker, D. M., B. Davies, A. L. Pierce, W. W. Dickhoff, P. Swanson. 1999. Effects of fasting and metabolic hormones on the reproductive axis of coho salmon, Oncorhynchus kisutch. Pages 478-480 in Norberg, B., O. S. Kjesbu, G. L. Taranger, E. Andersson, S. O. Stefansson. (Eds.) Proceeding of the 6th International Symposium on Reproductive Physiology of Fish, Fish Symp 99, Bergen, Norway, July 4-10, 1999.

Davies, B., J. T. Dickey, P. Swanson. 1999. Regulation of FSH and LH in coho salmon (Oncorhynchus kisutch): The action of recombinant human activin A and salmon testis extract. Page 486 in Norberg, B., O. S. Kjesbu, G. L. Taranger, E. Andersson, S. O. Stefansson. (Eds.) Reproductive Physiology of Fish, Fish Symp 99, Bergen, Norway.

Hard, J. J. 1999. Status review of pink salmon in the Pacific Northwest. Pages 166-173 in Hawkins, S. (rapporteur) Proceedings of the 19th Northeast Pacific pink and chum salmon workshop.

Weiltzen, F., O. Anderson, T. Kobayashi, P. Swanson. 1999. FSH and LH from pituitary glands of Atlantic halibut (Hippoglossus hippoglossus L. ). Pages 475-477 in Norberg, B., O. S. Kjesbu, G. L. Taranger, E. Andersson, S. O. Stefansson. (Eds.) Reproductive Physiology of Fish, Fish Symp 99, Bergen, Norway.

1998

McCain, B. B., A. D. MacCall, R. L. Emmett, R. D. Brodeur. 1998. Marine Resources: Pacific Coast Region. Pages 814-823 in Mac, M. J., P. A. Opler, C. E. Puckett Haecker, P. D. Doran. (Eds.) Status and Trends of The Nation's Biological Resources. Vol. 2. U. S. Department of the Interior, U. S. Geological Survey, Reston, VA.

Muir, W. D., S. G. Smith, E. E. Hockersmith, M. B. Eppard, W. P. Connor. 1998. Passage survival of hatchery subyearling fall chinook salmon to Lower Granite, Little Goose, and Lower Monumental Dams, 1996. In Williams, J. G., T. C. Bjornn. (Eds.) Fall chinook salmon survival and supplementation studies in the Snake and Lower Snake River reservoirs, 1996.

Shearer, K. D., P. Swanson. 1998. The role of whole body lipid saturation of male spring chinook salmon (Oncorhynchus tshawytscha). In: (Swanson et al. , Eds), Research On. Pages 6-1 to 6-32 in Captive Broodstock Technology For Pacific Salmon, Annual Report 1995. BPA Project No. 93-056, Contract No. DE-AI79-93BPA55064.

1997

Davies, B., P. Swanson. 1997. Isolation of gonadal proteins that stimulate gonadotropins in coho salmon (Oncorhynchus kisutch). Pages 273-276 in Kawashima, S., S. Kikuyama. (Eds.) Advances in Comparative Endocrinology. Monduzzi Editore, Bologna, Italy.

Larsen, D. A., S. Moriyama, J. T. Dickey, B. R. Beckman, P. Swanson, W. W. Dickhoff. 1997. Regulation of the pituitary-thyroid axis during smoltification of coho salmon: Quantification of TSH, TSH mRNA, and thyroid hormones. Pages 1083-1086 in Kawashima, S., S. Kikuyama. (Eds.) Advances in Comparative Endocrinology. XIIIth International Congress of Comparative Endocrinology. Monduzzi Editore, Bologna, Italy.

Smith, S. G., W. D. Muir, E. E. Hockersmith, M. B. Eppard, W. P. Connor. 1997. Passage survival of natural and hatchery subyearling fall chinook salmon to Lower Granite, Little Goose, and Lower Monumental Dams. In Williams, J. G., T. C. Bjornn. (Eds.) Fall chinook salmon survival and supplementation studies in the Snake and Lower Snake River reservoirs, 1995.

Suter, H., P. Swanson, G. Young. 1997. The hypophysial duct of a euryhaline teleost, Galaxias maculatus. Pages 761-765 in Kawashima, S., S. Kikuyama. (Eds.) Advances in Comparative Endocrinology. Monduzzi Editore, Bologna, Italy.

1996

Berejikian, B. A., D. J. Maynard, T. A. Flagg, C. V. Mahnken. 1996. Instream postrelease growth and survival of chinook salmon smolts subjected to predator training and alternate feeding strategies. Pages 113-127 in Development of a natural rearing system to improve supplemental fish quality, 1991-1995. Report to Bonneville Power Administration, Contract DE-A179-91BP20651.

Hard, J. J., W. K. Hershberger. et al 1996. Research on quantitative genetic consequences of captive broodstock programs for Pacific salmon populations. Pages 8-1 to 8-28 in Swanson, P. (Ed.) Research on Captive Broodstock Technology for Pacific Salmon. Annual Report 1995. BPA Report DOE/BP-55064. Bonneville Power Administration, Portland, Oregon.

Maynard, D. J., T. A. Flagg, B. A. Berejikian. 1996. A comparison of hatchery and wild salmonid biology. Pages 13-26 in Maynard, D. J., T. A. Flagg, C. V. Mahnken. (Eds.) Development of a natural rearing system to improve supplemental fish quality, 1991-1995. Report to Bonneville Power Administration, Contract DE-A179-91BP20651.

Maynard, D. J., E. P. Tezak, B. A. Berejikian, T. A. Flagg. 1996. The effect of feeding spring chinook salmon a live food supplemented diet during acclimation, 1995. Pages 98-112 in Maynard, D. J., T. A. Flagg, C. V. Mahnken. (Eds.) Development of a natural rearing system to improve supplemental fish quality, 1991-1995. Report to Bonneville Power Administration, Contract DE-A179-91BP20651.

1995

Berejikian, B. A., E. P. Tezak, L. K. Park, S. L. Schroder, C. M. Knudsen, J. J. Hard. 1995. Reproductive success of captively reared and wild coho salmon (Oncorhynchus kisutch). In Swanson, P. (Ed.) Captive broodstock evaluation. Report to Bonneville Power Administration, Contract DE-AI79-93BP55064.

Dickey, J. T., P. Swanson, P. Thomas, R. Goetz. 1995. Development of RNase protection assays for quantification of gonadotropin (GTH I and GTH II) subunit transcript levels in coho salmon (Oncorhynchus kisutch). Page 26 in Reproductive Physiology of Fish. Univ. Texas, Seagrant Publications.

Dickey, J. T., P. Swanson. 1995. Development of RNase protection assays for quantification of gonadotropin (GTH I and GTH II) subunit transcript levels in coho salmon (Oncorhynchus kisutch). Page 28 in Proceedings of the Fifth International Symposium on the Reproductive Physiology of Fish. FishSymp 95, Austin, Texas.

Dittman, A., L. G. Yan, P. Swanson. 1995. Cloning and functional expression of the coho salmon (Oncorhynchus kisutch) gonadotropin receptor. Page 307 in Thomas, P., R. Goetz. (Eds.) Reproductive Physiology of Fish. Univ. Texas, Seagrant Publications.

Hard, J. J., W. K. Hershberger. 1995. Quantitative genetic consequences of captive broodstock programs for anadromous Pacific salmon (Oncorhynchus spp.). Pages 2-1 to 2-75 in An assessment of the status of captive broodstock technology for Pacific salmon. Final Report to Bonneville Power Admin., Proj. No. 93-56, Contract No. DE-AI79-93BP55064, June 1995.

Maestro, M. A., J. Planas, P. Swanson, J. Gutierrez. 1995. Insulin-like growth factor I (IGF-I) in the fish ovary. Pages 279-281 in Thomas, P., R. Goetz. (Eds.) Reproductive Physiology of Fish. Univ. Texas, Seagrant Publications.

Mananos, E. L., P. Swanson, J. Stubblefield, Y. Zohar. 1995. Purification of striped bass (Morone saxatilis) gonadotropin II and development of an enzyme immunoassay for its measurement. Page 36 in Thomas, P., R. Goetz. (Eds.) Reproductive Physiology of Fish. Univ. Texas, Seagrant Publications.

Planas, J., J. Athos, P. Swanson. 1995. Regulation of ovarian steroidogenesis in vitro by gonadotropins during sexual maturation in coho salmon (Oncorhynchus kisutch). Pages 296-297 in Thomas, P., R. Goetz. (Eds.) Reproductive Physiology of Fish. Univ. Texas, Seagrant Publications.

Swanson, P. 1995. Environmental and endocrine control of reproduction in cultured salmonids. Pages 3-1 to 3-66 in Flagg, T. A., C. V. Mahnken. (Eds.) An assessment of captive broodstock technology for Pacific salmon. Report to Bonneville Power Administration, Contract DE-AI79 93BP55064, 285 p.

1994

Duan, C. M., S. J. Duguay, P. Swanson, W. W. Dickhoff, E. M. Plisetskaya. 1994. Regulation of insulin-like growth factor gene expression in salmon. Pages 365-372 in Peter, R. E., S. S. Tobe. (Eds.) Perspectives in Endocrinology. National Research Council, Ottawa, Canada.

Duan, C. M., S. J. Duguay, P. Swanson, W. W. Dickhoff, E. M. Plisetskaya. 1994. Tissue-specific expression of insulin-like growth factor I messenger ribonucleic acids in salmonids: Developmental, hormonal, and nutritional regulation. Pages 365-372 in Davies, K. G., R. E. Peter, S. S. Tobe. (Eds.) Perspectives in Comparative Endocrinology. National Research Council of Canada, Ottawa.

Hard, J. J. 1994. Genetics and salmon management: Expanded summary of a panel discussion. Pages 151-163 in Application of DNA technology to the management of Pacific salmon. NOAA Tech. Memo. NMFS-NWFSC-17.

Swanson, P. 1994. Radioimmunoasays for fish growth hormone, prolactin and somatolactin. Pages 545-556 in Hochachka, P. W., T. P. Mommsen. (Eds.) Biochemistry and Molecular Biology of Fishes, 3: Analytical Techniques. Elsevier, New York.

Williams, J. G., M. H. Gessel. 1994. Fish diversion and screening devices: Is there a relationship to fish behavior? Pages 135-140 in Proceedings of the Symposium on Fish Passage Policy and Technology, 1-2 September 1993, Portland, OR. Am. Fish Soc., Bioeng. Sec, Bethesda, MD.

1991

Planas, J., P. Swanson, W. W. Dickhoff, A. P. Scott, J. Sumpter. 1991. Regulation of testicular steroidogenesis by coho salmon gonadotropins, GTH I and GTH II, in vitro. Page 103 in Reproductive Physiology of Fish. Univ. of East Anglia, Norwich, England.

Swanson, P., A. P. Scott, J. Sumpter. 1991. Salmon gonadotropins: Reconciling old and new ideas. Pages 2-7 in Reproductive Physiology of Fish. Univ. of East Anglia, Norwich, England.

1990

Dickhoff, W. W., P. Swanson. 1990. Functions of salmon pituitary glycoprotein hormones: The maturational surge hypothesis. Pages 342: 349-356 in Epple, A., C. G. Scanes, M. H. Stetson. (Eds.) Progress in Comparative Endocrinology, Progress in Clinical and Biological Research.

1988

Kawauchi, H., K. Suzuki, H. Itoh, P. Swanson. 1988. Duality of salmon pituitary gonadotropins. Pages 227-232 in Imura, H., e. al. (Eds.) Progress in Endocrinology. Elsevier Science Publishers, New York.

Williams, J. G., M. H. Gessel, D. R. Chambers. 1988. Juvenile salmonid bypass system research at Bonneville Second Powerhouse, Columbia River. Pages [1-41]-[1-54] in Proceedings: Fish protection at steam and hydroelectric power plants. Electric Power Research Institute, Palo Alto, CA.

1987

Kawauchi, H., K. Suzuki, H. Itoh, P. Swanson, Y. Nagahama. 1987. Duality of salmon pituitary gonadotropins. Pages 15-18 in Ohnishi, E., Y. Nagahama, H. Ishizaki. (Eds.) Proceedings of the 1st Congress of the Asia and Oceania Society of Comparative Endocrinology. Nagoya University Corp, Japan.

Swanson, P., K. Suzuki, H. Kawauchi. 1987. Effects of des Gly10[D-Ala6] GnRH ethylamide on secretion of two distinct gonadotropins by salmonid pituitaries in vitro. Pages 93-94 in Ohnishi, E., Y. Nagahama, H. Ishizaki. (Eds.) Proceedings of the 1st Congress of the Asia and Oceania Society of Comparative Endocrinology. Nagoya University Corp., Japan.

Contract Report

2009

Achord, S., B. P. Sandford, E. E. Hockersmith, M. G. Nesbit, N. D. Dumdei, J. L. Lamb, K. W. McIntyre, N. N. Paasch, J. G. Williams. 2009. Monitoring the migrations of wild Snake River spring/summer Chinook salmon juveniles, 2007-2008. BPA by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the Bonneville Power Administration, Contract 00031849, Project No. 1991-028-00, 96 p.

2005

Hard, J.J., and K.A. Naish. 2005. Evaluate effects of inbreeding and inbreeding depression. In B.A. Berejikian (editor), Research on captive broodstock programs for Pacific salmon, 2004-2005 Annual report, Project No. 199305600, p. 138-160. Available Bonneville Power Administration (BPA Report DOE/BP-00017690-1, 162 electronic pages), Environment Fish and Wildlife, P.O. Box 3621, Portland, OR 97208.

Smith, S. G., W. D. Muir, D. M. Marsh, J. G. Williams. 2005. Survival estimates for the passage of spring-migrating juvenile salmonids through Snake and Columbia River dams and reservoirs, 2004. Report by National Marine Fisheries Service to the Bonneville Power Administration, Contract 00004922, Project No. 199302900.

2004

Achord, S., R. A. McNatt, E. E. Hockersmith, B. P. Sandford, K. W. McIntyre, N. N. Paasch, J. G. Williams, G. M. Matthews. 2004. Monitoring the Migrations of Wild Snake River Spring/Summer Chinook Salmon Smolts, 2003. Report to the Bonneville Power Administration, Contract 00005619, 107 electronic pages.

Berejikian, B. A., J. A. Scheurer, J. Lee, D. M. Van Doornik, E. Volk, T. Johnson. 2004. Evaluation of conservation hatchery rearing and release strategies for steelhead recovery in the Hamma Hamma River. Annual Report to the Hatchery Scientific Review Group, IAC Grant #01-042, 33 p.

Hard, J.J., and K.A. Naish. 2004. Evaluate effects of inbreeding and inbreeding depression. In B.A. Berejikian (editor), Research on captive broodstock programs for Pacific salmon, 2003-2004 Annual report, Project No. 199305600, p.164-189. Available Bonneville Power Administration (BPA Report DOE/BP-00005227-4, 190 electronic pages), Environment Fish and Wildlife, P.O. Box 3621, Portland, OR 97208.

Muir, W. D., R. A. McNatt, G. A. Axel, S. G. Smith, D. M. Marsh, J. G. Williams. 2004. Survival of subyearling fall chinook salmon in the free-flowing Snake River and lower Snake River Reservoirs, 2003, and from McNary Dam tailrace to John Day Dam tailrace in the Columbia River, 1999-2002. Report to the Bonneville Power Administration, Contract DE-AI179-93BP10891, Project No. 199302900.

2003

Berejikian, B. A., J. A. Scheurer, J. Lee, D. M. Van Doornik, E. Volk, T. Johnson, R. Endicott. 2003. Evaluation of conservation hatchery rearing and release strategies for steelhead recovery in the Hamma Hamma River. Annual Report to the Hatchery Scientific Review Group, IAC Grant #01-042, 25 p.

Maynard, D. J., B. A. Berejikian, T. A. Flagg, S. Riley. 2003. Development of a Natural Rearing System to Improve Supplemental Fish Quality. 1999-2003 Progress Report. Report to the Bonneville Power Administration, Project No. 1991-05500, 188 p. (BPA Report DOE/BP-00000548-1)

2002

Berejikian, B. A., D. M. Van Doornik, E. Volk, T. Johnson, J. Lee, J. Atkins, R. Endicott. 2002. Evaluation of conservation hatchery rearing and release strategies for steelhead recovery in the Hamma Hamma River. Annual report to the Hatchery Scientific Review Group, IAC Grant #01-042, 25 p.

Zabel, R. W., S. G. Smith, W. D. Muir, D. M. Marsh, J. G. Williams, J. R. Skalski. 2002. Survival estimates for the passage of spring-migrating juvenile salmonids through Snake and Columbia River dams and reservoirs, 2001. Annual Report to the Bonneville Power Administration, Portland OR, Contract DE-AI79-93BP10891, Project No. 93-29, 95 p.

2001

Berejikian, B. A., D. M. Van Doornik, E. Volk, T. Johnson, B. Smith, R. Endicott. 2001. Evaluation of conservation hatchery rearing and release strategies for steelhead recovery in the Hamma Hamma River. Annual report to the Hatchery Scientific Review Group, IAC Grant #01-042, 21 p.

Maynard, D. J., B. A. Berejikian, T. A. Flagg, C. V. Mahnken. 2001. Development of a natural rearing system to improve supplemental fish quality. 1996-1998 final. Report to the Bonneville Power Administration, Contract 00004768, 175 p.

Zabel, R. W., S. G. Smith, W. D. Muir, D. M. Marsh, J. G. Williams, J. R. Skalski. 2001. Survival estimates for the passage of spring-migrating juvenile salmonids through Snake and Columbia River dams and reservoirs, 2000. Report to the U.S. Department of Energy, Bonneville Power Administration, Division of Fish and Wildlife, Contract DE-AI79-93BP10891, Project No. 93-29, 62 p.

2000

Berejikian, B. A. (Ed.) 2000. Research on captive broodstock programs for pacific salmon: performance period 1 June 1999 through 31 May 2000. Report to the Bonneville Power Administration, Contract 99-AI-17859, 114 p.

Smith, S. G., W. D. Muir, S. Achord, E. E. Hockersmith, B. P. Sandford, J. G. Williams, J. R. Skalski. 2000. Survival estimates for the passage of juvenile salmonids through Snake and Columbia River dams and reservoirs, 1998. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 80 p. Available on BPA web site

Smith, S. G., W. D. Muir, G. A. Axel, R. W. Zabel, J. G. Williams, J. R. Skalski. 2000. Survival estimates for the passage of juvenile salmonids through Snake and Columbia River dams and reservoirs, 1999. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 70 p. Available on BPA web site

1999

Hockersmith, E. E., S. G. Smith, W. D. Muir, B. P. Sandford, J. G. Williams, J. R. Skalski. 1999. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1997. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 60 p.

1997

Ledgerwood, R. D., E. M. Dawley, B. W. Peterson, R. N. Iwamoto. 1997. Estuarine recovery of PIT-tagged juvenile salmonids from the Lower Granite Dam transportation study, 1996. Report to the U.S. Army Corps of Engineers, Contract E8960100, 54 pgs. plus appendice p.

Smith, S. G., W. D. Muir, E. E. Hockersmith, S. Achord, M. B. Eppard, T. E. Ruehle, J. G. Williams, J. R. Skalski. 1997. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1996. Draft Annual Report to the Bonneville Power Administration, Portland, OR, Contract DE-AI79-93BP10891, Project 93-29, and U.S. Army Corps of Engineers, Walla Walla, WA, Project E86940119, Contract DE-AI79-93BP10891.

Swan, G. A., M. B. Eppard, E. E. Hockersmith, B. P. Sandford, B. L. Iverson, P. A. Ocker, M. A. Kaminski, R. N. Iwamoto. 1997. Juvenile radio-telemetry study at Ice Harbor Dam, 1995. Report to the U.S. Army Corps of Engineers, Contract E86-95-0113, 34 p.

Williams, J. G., T. C. Bjornn. 1997. Fall chinook salmon survival and supplementation studies in the Snake River and Lower Snake River Reservoirs, 1995. Report to the Bonneville Power Administration, Contract 93-AI-10891, 84 p.

1996

Muir, W. D., S. G. Smith, E. E. Hockersmith, S. Achord, R. F. Absolon, P. A. Ocker, M. B. Eppard, T. E. Ruehle, J. G. Williams, R. N. Iwamoto, J. R. Skalski. 1996. Survival estimates for the passage of the yearling chinook salmon and steelhead through Snake River dams and reservoirs, 1995. Report to the Bonneville Power Administration, Contract E86940119, 88 p. plus appendices.

Williams, J. G., M. H. Gessel, B. P. Sandford, J. J. Vella. 1996. Evaluation of factors affecting juvenile chinook salmon fish guidance efficiency. Report to the U.S. Army Corps of Engineers, Project No. E86910059, 35 p.

1995

Hockersmith, E. E., J. J. Vella, L. C. Stuehrenberg, R. N. Iwamoto, G. A. Swan. 1995. Yakima River radio-telemetry study: Steelhead, 1989-93. Report to the Bonneville Power Administration, Contract DE-AI79-89BP00276, 95 p.

Hockersmith, E. E., J. J. Vella, L. C. Stuehrenberg, R. N. Iwamoto, G. A. Swan. 1995. Yakima River radio-telemetry study: spring chinook salmon,1995. Report to the Bonneville Power Administration, Contract DE-AI79-89BP00276, 63 p. plus appendices.

Muir, W. D., R. N. Iwamoto, C. R. Pasley, B. P. Sandford, P. A. Ocker, T. E. Ruehle. 1995. Relative survival of juvenile chinook salmon after passage through spillbays and the tailrace at Lower Monumental Dam, 1994. Report to the U.S. Army Corps of Engineers, Contract E86940101, 28 p.

Muir, W. D., S. G. Smith, R. N. Iwamoto, D. J. Kamikawa, K. W. McIntyre, E. E. Hockersmith, B. P. Sandford, P. A. Ocker, T. E. Ruehle, J. G. Williams, J. R. Skalski. 1995. Survival estimates for the passage of juvenile salmonids through Snake River dams and reservoirs, 1994. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 187 p.

Swanson, P., T. A. Flagg, J. J. Hard, L. W. Harrell, K. D. Shearer, R. J. Pascho, W. K. Hershberger, K. C. Massee, R. W. Hardy. 1995. Research on Captive Broodstock Technology for Pacific Salmon, Annual Report 1995. Report to the Bonneville Power Administration, Contract 1993BP55064, Project No. 199305600, 220 p. (BPA Report DOE/BP-55064-2)

1994

Iwamoto, R. N., W. D. Muir, B. P. Sandford, K. W. McIntyre, D. A. Frost, J. G. Williams, S. G. Smith, J. R. Skalski. 1994. Survival estimates for the passage of juvenile chinook salmon through Snake River dams and reservoirs. Report to the Bonneville Power Administration, Contract DE-AI79-93BP10891, 140 p.

Prentice, E. F., D. J. Maynard, S. L. Downing, D. A. Frost, M. S. Kellett, D. A. Bruland, P. Sparks-Mcconkey, F. W. Waknitz, R. N. Iwamoto, K. W. McIntyre, N. N. Paasch. 1994. A study to determine the biological feasibility of a new fish tagging system (1990-93). Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 250 p.

1993

Iwamoto, R. N., J. G. Williams. 1993. Juvenile salmonid passage and survival through turbines. Report to the U. S. Army Corps of Engineers, Contract E86920049, 27 p.

1990

Gessel, M. H., D. A. Brege, B. H. Monk, J. G. Williams. 1990. Continued studies to evaluate the juvenile bypass systems at Bonneville Dam - 1989. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Portland District, Seattle, WA, Contract DACW77-88-F-9999, 34 p.

1989

Gessel, M. H., B. H. Monk, D. A. Brege, J. G. Williams. 1989. Fish guidance efficiency studies at Bonneville First and Second Powerhouses, 1988. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Seattle, WA, Delivery Order DACW57-87-F-0322, 36 p.

1988

Gessel, M. H., B. H. Monk, J. G. Williams. 1988. Evaluation of the juvenile fish collection and bypass systems at Bonneville Dam - 1987. Report by Coastal Zone and Estuarine Studies Division, Northwest and Alaska Fisheries Science Center to the U.S. Army Corps of Engineers, Contract DACW57-87-F-0322, 131 p.

Technical Memorandum

2008

Levin, P. S., M. J. Fogarty, G. C. Matlock, M. Ernst. 2008. Integrated ecosystem assessments. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-92, 20 p.

2007

Berntson, E. A., P. S. Levin, P. Moran. 2007. Conservation of North Pacific rockfishes: Ecological genetics and stock structure. Proceedings of the workshop March 2-3, 2004, Seattle, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-80, 80 p.

Brand, E. J., I. C. Kaplan, C. J. Harvey, P. S. Levin, E. A. Fulton, A. J. Hermann, J. C. Field. 2007. A spatially explicit ecosystem model of the California Current's food web and oceanography. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-84, 145 p.

Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2007. Status review of Puget Sound steelhead (Oncorhynchus mykiss). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-81, 117 p.

Hecht, S. A., D. H. Baldwin, C. A. Mebane, T. Hawkes, S. J. Gross, N. L. Scholz. 2007. An overview of sensory effects on juvenile salmonids exposed to dissolved copper: Applying a benchmark concentration approach to evaluate sublethal neurobehavioral toxicity. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-83, 39 p.

2006

Pool, S. S., R. D. Brodeur. 2006. Neustonic mesozooplankton abundance and distribution in the northern California Current, 2000 and 2002. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-74, 76 p.

2005

Williams, J. G., S. G. Smith, R. W. Zabel, W. D. Muir, M. D. Scheuerell, B. P. Sandford, D. M. Marsh, R. A. McNatt, S. Achord. 2005. Effects of the Federal Columbia River Power System on Salmonid Populations. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-63, 150 p.

2004

Berejikian, B.A., and M.J. Ford. 2004. Review of relative fitness of hatchery and natural salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-61, 28 p.

2003

Beechie, T. J., P. Roni, E. A. Steel, E. Quimby. (Eds.) 2003. Ecosystem recovery planning for listed salmon: An integrated assessment approach for salmon habitat. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-58, 183 p.

2002

Waknitz, F. W., T. J. Tynan, C. E. Nash, R. N. Iwamoto, L. G. Rutter. 2002. Review of Potential Impacts of Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon Evolutionarily Significant Units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-53, 83 p. (PDF | HTML)

2001

Nash, C. E., K. M. Brooks, W. T. Fairgrieve, R. N. Iwamoto, C. V. Mahnken, M. B. Rust, M. S. Strom, F. W. Waknitz. 2001. The net-pen salmon farming industry in the Pacific Northwest. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-49, 125 p. (PDF | HTML)

2000

Flagg, T. A., B. A. Berejikian, J. Colt, W. W. Dickhoff, L. W. Harrell, D. J. Maynard, C. E. Nash, M. S. Strom, R. N. Iwamoto, C. V. Mahnken. 2000. Ecological and behavioral impacts of artificial production strategies on the abundance of wild salmon populations. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-41, 92 p. (PDF | HTML)

1999

Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. 1999. Status review of coastal cutthroat trout from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-37, 292 p. (PDF | HTML)

1996

Hard, J. J., R. G. Kope, W. S. Grant, F. W. Waknitz, L. T. Parker, R. S. Waples. 1996. Status review of pink salmon from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-25, 131 p. (PDF | HTML)

1992

Hard, J. J., R. P. Jones Jr., R. S. Waples. 1992. Pacific Salmon and Artificial Propagation Under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-2.

Report

2008

Bromaghin, J. F., R. M. Nielson, and J. J. Hard. 2008. An investigation of the potential effects of selective exploitation on the demography and productivity of Yukon River Chinook Salmon. US Fish and Wildlife Service, Alaska Fisheries Technical Report No. 100, 69 p.

Galbreath, P. F., C. A. Beasley, B. A. Berejikian, R. W. Carmichael, D. E. Fast, M. J. Ford, J. A. Hesse, L. L. McDonald, A. R. Murdoch, C. M. Peven, D. A. Venditti. 2008. Recommendations for Broad Scale Monitoring to Evaluate the Effects of Hatchery Supplementation on the Fitness of Natural Salmon and Steelhead Populations. Final Draft Report of the Ad Hoc Supplementation Monitoring and Evaluation Workgroup. Fish Science Department, Columbia River Inter-Tribal Fish Commission; Quantitative Consultants, Inc.; Northwest Fisheries Science Center, NOAA Fisheries; Oregon Department of Fish and Wildlife; Yakima Klickitat Fisheries Project, Yakima Nation; Department of Fisheries, Nex Perce Tribe; Western Ecosystems Technology, Inc.; Washington Department of Fish and Wildlife; Fisheries Program, Chalan Public Utility District; Idaho Department of Fish and Game.

Levin, P. S., M. J. Fogarty, G. C. Matlock. 2008. Integrated Ecosystem Assessments (White Paper).

2005

Hamel, O. S. 2005. Rebuilding update for the Pacific Ocean Perch. Report to Pacific Fisheries Management Council Portland, OR..

Hamel, O. S. 2005. Status and Future Prospects for the Pacific Ocean Perch Resource in Waters off Washington and Oregon as Assessed in 2005. Report to Pacific Fisheries Management Council Portland, OR..

Hamel, O. S. 2005. Status and Future Prospects for the Shortspine Thornyhead Resource in Waters off Washington,Oregon, and California as Assessed in 2005. Report to Pacific Fisheries Management Council Portland, OR..

Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2005. Status review update for Puget Sound steelhead. Report submitted to NOAA/NMFS Northwest Regional Office, Seattle, Washington, 26 July 2005, 70 p. + 4 appendices.

Roni, P., K. Hanson, T. J. Beechie, G. R. Pess, M. M. Pollock, D. M. Bartley. 2005. Habitat rehabilitation for inland fisheries. Global review of effectiveness and guidance for rehabilitation of freshwater ecosystems. FAO Fisheries Technical Paper. No. 484, Food and Agriculture Organization of the United Nations, 116 p.

2002

Peek, J. M., M. S. Boyce, E. O. Garton, J. J. Hard, L. S. Mills. 2002. Risks involved in current management of elk in Washington. Final report to Washington Department of Fish and Wildlife and Washington Wildlife Commission, Olympia, Washington, 99 p.

2001

Fuss, H., C. Sharpe, P. Hulett, M. J. Ford, J. J. Hard, E. LaHood. 2001. Differences in natural production between hatchery and wild coho salmon in Minter Creek, Washington. Annual report to the Hatchery Science Review Group, June, 2001..

1999

Eppard, M. B., S. G. Smith, B. P. Sandford, G. A. Axel, J. G. Williams, R. D. McDonald. 1999. Survival estimates for the passage of yearling fall chinook salmon through Rocky Reach and Rock Island Dams, 1998. Report to, Public Utility District No. 1 of Chelan County, 62 p.

1995

Stuehrenberg, L. C., G. A. Swan, L. K. Timme, P. A. Ocker, M. B. Eppard, R. N. Iwamoto, B. L. Iverson, B. P. Sandford. 1995. Migrational characteristics of adult spring, summer, and fall chinook salmon passing through reservoirs and dams of the Mid-Columbia River. Report to Mid-Columbia River Public Utility Districts, 132 p.

1994

Swan, G. A., M. B. Eppard, P. A. Ocker, R. N. Iwamoto, B. P. Sandford. 1994. Biological evluation of the prototype gatewell lift-tank system at lower Granite Dam, 1994. Coastal Zone and Estuarine Studies Division, Northwest Fisheries Science Center, Seattle, WA, 41 p.

Swan, G. A., L. K. Timme, R. N. Iwamoto, L. C. Stuehrenberg, E. E. Hockersmith, B. L. Iverson, B. P. Sandford. 1994. Wells Dam radio-telemetry study, 1992. Public Utility District No. 1 of Douglas County, 70 p.

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