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In press
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2008
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2007
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In press
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. In press. Coastwide Status Review of Coastal Cutthroat Trout (Oncorhynchus clarki clarki) by the National Marine Fisheries Service for listing under the Endangered Species Act. The 2005 Coastal Cutthroat Trout Symposium: status, management, biology, and conservation. 2 Oregon Chapter of AFS, Portland, OR
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2008
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, and J. J. Hard. 2008. Summary of 1998 coast wide coastal cutthroat trout status review conducted by the National Marine Fisheries Service. Pages 3-4 in P. J. Connolly, T. H. Williams, and R. E. Gresswell, editors. The 2005 coastal cutthroat trout symposium: status, management, biology, and conservation. Oregon Chapter, American Fisheries Society, Portland.
Neely, K. G., J. M. Myers, J. J. Hard, and K. D. Shearer. 2008. Comparison of growth, feed intake, and nutrient efficiency in a selected strain of coho salmon (Oncorhynchus kisutch) and its source stock. Aquaculture 283 (2008):134-140.
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2007
Gustafson, R. G., R. S. Waples, J. M. Myers, L. A. Weitkamp, G. J. Bryant, O. W. Johnson, J. J. Hard. 2007. Pacific salmon extinctions: quantifying lost and remaining diversity. Conservation Biology, 21(4):1009-1020. (Appendix S1 | Appendix S2 | Appendix S3)
Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2007. Status review of Puget Sound steelhead (Oncorhynchus mykiss). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-81, 117 p.
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2006
Gustafson, R. G., E. Iwamoto. 2006. A DNA-based identification key to Pacific Northwest freshwater mussel glochidia: importance to salmonid and mussel conservation. Northwest Science, 79(4):233-245.
Gustafson, R. G., J. Drake, M. J. Ford, J. M. Myers, E. E. Holmes, R. S. Waples. 2006. Status review of Cherry Point Pacific herring (Clupea pallasii) and updated status review of the Georgia Basin Pacific herring distinct population segment under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-76, 182 p.
Myers, J. M., C. Busack, D. Rawding, A. R. Marshall, D. J. Teel, D. M. Van Doornik, M. T. Maher. 2006. Historical population structure of Pacific salmonids in the Willamette River and lower Columbia River basins. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-73, 311 p.
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2005
Hard, J. J., J. M. Myers, M. J. Ford, R. G. Kope, G. R. Pess, R. S. Waples, G. A. Winans, B. A. Berejikian, F. W. Waknitz, P. B. Adams, P. A. Bisson, D. E. Campton, R. Reisenbichler. 2005. Status review update for Puget Sound steelhead. Report submitted to NOAA/NMFS Northwest Regional Office, Seattle, Washington, 26 July 2005, 70 p. + 4 appendices.
McClelland, E. K., J. M. Myers, J. J. Hard, L. K. Park, K. A. Naish. 2005. Two generations of outbreeding in coho salmon (Oncorhynchus kisutch): effects on size and growth. Canadian Journal of Fisheries and Aquatic Sciences, 62:2538-2547.
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2004
Gharrett, A. J., R. G. Gustafson, P. Johnson, J. L. Nielsen, J. E. Seeb, L. W. Seeb, W. W. Smoker, R. L. Wilmot, S. Keller, G. H. Thorgaard. 2004. Introduction to genetics of subpolar fish and invertebrates. Environmental Biology of Fishes, 69(1-4):1-5.
Iwamoto, E., M. J. Ford, R. G. Gustafson. 2004. Genetic population structure of Pacific Hake (Merluccius productus) in the Pacific Northwest. Environmental Biology of Fishes, 69:187-199.
Johnson, O. W., K. Neely, R. S. Waples. 2004. Lopsided fish in the Snake River Basin - fluctuating asymmetry as a way of assessing impact of hatchery supplementation in chinook salmon, Oncorhynchus tshawytscha. Environmental Biology of Fishes, 69:379-393.
Mahnken, C. V., W. T. Fairgrieve, F. W. Waknitz, D. J. Maynard, H. L. Blankenship. 2004. Lessons for marine fish enhancement: experiences with Pacific salmon. Pages 91-105 in Stock Enhancement and Sea Ranching: Developments, Pitfalls and Opportunities. Blackwell, Oxford.
Waples, R. S., D. J. Teel, J. M. Myers, A. R. Marshall. 2004. Life-history divergence in Chinook salmon: historic contingency and parallel evolution. Evolution, 58(2):386-403. (txt | Excel)
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2003
Myers, J. M., C. Busack, D. Rawding, A. R. Marshall. 2003. Historical population structure of Willamette and Lower Columbia River Basin Pacific salmonids. WLC-TRT Report, NOAA Fisheries Northwest Fisheries Science Center, Seattle. WA.
Nash, C. E., F. W. Waknitz. 2003. Interactions of Atlantic salmon in the Pacific Northwest: I. Salmon enhancement and the net-pen farming industry. Fisheries Research, 62:237-254.
Steel, E. A., L. Johnston, B. E. Feist, G. R. Pess, R. E. Bilby, D. Jensen, T. J. Beechie, J. M. Myers. 2003. Pacific salmon recovery planning and the Salmonid Watershed Analysis Model (SWAM): a broad-scale tool for assisting in the development of habitat recovery plans. Endangered Species Update, 20(1):3-15.
Waknitz, F. W., R. N. Iwamoto, M. S. Strom. 2003. Interactions of Atlantic salmon in the Pacific Northwest: IV. Impacts on the local ecosystems. Fisheries Research, 62:307-328.
Waknitz, F. W. 2003. U.S. salmon-farming sanctions could also hurt commercial fishing. Global Aquaculture Advocate, April 2003:19-20.
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2002
Hard, J. J. 2002. Update on the status of pink salmon in the Pacific Northwest. Pages 47-51 in Neely, K., O. W. Johnson, K. W. Myers, J. J. Hard. (rapporteurs) Proceedings of the 20th Northeast Pacific Pink and Chum Workshop, Seattle, Washington.
Neely, K., O. W. Johnson, K. W. Myers, J. J. Hard. (rapporteurs) 2002. Proceedings of the 20th Northeast Pacific Pink and Chum Workshop, Seattle, Washington. 167 p.
Waknitz, F. W. 2002. Farms first, hatcheries next? Alaska Fisherman's Journal, Sept 2002:4.
Waknitz, F. W., T. J. Tynan, C. E. Nash, R. N. Iwamoto, L. G. Rutter. 2002. Review of Potential Impacts of Atlantic Salmon Culture on Puget Sound Chinook Salmon and Hood Canal Summer-Run Chum Salmon Evolutionarily Significant Units. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-53, 83 p. (PDF | HTML)
Weitkamp, L. A., K. Neely. 2002. Coho salmon (Oncorhynchus kisutch) ocean migration patterns: insight from marine coded-wire tag recoveries. Canadian Journal of Fisheries and Aquatic Sciences, 59:1100-1115.
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2001
Gustafson, R. G., R. S. Waples, S. T. Kalinowski, G. A. Winans. 2001. Evolution of sockeye salmon ecotypes. Science, 291:251-252.
Johnson, O. W., A. M. Garrett, W. S. Grant, K. Neely, M. H. Ruckelshaus, F. W. Waknitz, J. J. Hard. 2001. Summary of status review of coastal cutthroat trout from the Pacific northwest. Pages 255-257 in Brewin, M. K., A. J. Paul, M. Monita. (Eds.) Bull trout II conference proceedings. Trout Unlimited Canada, Calgary, Alberta.
Myers, J. M., W. K. Hershberger, A. M. Saxton, R. N. Iwamoto. 2001. Estimates of genetic and phenotypic parameters for length and weight of marine net-pen reared coho salmon (Onchorhynchus kisutch Walbaum). Aquaculture Research, 32:277-285.
Myers, J. M., P. O. Heggelund, G. Hudson, R. N. Iwamoto. 2001. Genetics and broodstock management of coho salmon. Aquaculture, 197:43-62.
Nash, C. E., K. M. Brooks, W. T. Fairgrieve, R. N. Iwamoto, C. V. Mahnken, M. B. Rust, M. S. Strom, F. W. Waknitz. 2001. The net-pen salmon farming industry in the Pacific Northwest. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-49, 125 p. (PDF | HTML)
Stout, H. A., R. G. Gustafson, W. H. Lenarz, B. B. McCain, D. M. Van Doornik, T. L. Builder, R. D. Methot. 2001. Status review of Pacific herring in Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-45, 175 p.
Waples, R. S., R. G. Gustafson, L. A. Weitkamp, J. M. Myers, O. W. Johnson, P. J. Busby, J. J. Hard, G. J. Bryant, F. W. Waknitz, K. Neely, D. J. Teel, W. S. Grant, G. A. Winans, S. Phelps, A. R. Marshall, B. M. Baker. 2001. Characterizing Diversity in Salmon From the Pacific Northwest. Journal of Fish Biology, 59(Suppl. A):1-41.
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2000
Gustafson, R. G., W. H. Lenarz, B. B. McCain, C. C. Schmitt, W. S. Grant, T. L. Builder, R. D. Methot. 2000. Status review of Pacific hake, Pacific cod, and walleye pollock from Puget Sound, Washington. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-44, 275 p.
Myers, J. M., R. N. Iwamoto, D. J. Teel, D. M. Van Doornik, W. K. Hershberger. 2000. Coho salmon broodstock development---1977 to 1998. Ten generations of systematic selective breeding. Bulletin of National Research Institute of Aquaculture, Supplement, 1:63-70.
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1999
Gustafson, R. G., G. A. Winans. 1999. Distribution and population genetic structure of river-/sea-type sockeye salmon in western North America. Ecology of Freshwater Fish, 8:181-193.
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, J. J. Hard. 1999. Status review of coastal cutthroat trout from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-37, 292 p. (PDF | HTML)
Sarder, M. R., D. J. Penman, J. M. Myers, B. J. McAndrew. 1999. Production and propagation of fully inbred clonal lines in the Nile tilapia (Oreochromis niloticus L.). Journal of Experimental Zoology, 284:675-685.
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1998
Gustafson, R. G., R. D. Turner, R. A. Lutz, R. C. Vrijenhoek. 1998. A new genus and five new species of mussels (Bivalvia, Mytilidae) from deep-sea sulfide/hydrocarbon seeps in the Gulf of Mexico. Malacologia, 40(1-2):63-112.
Hoeh, W. R., M. B. Black, R. G. Gustafson, A. E. Bogan, R. A. Lutz, R. C. Vrijenhoek. 1998. Testing alternative hypotheses of Neotrigonia (Bivalvia : Trigonioida) phylogenetic relationships using cytochrome C oxidase subunit I DNA sequences. Malacologia, 40:267-278.
Mahnken, C. V., G. Ruggerone, F. W. Waknitz, T. A. Flagg. 1998. A historical perspective on salmonid production from Pacific Rim hatcheries. North Pacific Anadromous Fish Commission Bulletin, 1:38?53.
Myers, J. M., R. G. Kope, G. J. Bryant, D. J. Teel, L. J. Lierheimer, T. C. Wainwright, W. S. Grant, F. W. Waknitz, K. Neely, S. Lindley, R. S. Waples. 1998. Status review of Chinook salmon from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-35, 443 p. (PDF | HTML)
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1997
Bushek, D., S. K. Allen, K. A. Alcox, R. G. Gustafson, S. E. Ford. 1997. Response of Crassostrea virginica to in vitro cultured Perkinsus marinus: Preliminary comparisons of three inoculation methods. Journal of Shellfish Research, 16:479-485.
Gustafson, R. G., T. C. Wainwright, G. A. Winans, F. W. Waknitz, L. T. Parker, R. S. Waples. 1997. Status review of sockeye salmon from Washington and Oregon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-33, 282 p. (PDF | HTML)
Johnson, O. W., W. S. Grant, R. G. Kope, K. Neely, F. W. Waknitz, R. S. Waples. 1997. Status review of chum salmon from Washington, Idaho. Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-32, 280 p. (PDF | HTML)
Johnson, O. W., R. S. Waples, T. C. Wainwright, K. Neely, F. W. Waknitz, L. T. Parker. 1997. Summary of the biological status review of Umpqua River sea-run cutthroat trout. Pages 87-102 in Hall, J. R. (Ed.) Sea-Run Cutthroat Trout: Biology, Management, and Future Conservation, proceedings of a symposium. Reedsport, OR, Oct. 12-14, 1995. Oregon Chapter, American Fisheries Society, Corvallis, Oregon.
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1996
Achord, S., G. M. Matthews, O. W. Johnson, D. M. Marsh. 1996. Use of passive integrated transponder (PIT) tags to monitor migration timing of Snake River chinook salmon smolts. North American Journal of Fisheries Management, 16:302-313.
Busby, P. J., T. C. Wainwright, G. J. Bryant, L. J. Lierheimer, R. S. Waples, F. W. Waknitz, I. V. Lagomarsino. 1996. Status Review of West Coast Steelhead from Washington, Idaho, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-27, 261 p. (PDF | HTML)
Hard, J. J., R. G. Kope, W. S. Grant, F. W. Waknitz, L. T. Parker, R. S. Waples. 1996. Status review of pink salmon from Washington, Oregon, and California. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-25, 131 p. (PDF | HTML)
Maynard, D. J., D. A. Frost, F. W. Waknitz, E. F. Prentice. 1996. Vulnerability of marked age-0 steelhead to a visual predator. Transactions of the American Fisheries Society, 125:330-333.
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1995
Flagg, T. A., F. W. Waknitz, D. J. Maynard, G. B. Milner, C. V. Mahnken. 1995. Impact of hatcheries on native coho salmon populations in the lower Columbia River. American Fisheries Society Symposium, 15:366-375.
Flagg, T. A., F. W. Waknitz, D. J. Maynard, G. B. Milner, C. V. Mahnken. 1995. The effect of hatcheries on native coho salmon populations in the lower Columbia River. Pages 366-375 in Schramm, H. L. Jr., R. G. Piper. (Eds.) Uses and effects of cultured fishes in aquatic ecosystems. American Fisheries Society, Bethesda, MD.
Stuehrenberg, L. C., D. Smith, O. W. Johnson. 1995. Evaluation of factors affecting collection efficiency estimates of chinook salmon and steelhead smolts at McNary Dam, 1989. Final Report to the Bonneville Power Administration, Contract DE-AI79- 88BP1024, 25 p.
Waknitz, F. W., G. M. Matthews, T. C. Wainwright, G. A. Winans. 1995. Status review for mid- Columbia River summer chinook salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-22, 80 p.
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1994
Johnson, O. W., R. S. Waples, T. C. Wainwright, K. Neely, F. W. Waknitz, L. T. Parker. 1994. Status review for Oregon's Umpqua River sea-run cutthroat trout. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-15, 122 p.
Prentice, E. F., D. J. Maynard, S. L. Downing, D. A. Frost, M. S. Kellett, D. A. Bruland, P. Sparks-Mcconkey, F. W. Waknitz, R. N. Iwamoto, K. W. McIntyre, N. N. Paasch. 1994. A study to determine the biological feasibility of a new fish tagging system (1990-93). Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 250 p.
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1993
Busby, P. J., O. W. Johnson, T. C. Wainwright, F. W. Waknitz, R. S. Waples. 1993. Status review for Oregon's Illinois River winter steelhead. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-10, 85 p.
Johnson, O. W., D. J. Maynard, G. B. Milner, F. W. Waknitz. 1993. Genetic considerations in the status review of lower Columbia River coho salmon. Pages 161-181 in Coho Salmon Workshop. Coast Bastion Inn, Nanamio, British Columbia.
Prentice, E. F., D. J. Maynard, P. Sparks-Mcconkey, C. S. McCutcheon, D. Neff, W. Steffens, F. W. Waknitz, A. L. Jensen, L. C. Stuehrenberg, S. L. Downing, B. P. Sandford, T. W. Newcomb. 1993. A study to determine the biological feasibility of a new fish tagging system. Report to the Bonneville Power Administration, Contract DE-AI79-84BP11982, 182 p.
Waples, R. S., O. W. Johnson, P. B. Aebersold, C. K. Shiflett, D. M. Van Doornik, D. J. Teel, A. E. Cook. 1993. A genetic monitoring and evaluation program for supplemented populations of salmon and steelhead in the Snake River basin. Annual Report of Research to the Bonneville Power Administration, Portland, Oregon, Contract DE-A179-89BP00911, Project No. 89-096.
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1991
Johnson, O. W., T. A. Flagg, D. J. Maynard, G. B. Milner, F. W. Waknitz. 1991. Status review for lower Columbia River coho salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-202, 94 p. (Complete Article (PDF) | Summary (HTML))
Waples, R. S., O. W. Johnson. 1991. Status Review for Snake River Sockeye Salmon. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/NWC-195.
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1989
Dickhoff, W. W., C. V. Mahnken, F. W. Waknitz, W. S. Zaugg, M. G. Bernard, C. V. Sullivan. 1989. Effect of temperature and feeding on smolting and seawater survival of Atlantic salmon (Salmo salar). Aquaculture, 82:93-102.
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1986
Johnson, O. W., W. W. Dickhoff, F. Utter. 1986. Comparative growth and development of diploid and triploid coho salmon Oncorhynchus kisutch. Aquaculture, 57:329-336.
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1982
Folmar, L. C., W. W. Dickhoff, C. V. Mahnken, F. W. Waknitz. 1982. Stunting and parr-reversion during smoltification of coho salmon (Oncorhynchus kisutch). Aquaculture, 28:91-104.
Gorbman, A., W. W. Dickhoff, J. L. Mighell, E. F. Prentice, F. W. Waknitz. 1982. Morphological indices of developmental progress in the parr-smolt coho salmon, Oncorhynchus kisutch. Aquaculture, 28:1-20.
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