Journal Article

In press

Busch, D. S., M. J. O'Donnell. In press. Predicting the consequences of ocean acidification on marine organisms.

Leslie, H. A., E. Goldman, K. L. McLeod, L. Sievanen, H. Balasubramanian, A. Feuerstein, N. Knowlton, K. Lee, R. Pollnac, J. F. Samhouri. In press. Good stories and good science can go hand-in-hand. Conservation Biology.

McElhany, P., K. A. Avery, N. J. Yoder, C. Busack, B. Thompson. In press. Dealing with Uncertainty in Ecosystem Models: Lessons from a Complex Salmon Model. Ecological Applications.

Plummer, M., P. S. Levin. In press. Integrated Ecosystem Assessments and Ecosystem-based Management: A Socio-ecological Perspective. The Sea, 16.

Shelton, A. O., D. Kinzey, C. Reiss, S. Munch, G. Watters, M. Mangel. In press. Among-year variation in growth of Antarctic krill (Euphausia superba) based on length-frequency data. Marine Ecology Progress Series.

Shelton, A. O., W. H. Satterthwaite, M. Beakes, S. Munch, S. M. Sogard, M. Mangel. In press. Separating intrinsic and environmental contributions to growth and their population consequences. American Naturalist.

Steel, E. A., P. McElhany, N. J. Yoder, M. D. Purser, K. Malone, B. E. Thompsen, K. A. Avery, D. Jensen, G. Blair, C. Busack, M. D. Bowen, J. Hubble, T. Kantz. In press. Making the best use of modeled data: Multiple approaches to sensitivity analysis of a fish-habitat model. Fisheries.

Tolimieri, N., J. F. Samhouri, V. Simon, B. E. Feist, P. S. Levin. In press. Linking the trophic fingerprint of groundfishes to ecosystem structure and function in the California Current. Ecosystems.

Zabel, R. W., P. S. Levin, N. Tolimieri, N. Mantua. In press. Interactions between climate and population density in the episodic recruitment of bocaccio, Sebastes paucispinis, a Pacific rockfish. Fisheries Oceanography, 20(4):294304. doi:doi:10.1111/j.1365-2419.2011.00584.x

2013

Anderson, L. E., S. T. Lee, P. S. Levin. 2013. Costs of Delaying Conservation: Regulations and the Recreational Values of Rockfish and Co-occurring Species. Land Economics, 89(2):371-385.

Busch, D. S., M. B. Sheer, K. M. Burnett, P. McElhany, T. Cooney. 2013. Landscape-level model to predict spawning habitat for Lower Columbia fall Chinook salmon (Oncorhynchus tshawytscha). River Research and Applications, 29(3):297-312. doi:10.1002/rra.1597

Carey, M. P., P. S. Levin, H. M. Townsend, T. J. Minello, G. R. Sutton, T. Francis, C. J. Harvey, J. E. Toft, K. K. Arkema, J. Burke, C. Kim, A. Guerry, M. Plummer, G. Spiridonov, M. H. Ruckelshaus. 2013. Characterizing coastal food webs with qualitative links to bridge the gap between the theory and practice of ecosystem-based management.

2012

Ainsworth, C. H., H. Morzaria-Luna, I. C. Kaplan, P. S. Levin, E. A. Fulton, R. Cudney-Bueno, P. Turk-Boyer, J. Torre, G. D. Danemann, T. Pfister. 2012. New fisheries regulations must be accompanied by effective enforcement: a Gulf of California case study. Marine Policy.

Francis, T. B., M. D. Scheuerell, P. S. Levin, R. D. Brodeur, N. Tolimieri, J. J. Ruzicka, W. T. Peterson. 2012. Climate shifts the interaction web of a marine plankton community. Global Change Biology, 18(8):24982508. doi:10.1111/j.1365-2486.2012.02702.x

Anne D. Guerry, Mary H. Ruckelshaus, Katie K. Arkema, Joey R. Bernhardt, Gregory Guannel,
Choong-Ki Kim, Matthew Marsik, Michael Papenfus, Jodie E. Toft, Gregory Verutes, Spencer A. Wood, Michael Beck, Francis Chan, Kai M.A. Chan, Guy Gelfenbaum, Barry D. Gold, Benjamin S. Halpern, William B. Labiosa, Sarah E. Lester, Phil S. Levin, Melanie McField, Malin L. Pinsky, Mark Plummer, Stephen Polasky, Peter Ruggiero, David A. Sutherland, Heather Tallis, Andrew Day & Jennifer Spencer (2012): Modeling benefits from nature: using ecosystem services to inform coastal and marine spatial planning, International Journal of Biodiversity Science, Ecosystem Services & Management, DOI:10.1080/21513732.2011.647835

Halpern, B. S., K. L. McLeod, C. Longo, D. Hardy, J. F. Samhouri, S. K. Katona, K. Kleisner, S. E. Lester, J. O'Leary, M. Ranelletti, A. A. Rosenberg, C. Scarborough, E. R. Selig, B. D. Best, D. R. Brumbaugh, F. S. Chapin, L. B. Crowder, K. L. Daly, S. C. Doney, C. Elfes, M. J. Fogarty, S. D. Gaines, K. I. Jacobsen, L. B. Karrer, H. Leslie, E. Neeley, D. Pauly, S. Polasky, B. Ris. 2012. An index to assess the health and benefits of the global ocean. Nature, 488:615-620. doi:10.1038/nature11397

Harvey, C. J., G. D. Williams, P. S. Levin. 2012. Food web structure and trophic controls in central Puget Sound. Estuaries and Coasts, 35:821-838. doi:10.1007/s12237-012-9483-1

Kim C-K, Toft JE, Papenfus M, Verutes G, Guerry AD, et al. (2012) Catching the Right Wave: Evaluating Wave Energy Resources and Potential Compatibility with Existing Marine and Coastal Uses. PLoS ONE 7(11): e47598. doi:10.1371/journal.pone.0047598

Levin, P. S., P. Horne, K. Andrews, G. Williams. 2012. A multi-scale empirical movement model for sixgill sharks in Puget Sound: combining observed and unobserved behavior. Current Zoology, 58(1):103-115.

Morzaria Luna, H. N., C. H. Ainsworth, I. C. Kaplan, P. S. Levin, E. A. Fulton. 2012. Trade-offs between fisheries and conservation of the critically endangered vaquita (Phocoena sinus). PLoS ONE, 7(8):e42917. doi:10.1371/journal.pone.0042917

Samhouri, J. F., P. S. Levin. 2012. Linking land- and sea-based activities to risk in coastal ecosystems. Biological Conservation. Biological Conservation, 145:118-129. doi:10.1016/j.biocon.2011.10.021

Samhouri, J. F., S. E. Lester, E. R. Selig, B. S. Halpern, M. J. Fogarty, C. Longo, K. L. McLeod. 2012. Sea sick? Setting targets to assess ocean health and ecosystem services. Ecosphere, 3(5):41. doi:http://dx.doi.org/10.1890/ES11-00366.1

Steel, E. A., D. W. Jensen, K. M. Burnett, K. Christiansen, J. C. Firman, B. E. Feist, K. J. Anlauf, D. P. Larsen. 2012. Landscape characteristics and coho salmon (Oncorhynchus kisutch) distributions: Explaining abundance versus occupancy. Canadian Journal of Fisheries and Aquatic Sciences, 69(3):457-468. doi:10.1139/f2011-161

Warren, D. R., M. M. McClure. 2012. Quantifying salmon-derived nutrient loads from the mortality of hatchery-origin juvenile Chinook salmon in the Snake River basin. Transactions of the American Fisheries Society.

Williams, G. D., Andrews, K. S., Katz, S. L., Moser, M. L., Tolimieri, N., Farrer, D. A. and Levin, P. S. (2012), Scale and pattern of broadnose sevengill shark Notorynchus cepedianus movement in estuarine embayments. Journal of Fish Biology, 80: 1380–1400. doi: 10.1111/j.1095-8649.2011.03179.x

2011

Ainsworth, C. H., H. N. Morzaria Luna, I. C. Kaplan, P. S. Levin, E. A. Fulton. 2011. Full compliance with existing harvest regulations yields ecological benefits: a Northern Gulf of California case study. Journal of Applied Ecology, 49(1):63-72.

Ainsworth, C., J.F. Samhouri, D.S. Busch, W.L. Cheung, J.P. Dunne, T.A. Okey. 2011. Potential impacts of climate change on Northeast Pacific marine food webs and fisheries. ICES Journal of Marine Science 68: 1217-1229.

Andrews, K. S., N. Tolimieri, G. D. Williams, J. F. Samhouri, C. J. Harvey, P. S. Levin. 2011. Comparison of fine-scale acoustic monitoring systems using home range size of a demersal fish. Marine Biology, 158:2377-2387. doi:10.1007/s00227-011-1724-5

Andrews, K. S., B. R. Beckman, A. H. Beaudreau, D. A. Larsen, G. D. Williams, P. S. Levin. 2011. Suitability of insulin-like growth factor 1 (IGF1) as a measure of growth in lingcod. Marine and Coastal Fisheries: Dynamics, Management, and Ecosystem Science, 3(1):250-260. doi:10.1080/19425120.2011.588921

Anlauf, K. J., D. W. Jensen, E. A. Steel, K. M. Burnett, K. Christiansen, J. C. Firman, B. E. Feist, D. P. Larsen. 2011. Explaining spatial variability in stream habitats using both natural and management-influenced landscape predictors. Aquatic Conservation: Marine and Freshwater Ecosystems, 21(7):704-714. doi:10.1002/aqc.1221

Beaudreau, A. H., P. S. Levin, K. C. Norman. 2011. Using folk taxonomies to understand stakeholder perceptions for species conservation. Conservation Letters, 4:451-463.

Botsford, L. W., J. W. White, M. D. Holland, J. F. Samhouri, A. Hastings. 2011. Importance of age structure in models of the response of upper tropic levels to fishing and climate change. ICES Journal of Marine Science, 68(6):1270-1283. doi:10.1093/icesjms/fsr042

Buhle, E., B. E. Feist, R. Hilborn. 2011. Population dynamics and control of invasive Spartina alterniflora: inference and forecasting under uncertainty. Ecological Applications.

Feist BE, Buhle ER, Arnold P, Davis JW, Scholz NL (2011) Landscape Ecotoxicology of Coho Salmon Spawner Mortality in Urban Streams. PLoS ONE 6(8): e23424. doi:10.1371/journal.pone.0023424

Fullerton, A. H., S. T. Lindley, G. R. Pess, B. E. Feist, E. A. Steel, P. McElhany. 2011. Human influence on the spatial structure of threatened Pacific salmon metapopulations. Conservation Biology. doi:10.1111/j.1523-1739.2011.01718.x

Huber, Harriet R., Jorgensen, Jeffrey C., Butler, Virginia L., Baker, Greg, and Stevens, Rebecca. 2011. Can salmonids (Oncorhynchus spp.) be identified to species using vertebral morphometrics? Journal of Archaeological Science 38:136-146, doi:10.1016/j.jas.2010.08.020

James, C. A., J. Kershner, J. F. Samhouri, S. M. O'Neill, P. S. Levin. 2011. A Hierarchical Approach for Evaluating Water Quality Indicators for Use in Ecosystem-based Management. PLoS ONE, 6(10):e25248. doi:10.1371/journal.pone.0025248

Kershner, J., J.F. Samhouri, C.A. James, and P.S. Levin. 2011. Selecting indicator portfolios for marine species and food webs: a Puget Sound case study. PLoS One 6(10): e25248.

Samhouri, J. F., P. S. Levin, C. A. James, J. Kershner, G. Williams. 2011. Using Existing Scientific Capacity to Set Targets for Ecosystem-based Management: A Puget Sound Case Study. Marine Policy, 35:508-518. doi:10.1016/j.marpol.2010.12.002

Ward, E. J., P. S. Levin, M. M. Lance, S. J. Jeffries, A. Acevedo-Gutierrez. 2011. Integrating diet and movement data to identify hot spots of predation risk and areas of conservation concern for endangered species. Conservation Letters, 5(1):37-47. doi:DOI: 10.1111/j.1755-263X.2011.00210.x

White, J. W., J. F. Samhouri. 2011. Oceanographic coupling across three trophic levels shapes source-sink dynamics in marine metacommunities. Oikos, 120(8):1151-1164. doi:10.1111/j.1600-0706.2010.19226.x

Williams, G. D., K. S. Andrews, D. A. Farrer, G. G. Bargmann, P. S. Levin. 2011. Occurrence and Biological Characteristics Of Broadnose Sevengill Sharks (Notorynchus cepedianus) in Pacific Northwest Coastal Estuaries. Environmental Biology of Fishes, 91:379-388.

2010

Fullerton, A. H., E. A. Steel, Y. Caras, I. A. Lange. 2010. Effects of Spatial Pattern and Economic Uncertainties on Freshwater Habitat Restoration Planning: a Simulation Exercise. Restoration Ecology, 18(S2):354-369. doi:10.1111/j.1526-100X.2009.00620.x

Fullerton, A. H., D. Jensen, E. A. Steel, D. Miller, P. McElhany. 2010. How Certain Are Salmon Recovery Forecasts? A Watershed-Scale Sensitivity Analysis. Environmental Modeling and Assessment, 15(1):13-26. doi:10.1007/s10666-008-9185-z

Good, T. P., J. A. June, M. A. Etnier, G. Broadhurst. 2010. Derelict Fishing Nets In Puget Sound And The Northwest Straits: Patterns And Threats To Marine Fauna. Marine Pollution Bulletin, 60(1):39-50.

Levin, P. S., J. F. Samhouri, M. Damon. 2010. Developing Meaningful Marine Ecosystem Indicators In The Face Of A Changing Climate. Stanford Journal of Law, Science and Policy, 2:37-48.

Moore, J. W., M. M. McClure, L. A. Rogers, D. E. Schindler. 2010. Synchronization of a portfolio of salmon populations. Conservation Letters, 3(5):340-348.

Samhouri, J.F., P.S. Levin, C.H. Ainsworth. 2010. Identifying thresholds for ecosystem-based management. PLoS One 5: e8907.

Waples, R. S., D. W. Jensen, and M. M. McClure. 2010. Eco-evolutionary dynamics: Fluctuations in population growth rate reduce effective population size in Chinook salmon. Ecology 91:902-914

2009

Fullerton, A. H., A. Steel, Y. Caras, M. B. Sheer, P. Olson, J. Kaje. 2009. Putting watershed restoration in context: alternative future scenarios influence management outcomes. Ecological Applications, 19(1):218-235.

Good, T. P., J. A. June, M. A. Etnier, G. Broadhurst. 2009. Ghosts Of The Salish Sea: Threats To Marine Birds In Puget Sound And The Northwest Straits From Derelict Fishing Gear. Marine Ornithology, 37:67-76.

Honea, J., J. Jorgensen, M. McClure, T. Cooney, K. Engie, & R. Hilborn. 2009. Evaluating habitat effects on population status: Influence of habitat restoration on spring-run Chinook salmon. Freshwater Biology 54:1576-1592.

Jorgensen, J., J. Honea, M. McClure, T. Cooney, D. Holzer, & K. Engie. 2009. Linking landscape-level change to habitat quality: an evaluation of restoration actions on freshwater habitat of spring-run Chinook salmon. Freshwater Biology 54:1560-1575.

Naiman, R. J., J. M. Helfield, K. K. Bartz, D. C. Drake, J. M. Honea. 2009. Pacific Salmon, Marine-Derived Nutrients and the Characteristics of Aquatic and Riparian Ecosystems. American Fisheries Society Symposium, 69:395-425.

Samhouri, J.F., P.S. Levin, C.J. Harvey. 2009. Quantitative evaluation of marine ecosystem indicator performance using food web models. Ecosystems 12: 1283-1298.

Steel, E. A., A. H. Fullerton, Y. Caras, M. B. Sheer, P. Olson, D. Jensen, J. Burke, M. T. Maher, P. McElhany. 2009. A spatially explicit decision support system for managing wide-ranging species. Ecology and Society, 13(2):50.

Warren, D. R., M. M. Mineau, C. E. Kraft, E. Ward. 2009. Relating Fish Biomass to Habitat and Chemistry in Headwater streams of the Northeastern United States.

2008

Angilletta Jr., M. J., E. A. Steel, K. K. Bartz, J. G. Kingsolver, M. D. Scheuerell, B. R. Beckman, L. G. Crozier. 2008. Big dams and salmon evolution: changes in thermal regimes and their potential evolutionary consequences. Evolutionary Applications, 1(2):286-299.

Ford, M.J., J. J. Hard, B. Boelts, E. LaHood, and J. Miller. 2008. Estimates of natural selection in a salmon population in captive and natural environments. Conservation Biology, 22:783-794.

Good, T. P., J. R. Davies, B. J. Burke, M. H. Ruckelshaus. 2008. Incorporating catastrophic risk assessments into setting conservation goals for Pacific salmon. Ecological Applications 18(1): 246-257.

LaHood ES, Miller JJ, Apland C, Ford MJ (2008) A Rapid, Ethanol-Free Fish Tissue Collection Method for Molecular Genetic Analyses. Transactions of the American Fisheries Society: Vol. 137, No. 4 pp. 11041107

McClure, M. M., F. Utter, C. Baldwin, R. W. Carmichael, P. Hassemer, P. Howell, P. Spruell, T. Cooney, H. Schaller, C. Petrosky. 2008. Evolutionary Effects of Alternative Artificial Propagation Programs: Implications for the Viability of Endgered Anadromous Salmonids. Evolutionary Applications.

McClure, M. M., S. M. Carlson, T. J. Beechie, G. R. Pess, J. C. Jorgensen, S. M. Sogard, S. E. Sultan, D. M. Holzer, J. Travis, B. L. Sanderson, M. E. Power, R. W. Carmichael. 2008. Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications.

Pess, G. R., M. L. McHenry, T. J. Beechie, and J. Davies. 2008. Biological impacts of the Elwha River dams and potential salmonid responses to dam removal. Northwest Science 82 (Special Issue):72-90.

2007

Battin, J., M. W. Wiley, M. H. Ruckelshaus, R. N. Palmer, E. Korb, K. K. Bartz, H. Imaki. 2007. Projected impacts of future climate change on salmon habitat restoration actions in a Puget Sound river. Proceedings of the National Academy of Sciences, 104:6720-6725.

Davies, Jeremy R., Kerry M. Lagueux, Beth Sanderson, and Timothy J. Beechie, 2007. Modeling Stream Channel Characteristics From Drainage-Enforced DEMs in Puget Sound, Washington, USA. Journal of the American Water Resources Association (JAWRA) 43(2):414-426.

Good, T. P., M. M. McClure, B. P. Sandford, K. Barnas, D. M. Marsh, B. A. Ryan, E. Casillas. 2007. Quantifying the effect of Caspian tern predation on endangered and threatened Pacific salmonids in the Columbia River. Endangered Species Research, 3:11-21.

Good, T. P., T. J. Beechie, P. McElhany, M. M. McClure, M. H. Ruckelshaus. 2007. Recovery planning for Endangered Species Act-listed Pacific salmon: Using science to inform goals and strategies. Fisheries, 32:426-440.

Hall, J.E., D.M. Holzer, and T.J. Beechie. 2007. Predicting river floodplain and lateral channel migration for salmon habitat conservation. Journal of the American Water Resources Association. 43(3):786-797.

Hoekstra, J. M., K. K. Bartz, M. H. Ruckelshaus, J. M. Moslemi, T. K. Harms. 2007. Quantitative threat analysis for management of an imperiled species-Chinook salmon (Oncorhynchus tshawytscha). Ecological Applications, 17:2061-2073.

McClure, M. M., M. H. Ruckelshaus. 2007. Collaborative science: moving ecosystem-based management forward in Puget Sound. Fisheries.

2006

Bartz, K. K., K. M. Lagueux, M. D. Scheuerell, T. J. Beechie, A. D. Haas, M. H. Ruckelshaus. 2006. Translating restoration scenarios into habitat conditions: an initial step in evaluating recovery strategies for Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 63:1578-1595.

Beechie, T. J., M. Liermann, M. M. Pollock, S. Baker, J. R. Davies. 2006. Channel pattern and river-floodplain dynamics in forested mountain river systems. Geomorphology, 78(1-2):124-141.

Ellis, J. and T. P. Good. 2006. Nest attributes, aggression, and breeding success of gulls in single and mixed species subcolonies. Condor, 108:211-219.

Kiffney, P. M., C. M. Greene, J. R. Davies, J. E. Hall. 2006. Tributary streams create spatial discontinuities in habitat, biological productivity, and diversity in mainstem rivers. Canadian Journal of Fisheries and Aquatic Sciences.

Scheuerell, M. D., R. Hilborn, M. H. Ruckelshaus, K. K. Bartz, K. M. Lagueux, A. D. Haas, K. Rawson. 2006. The Shiraz model: a tool for incorporating fish-habitat relationships in conservation planning. Canadian Journal of Fisheries and Aquatic Sciences, 63:1596-1607.

Sheer, M.B. and E.A. Steel. 2006. Lost watersheds: barriers, aquatic habitat connectivity and salmon persistence in the Willamette and Lower Columbia basins. Transactions of the American Fisheries Society 135(6):1654-1669.

Zabel, Richard, W., Scheuerell, Mark D., McClure, Michelle M. & Williams, John G.(2006) The Interplay between Climate Variability and Density Dependence in the Population Viability of Chinook Salmon. Conservation Biology 20 (1), 190-200. doi: 10.1111/ j.1523-1739.2005.00300.x

2005

Jorgensen, J. C., J. F. Kitchell. 2005. Growth potential and host mortality of the parasitic phase of the sea lamprey (Petromyzon marinus) in Lake Superior. Canadian Journal of Fisheries and Aquatic Sciences, 62:2343-2353.

Jorgensen, J. C., J. F. Kitchell. 2005. Sea lamprey (Petromyzon marinus) size trends in a salmonid stocking context in Lake Superior. Canadian Journal of Fisheries and Aquatic Sciences, 62:2354-2361.

2004

Good, T. P. 2004. Distribution and abundance patterns in Caribbean rocky intertidal zones. Bulletin of Marine Science, 74:459-468.

Steel, E. A., B. E. Feist, D. Jenson, G. R. Pess, M. B. Sheer, J. Brauner, R. E. Bilby. 2004. Landscape models to understand steelhead (Oncorhynchus mykiss) distribution and help prioritize barrier removals in the Willamette Basin, OR, U.S.A. Canadian Journal of Fisheries and Aquatic Sciences, 61:999-1011.

2003

Good, T. P., T. K. Harms, M. H. Ruckelshaus. 2003. Misuse of checklist assessments in endangered species recovery efforts. Conservation Ecology, 7(2):12, online p.

McClure, M. M., E. E. Holmes, B. L. Sanderson, C. E. Jordan. 2003. A large-scale, multispecies status assessment: anadromous salmonids in the Columbia River Basin. Ecological Applications, 13:964-989. (Pre-Press Word | PDF)

McClure, M. M., A. R. McCune. 2003. Evidence for developmental linkage of pigment patterns with body size and shape in Danios (Teleostei: Cyprinidae). Evolution, 57:1863-1875.

Moore, S. E., J. M. Grebmeier, J. R. Davies. 2003. Gray whale distribution relative to forage habitat in the northern Bering Sea: current conditions and retrospective summary. Canadian Journal of Zoology, 81:734-742.

Zabel, R. W., C. J. Harvey, S. L. Katz, T. P. Good, P. S. Levin. 2003. Ecologically Sustainable Yield. American Scientist, 91:150-157.

2002

Good, T. P. 2002. Breeding success in the Western Gull x Glaucous-winged Gull complex: The influence of habitat and nest site characteristics. Condor, 104:353-365.

Levin, P. S., J. A. Coyer, R. Petrik, T. P. Good. 2002. Community-wide effects of non-indigenous species on temperate reefs. Ecology, 83:3182-3193.

Moore, S. E., W. A. Watkins, M. A. Daher, J. R. Davies, M. E. Dahlheim. 2002. Blue Whale Habitat Associations in the Northwest Pacific: analysis of remotely-sensed data using a Geographic Information System. Oceanography, 15(3):20-25.

2001

Kareiva, P., M. Marvier, M. M. McClure. 2001. Dam breaching and chinook salmon recovery: Response. Science, 291:939a.

McClure, M. M., T. Cooney, M. Marvier. 2001. Assessing the role of dams in salmon recovery. Hydro-Review, 20:36?45.

2000

Kareiva, P., P. S. Levin, M. M. McClure. 2000. Letter: Many plans, one bottom line: save endangered salmon. Science, 289:2281-2282.

Kareiva, P., M. Marvier, M. M. McClure. 2000. Recovery and management options for spring/summer chinook salmon in the Columbia River Basin. Science, 290:977-979.

1999

Bergstrom, C. T., P. McElhany, L. Real. 1999. Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens. Proceedings of the National Academy of Sciences, USA, 96:5095-5100.

0012

Kaplan, I. C., I. A. Gray, P. S. Levin. 0012. Cumulative Impacts of Fisheries in the California Current. Fish and Fisheries. doi:10.1111/j.1467-2979.2012.00484.x

Kaplan, I. C., P. Horne, P. S. Levin. 0012. Screening California Current Fishery Management Scenarios using the Atlantis End-to-End Ecosystem Model. Progress in Oceanography, 102:5- 18.

Section or Chapter

2012

Arkema, K. K., J. F. Samhouri. 2012. Linking ecosystem health and services to inform marine ecosystem-based management. In Stephenson, R., J. Annala, J. Runge, M. Hall-Arber. (Eds.) Advancing an Ecosystem Approach in the Gulf of Maine. American Fisheries Society.

Feist, B. E. 2012. Ecosystem. Pages 774-778 in Encyclopedia of Environmetrics. John Wiley & Sons Ltd, Chichester, UK.

2010

Waples, R.S., M.M. McClure, T.C. Wainwright, P. McElhany, and P. Lawson. 2010. Integrating evolutionary considerations in recovery planning for Pacific salmon. Pp. 239-266 in: J.A. DeWoody, J.W. Bickham, C. Michler, K. Nichols, G. Rhodes, and K. Woeste, eds. Molecular approaches in natural resource conservation and management. Cambridge U. Press.

2009

Fresh, K. L., W. Graeber, K. K. Bartz, J. R. Davies, M. D. Scheuerell, A. D. Haas, M. H. Ruckelshaus, B. L. Sanderson. 2009. Incorporating Spatial Structure And Diversity Into Recovery Planning For Anadromous Pacific Salmonids. Pages 403-428 in Knudsen, E. E., J. H. Michael Jr. (Eds.) Pacific Salmon Environmental and Life History Models: Advancing Science for Sustainable Salmon in the Future. American Fisheries Society, Bethesda, Maryland.

Steel, E. A., T. J. Beechie, M. H. Ruckelshaus, A. H. Fullerton, P. McElhany, P. Roni. 2009. Mind the gap: Uncertainty and model communication between managers and scientists. Pages 357-372 in American Fisheries Society Symposium.

2006

Good, T. P., D. Harstad, C. Hall, C. Maranto, M. Harper, B. A. Ryan. 2006. Predation on juvenile salmonids by Caspian Terns nesting in Potholes Reservoir. In Appendix in Piscivorous Waterbird Research on the Columbia River: draft 2005 season summary.

2005

Good, T. P., K. Barnas, D. M. Marsh, M. M. McClure, B. A. Ryan, B. P. Sandford, E. Casillas. 2005. Caspian Tern Predation on Juvenile Salmonid Outmigrants in the Columbia River Estuary. In Caspian Tern Management to Reduce Predation of Juvenile Salmonids in the Columbia River Estuary. U.S. Fish and Wildlife Service Migratory Birds and Habitat Programs, Portland, OR.

2004

Ruckelshaus, M. H., P. McElhany, M. M. McClure, S. Heppell. 2004. Chinook salmon in Puget Sound: Effects of spatially correlated catastrophes on persistence. Pages 208-218 in Ackakaya, R., M. Burgman, O. Kindvall, C. C. Wood, P. Sjogren-Gulve, J. S. Hatfield, M. A. McCarthy. (Eds.) Species Conservation and Management: Case Studies. Oxford Univ. Press.

2003

Ruckelshaus, M. H., P. McElhany, M. J. Ford. 2003. Recovering species of conservation concern: Are populations expendable? Pages 305-329 in Kareiva, P., S. A. Levin. (Eds.) The importance of species : perspectives on expendability and triage. Princeton University Press.

Sanderson, B. L., E. A. Steel, T. J. Beechie, G. R. Pess, M. B. Sheer, C. A. Campbell. 2003. Analyses for Phase I recovery planning: setting recovery goals. Pages 18-39 in Beechie, T. J., E. A. Steel, P. Roni, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: an integrated assessment approach for salmon habitat. U.S. Dept. Commerce, NOAA Technical Memorandum, NMFS-NWFSC-58, 183 p.

Steel, E. A., M. Liermann, P. McElhany, N. L. Scholz, A. Cullen. 2003. Managing uncertainty in habitat recovery planning. In Beechie, T. J., P. Roni, E. A. Steel, E. Quimby. (Eds.) Ecosystem recovery planning for listed salmon: An integrated assessment approach for salmon habitat. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-58, 183 p.

2002

Good, T. P., J. Fabbri. 2002. Catastrophic risk assessment of Lower Columbia and Willamette River ESUs of threatened Pacific salmon. In Appendix L in Willamette/Lower Columbia Pacific salmonid viability criteria. Willamette/Lower Columbia Technical Recovery Team Report (P. McElhany et al.), December 2, 2002.

McClure, M. M., G. R. Pess. 2002. Revision of water conservation. In McGraw-Hill Encyclopedia of Science and Technology, 9th Ed.

Technical Memorandum

2011

Levin, P. S., F. B. Schwing. (Eds.) 2011. Technical background for an integrated ecosystem assessment of the California Current: Groundfish, salmon, green sturgeon, and ecosystem health. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-109, 330 p.

2010

Drake, J., E. A. Berntson, J. M. Cope, R. G. Gustafson, E. E. Holmes, P. S. Levin, N. Tolimieri, R. S. Waples, S. Sogard, G. D. Williams. 2010. Status review of five rockfish species in Puget Sound, Washington: Bocaccio (Sebastes paucispinis), canary rockfish (S. pinniger), yelloweye rockfish (S. ruberrimus), greenstriped rockfish (S. elongatus), and redstripe rockfish (S. proriger). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-108, 234 p.

Harvey, C. J., K. K. Bartz, J. R. Davies, T. B. Francis, T. P. Good, A. D. Guerry, M. B. Hanson, K. K. Holsman, J. Miller, M. Plummer, J. C. Reum, L. D. Rhodes, C. A. Rice, J. F. Samhouri, G. D. Williams, N. J. Yoder, P. S. Levin, M. H. Ruckelshaus. 2010. A mass-balance model for evaluating food web structure and community-scale indicators in the cental basin of Puget Sound. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-106, 180 p.

2008

Wainwright, T. C., M. W. Chilcote, P. W. Lawson, T. E. Nickelson, C. W. Huntington, J. S. Mills, K. M. Moores, G. H. Reeves, H. A. Stout, L. A. Weitkamp. 2008. Biological recovery criteria for the Oregon Coast coho salmon evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-91, 199 p.

2007

Lawson, P. W., E. P. Bjorkstedt, M. W. Chilcote, C. W. Huntington, J. S. Mills, K. M. Moores, T. E. Nickelson, G. H. Reeves, H. A. Stout, T. C. Wainwright, L. A. Weitkamp. 2007. Identification of historical populations of coho salmon (Oncorhynchus kisutch) in the Oregon coast evolutionarily significant unit. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-79, 129 p.

2001

Stout, H. A., B. B. McCain, R. D. Vetter, T. L. Builder, W. H. Lenarz, L. L. Johnson, R. D. Methot. 2001. Status Review of Copper Rockfish (Sebastes caurinus), Quillback Rockfish (S. maliger), and Brown Rockfish (S. auriculatus) in Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-46, xxiv, 158 p.

Stout, H. A., R. G. Gustafson, W. H. Lenarz, B. B. McCain, D. M. Van Doornik, T. L. Builder, R. D. Methot. 2001. Status review of Pacific herring in Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-45, 175 p.

2000

McElhany, P., M. H. Ruckelshaus, M. J. Ford, T. C. Wainwright, E. P. Bjorkstedt. 2000. Viable salmon populations and the recovery of evolutionarily significant units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-42, 156 p.

Report

2010

Shanks, A., G. C. Roegner, J. Miller. 2010. Using megalopae abundance to predict future commercial catches of Dungeness crabs (Cancer magister) in Oregon. Report 51, California Cooperative Oceanic Fisheries Investigations, 106-118 p.

2007

Ford, M. J., N. J. Sands, P. McElhany, R. G. Kope, D. Simmons, and P. Dygert. 2007. Analyses to Support a Review of an ESA Jeopardy Consultation on Fisheries Impacting Lower Columbia Tule Chinook Salmon. Report of the National Marine Fisheries Service.

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