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Click the links to go to documents. Click the green arrow  to see metadata.
2009
Berejikian, B. A., D. M. Van Doornik, J. A. Scheurer, R. Bush. 2009. Reproductive behavior and relative reproductive success of natural - and - hatchery - origin Hood Canal summer chum slamon (Oncorhynchus keta). Canadian Journal of Fisheries and Aquatic Sciences, 66:781789.
Phillips, A. J., R. D. Brodeur, A. V. Suntsov. 2009. Micronekton community structure in the epipelagic zone of the northern California Current upwelling system. Progress in Oceanography, 80:74-92.
Tatara, C. P., S. Riley, J. A. Scheurer. 2009. Growth, survival, and habitat use of naturally reared and hatchery steelhead fry in streams: effects of an enriched hatchery rearing environment. Transactions of the American Fisheries Society, 138(3):447.
2009. Proceedings of the 2008 Tri-National Sardine Forum. Proceedings, Astoria, Oregon, United States of America, 96 p.
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2008
Emmett, R. L., G. K. Krutzikowsky. 2008. Nocturnal Feeding of Pacific Hake (Merluccius productus) and Jack Mackerel (Trachurus symmetricus) off the Mouth of the Columbia River, 1998-2004. Transactions of the American Fisheries Society.
Jacobson, K.C., D. Teel, D.M. VanDoornik and E. Casillas. 2008. Parasite associated mortality of juvenile Pacific salmon caused by the trematode Nanophyetus salmincola during early marine residence. Marine Ecology Progress Series 354:235-244.
Parnel, M. M., R. L. Emmett, R. D. Brodeur. 2008. Ichthyoplankton Community in the Columbia River Plume off Oregon: Effects of Fluctuating Oceanographic Conditions. Fishery Bulletin, 106:161-173.
Parnel, M. M. R. L. Emmett, and R. D. Brodeur. 2008. Ichthyoplankton community in the Columbia River plume off Oregon: Effects of fluctuating oceanographic conditions. Fish. Bull. 106:161173
Tatara, C. P., S. Riley, J. A. Scheurer. 2008. Environmental enrichment in steelhead (Oncorhynchus mykiss) hatcheries: field evaluation of aggression, foraging and territoriality in natural and hatchery fry. Canadian Journal of Fisheries and Aquatic Sciences, 65(4):744-753.
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2007
Emmett, R. L., and D. B. Sampson. 2007 The relationships between predatory fish, forage fishes, and juvenile salmonid marine survival off the Columbia River: A simple trophic model analysis. CalCOFI 48: 92-105.
Scheurer, J. A., B. A. Berejikian, F. P. Thrower, E. R. Ammann, T. A. Flagg. 2007. Innate predator recognition and fright response in related populations of Oncorhynchus mykiss under different predation pressure. Journal of Fish Biology, 70:1057-1069.
Van Doornik, D. M., D. J. Teel, D. R. Kuligowski, C. A. Morgan, and E. Casillas. 2007. Genetic analyses provide insight into the early ocean stock distribution and survival of juvenile coho salmon off the coasts of Washington and Oregon. North American Journal of Fisheries Management 27:220-237.
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2006
Emmett, R. L., G. K. Krutzikowsky, P. J. Bentley. 2006. Abundance and distribution of pelagic piscivorous fishes in the Columbia River plume during spring/early summer 1998-2003: Relationship to oceanographic conditions, forage fishes, and juvenile salmonids. Progress in Oceanography, 68:1-26.
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2005
Brodeur, R. D., J. P. Fisher, R. L. Emmett, C. A. Morgan, E. Casillas. 2005. Species composition and community structure of pelagic nekton off Oregon and Washington under variable oceanographic conditions. Marine Ecology Progress Series.
De Robertis, A., C. A. Morgan, R. Schabetsberger, R. W. Zabel, R. D. Brodeur, R. L. Emmett, C. M. Knight, G. K. Krutzikowsky, E. Casillas. 2005. Columbia River plume fronts. II Distribution, abundance and feeding ecology of juvenile salmon. Marine Ecology Progress Series, 299:33-44.
Emmett, R. L., R. D. Brodeur, T. W. Miller, S. S. Pool, P. J. Bentley, G. K. Krutzikowsky, J. McCrae. 2005.  Pacific Sardine (Sardinops sagax) Abundance, Distribution and Ecological Relationships in the Pacific Northwest. California Cooperative Oceanic Fisheries Investigations Reports, 46:122-143.
Keister, J. E., J. B. Johnson, C. A. Morgan, W. T. Peterson. 2005. Biological indicators of the timing and direction of warm-water advection during the 1997/1998 El Niqo off the central Oregon coast, USA. Marine Ecology Progress Series, 295:43-48.
Krutzikowsky, G. K., R. L. Emmett. 2005. Diel differences in surface trawl fish catches off Oregon and Washington. Fisheries Research, 71:365-371.
Morgan, C. A., A. De Robertis, R. W. Zabel. 2005. Columbia River plume fronts. I. Hydrography, zooplankton distribution, and community composition. Marine Ecology Progress Series, (299)19-31.
Muir, W. D., R. L. Emmett, R. A. McNatt. 2005. Evaluation of the relationship among time of ocean entry, physical and biological characteristics of the estuary and plume environment, and adult return rates, 2004. Report by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, Contract W66QKZ20374368, vi, 19 p.
Riley, S., C. P. Tatara, J. A. Scheurer. 2005. Aggression and feeding of hatchery-reared and naturally reared steelhead (Oncorhynchus mykiss) fry in a laboratory flume and a comparison with observations in natural streams. Canadian Journal of Fisheries and Aquatic Sciences, 62:1400-1409.
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2004
Arkoosh, M. R., E. R. Clemons, A. N. Kagley, C. L. Stafford, A. Glass, K. C. Jacobson, P. Reno, M. S. Myers, E. Casillas, L. L. Johnson, F. Lodge, T. K. Collier. 2004. Survey of pathogens in juvenile salmon onchorhynchus spp. migrating through Pacific Northwest estuaries. Journal of Aquatic Animal Health, 16:186-196.
Berejikian, B. A., J. A. Scheurer, J. Lee, D. M. Van Doornik, E. Volk, T. Johnson. 2004. Evaluation of conservation hatchery rearing and release strategies for steelhead recovery in the Hamma Hamma River. Annual Report to the Hatchery Scientific Review Group, IAC Grant #01-042, 33 p.
Bosley, K. L., J. W. Lavelle, R. D. Brodeur, W. W. Wakefield, R. L. Emmett, E. T. Baker, K. M. Rehmke. 2004. Biological and Physical Processes in and around Astoria Submarine Canyon, Oregon, U.S.A. Journal of Marine Systems, 50:21-37.
Brodeur, R. D., J. P. Fisher, D. J. Teel, R. L. Emmett, E. Casillas, T. W. Miller. 2004. Juvenile salmonid distribution, growth, condition, origin, environmental and species associations in the Northern California Current. Fishery Bulletin, 102:25-46.
Emmett, R. L., R. D. Brodeur, P. M. Orton. 2004. The vertical distribution of juvenile salmon (Oncorhynchus spp.) and associated fishes in the Columbia River plume. Fisheries Oceanography, 13:392-402.
Jacobson, K. C., R. E. Baldwin, D. J. Teel. 2004. Parasite community composition: Insights on the ecology and migration of juvenile salmon. Pages 49-51 in Workshop on Application of Stock Identification in defining Marine Distribution and Migration of Salmon. North Pacific Anadromous Fish Commission, Vancouver, BC.
Muir, W. D., R. L. Emmett. 2004. Evaluation of the relationship among time of ocean entry, physical and biological characteristics of the estuary and plume environment, and adult return rates, 2002. Report by Research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland District, vi, 14 p.
Muir, W. D., R. L. Emmett, R. A. McNatt. 2004. Evaluation of the relationship among time of ocean entry, physical and biological characteristics of the estuary and plume environment, and adult return rates, 2003. Report of research by Fish Ecology Division, Northwest Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration to the U.S. Army Corps of Engineers, Portland, OR, v, 14 p p.
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2003
Berejikian, B. A., J. A. Scheurer, J. Lee, D. M. Van Doornik, E. Volk, T. Johnson, R. Endicott. 2003. Evaluation of conservation hatchery rearing and release strategies for steelhead recovery in the Hamma Hamma River. Annual Report to the Hatchery Scientific Review Group, IAC Grant #01-042, 25 p.
Brodeur, R. D., J. P. Fisher, Y. Ueno, K. Nagasawa, W. G. Pearcy. 2003. An east-west comparison of the Transition Zone coastal pelagic nekton of the North Pacific Ocean. Journal of Oceanography, 59:415-434.
Jacobson, K. C., M. R. Arkoosh, A. N. Kagley, E. R. Clemons, T. K. Collier, E. Casillas. 2003. Cumulative effects of natural and anthropogenic stress on immune function and disease resistance in juvenile chinook salmon. Journal of Aquatic Animal Health, 15:1-12.
Morgan, C. A., W. T. Peterson, R. L. Emmett. 2003. Onshore-offshore variations in copepod community structure off the Oregon coast during the summer upwelling season. Marine Ecology Progress Series, 249:223-236.
Schabetsberger, R., C. A. Morgan, R. D. Brodeur, C. L. Potts, W. T. Peterson, R. L. Emmett. 2003. Prey selectivity and diel feeding chronology of juvenile chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the Columbia River plume. Fisheries Oceanography, 12:523-540.
Scheurer, J. A., K. D. Fausch, K. R. Bestgen. 2003. Multiscale processes regulate brassy minnow persistence in a great plains river. Transactions of the American Fisheries Society, 132:840-855.
Scheurer, J. A., K. R. Bestgen, K. D. Fausch. 2003. Resolving Taxonomy and Historic Distribution for Conservation of Rare Great Plains Fishes: Hybognathus (Teleostei: Cyprinidae) in Eastern Colorado Basins. Copeia, 2003:1-12.
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2002
Emmett, R. L., S. A. Hinton, D. J. Logan, G. T. McCabe Jr. 2002. Introduction of a Siberian Freshwater Shrimp to Western North America. Biological Invasions, 4:447-450.
Peterson, W. T., J. Gomez-Gutierrez, C. A. Morgan. 2002. Cross-shelf variation in calanoid copepod production during summer 1996 along the Oregon coast, USA. Marine Biology, 141:353-365.
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2001
Emmett, R. L., P. J. Bentley, G. K. Krutzikowsky. 2001. Ecology of marine predatory and prey fishes off the Columbia River, 1998 and 1999. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-51, 108 p. (PDF | HTML)
Sorte, C. J., W. T. Peterson, C. A. Morgan, R. L. Emmett. 2001. Larval dynamics of the sand crab, Emerita analoga, off the central Oregon coast during a strong El Nino period. Journal of Plankton Research, 23:939-944.
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2000
Brodeur, R. D., P. J. Bentley, R. L. Emmett, T. W. Miller, W. T. Peterson. 2000. Sardines in the ecosystem of the Pacific Northwest. Pages 90-94 in Proc. Sardine 2000 Symposium. Pacific States Marine Fish. Comm.
Emmett, R. L., R. Llanso, J. A. Newton, R. Thom, M. Hornberger, C. A. Morgan, C. Levings, A. Copping, P. Fishman. 2000. Geographic signatures of North American west coast estuaries. Estuaries, 23(6):765-792.
Emmett, R. L., R. D. Brodeur. 2000. Recent changes in the pelagic nekton community off Oregon and Washington in relation to some physical oceanographic conditions. North Pacific Anadromous Fish Commission Bulletin, 2:11-20.
Fisher, J. P., M. S. Myers. 2000. Fish necropsy. Pages 543-556 in Ostrander, G. K. (Ed.) The Handbook of Experimental Animals: The Laboratory Fish. Academic Press, London.
Hinton, S. A., R. L. Emmett. 2000. Biological surveys of the Trestle Bay Enhancement Project 1994 and 1996-1997. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-39, 72 p. (PDF | HTML)
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1999
Kelly, N. M., D. Field, F. A. Cross, R. L. Emmett. 1999. Remote sensing of forest-clearing effects on essential fish habitat of Pacific salmon. American Fisheries Society Symposium, 22:252-267.
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1998
Dawley, E. M., L. G. Gilbreath, R. D. Ledgerwood, P. J. Bentley, B. P. Sandford. 1998. Effects of bypass systems at Bonneville Dam Second Powerhouse on downstream migrant salmon and steelhead; direct capture assessment, 1990-1992. Final report of research by Fish Ecology Division, Northwest Fisheries Science Center to the U.S. Army Corps of Engineers, Contract DACW57-85-H-0001, 53 p. plus appendices.
McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett. 1998. Benthic invertebrates and sediment characteristics in a shallow navigation channel of the lower Columbia River, before and after dredging. Northwest Science, 72:116-126.
McCain, B. B., A. D. MacCall, R. L. Emmett, R. D. Brodeur. 1998. Marine Resources: Pacific Coast Region. Pages 814-823 in Mac, M. J., P. A. Opler, C. E. Puckett Haecker, P. D. Doran. (Eds.) Status and Trends of The Nation's Biological Resources. Vol. 2. U. S. Department of the Interior, U. S. Geological Survey, Reston, VA.
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1997
Emmett, R. L., M. H. Schiewe. (Eds.) 1997. Estuarine and ocean survival of Northeastern Pacific salmon: Proceedings of the workshop. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-29, 313 p. (PDF | HTML)
Genovese, P. V., R. L. Emmett. 1997. Desktop geographic information systems for salmonid resources in the Columbia River Basin. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-34, 32 p.
Lawson, P. W. 1997. Interannual variability in growth and survival of chinook and coho salmon. In Emmett, R. L., M. H. Schiewe. (Eds.) Estuarine and ocean survival of Northeastern Pacific salmon: Proceedings of the workshop. U.S. Dept. Commer., NOAA Tech. Memo. NMFS-NWFSC-219.
McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett, B. P. Sandford. 1997. Benthic invertebrates and sediment characteristics in main channel habitats in the Lower Columbia River. Northwest Science, 71(1):45-55.
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1996
Bentley, P. J., R. L. Emmett, N. C. Lo, H. G. Moser. 1996. Egg production of Pacific sardine (Sardinops sagax) off Oregon in 1994. California Cooperative Oceanic Fisheries Investigations Reports, 37:193-200.
Hinton, S. A., R. L. Emmett. 1996. Benthic infauna and sediment characteristics offshore from the Columbia River, August 1994. Report to the U.S. Army Corps of Engineers, Contract E96930048, 43 p.
McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett. 1996. Benthic invertebrates and sediment characteristics in Wahkiakum County Ferry Channel, Washington, before and after dredging. Report to the U.S. Army Corps of Engineers, Contract 96930051, 32 p.
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1995
Emmett, R. L., S. A. Hinton. 1995. Benthic infauna and sediment characteristics offshore from the Columbia River, July 1993. Report to the U.S. Army Corps of Engineers, Contract E96930048, 56 p.
Hinton, S. A., G. T. McCabe Jr., R. L. Emmett. 1995. In-water restoration between Miller Sands and Pillar Rock Island, Columbia River: Environmental surveys, 1992-93. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-23, 47 p. (PDF | HTML)
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1994
Emmett, R. L., P. J. Bentley. 1994. Bottom trawling in Half Moon Bay, Grays Harbor, Washington, 12 april 1994. Report to the U.S. Army Corps of Engineers, Contract E86-94-3084, 16 p.
Hinton, S. A., R. L. Emmett. 1994. Benthic infauna, sediment, and fish offshore from the Columbia River, July 1992. Coastal Zone and Estuarine Studies Division, Northwest Fisheries Science Center, Seattle, WA, 60 p.
Hinton, S. A., R. L. Emmett. 1994. Demersal fishes, benthic and epibenthic invertebrates, and sediment characteristics at and adjacent to offshore disposal Site F, Coos Bay, Oregon, April and October 1992. Report to the U.S. Army Corps of Engineers, Contract E96920027 and E96920028, 90 p.
Hinton, S. A., R. L. Emmett. 1994. Juvenile salmonid stranding in the lower Columbia River, 1992 and 1993. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-20, 48 p.
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1993
Furota, T., R. L. Emmett. 1993. Seasonal changes in the intertidal and subtidal macrobenthic invertebrate community structure in Baker Bay, Lower Columbia River estuary. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-5, 68 p.
Gilbreath, L. G., E. M. Dawley, R. D. Ledgerwood, P. J. Bentley, S. J. Grabowski. 1993. Relative survival of subyearling chinook salmon that have passed Bonneville Dam via the spillway or second powerhouse turbines or bypass system: adult recoveries through 1991. Report to the U.S. Army Corps of Engineers, Contract E96910013, 26 p.
Hinton, S. A., R. L. Emmett. 1993. Demersal fishes, benthic and epibenthic invertebrates, and sediment characteristics at and adjacent to offshore disposal Site F, Coos Bay, Oregon, April 1992. Report to the U.S. Army Corps of Engineers, Contract E96920027 and E96920028, 54 p.
Ledgerwood, R. D., E. M. Dawley, P. J. Bentley, L. G. Gilbreath, T. P. Poe, H. L. HANSEN. 1993. Effectiveness of predator removal for protecting juvenile fall chinook salmon released from Bonneville Hatchery, 1991. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-9, 63 p.
McCabe, G. T. Jr., S. A. Hinton, R. L. Emmett. 1993. Benthic and epibenthic invertebrates, fishes, and sediments at and adjacent to a proposed new site for Area D, an in-water dredged-material disposal site in the Lower Columbia River, 1991. Final Report to the U.S. Army Corps of Engineers, Contract E96910017 and E96910040, 42 p.
McCabe, G. T. Jr., R. L. Emmett, S. A. Hinton. 1993. Feeding ecology of juvenile white sturgeon (Acipenser transmontanus) in the lower Columbia River. Northwest Science, 67(3):170-180.
McCabe, G. T. Jr., R. L. Emmett, S. A. Hinton. 1993. In-water restoration between Miller Sands and Pillar Rock Island, Columbia River: Biological surveys, 1992. Report to National Marine Fisheries Service, Habitat Research & Restoration Division 60 p.
Siipola, M. D., R. L. Emmett, S. A. Hinton. 1993. Tongue point monitoring program, 1989-1992. Report to the U.S. Army Corps of Engineers, 63 p. plus appendices (72 p.).
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