U.S. Dept Commerce/NOAA/NMFS/NWFSC/Publications

NOAA-NMFS-NWFSC TM-35: Chinook Status Review

Table 3. Samples of chinook salmon used in the genetic analyses for this report. Samples are referred to in figures by the sample codes shown here. Genetic data were provided by Lisa Seeb (Alaska Department of Fish and Game; Laboratory 1), National Marine Fisheries Service (Laboratory 2), Bartley et al. (1992) (University of California at Davis; Laboratory 3), and Anne Marshall (Washington Department of Fish and Wildlife; Laboratory 4). Asterisks indicate combined temporal samples from the same location, or samples from neighboring populations that were combined in the genetic analysis for this report.

Sam-
ple
No. 		Source Run N Date Laboratory
Sacramento River Basin
1* Mokelumne and Nimbus Hatcheries fall 350 1981,1984, 1988 2,3
2 Merced Hatchery fall 100 1988 3
3 Feather Hatchery fall 300 1981, 1984, 1988 2,3
4 Feather Hatchery spring 244 1981,1984, 1988 2,3
5 Coleman Hatchery (Battle Creek stock) fall 200 1981,1987 2,3
6 Upper Sacramento River winter 94 1987 3

California Coast
7 Mattole River fall 150 1984,1987 2,3
8 Van Duzen River fall 100 1987 3
9 Salmon Creek fall 96 1987 3
10 Redwood Creek (Eel River) fall 93 1987 3
11 Benbow Creek fall 99 1987 3
12 Hollow Tree Creek fall 100 1987 3
13 Mid Fork Eel River fall 95 1987 3
14 Mad River Hatchery fall 149 1984,1987 2,3
15 North Fork Mad River fall 61 1987 3
16 Redwood Creek fall 195 1987 3

Klamath and Trinity River Basin
17 Iron Gate Hatchery fall 247 1981,1984,1987 2,3
18 Trinity Hatchery fall 270 1981,1984,1987 2,3
19* Salmon and Scott Rivers fall 198 1984,1987 2,3
20* Shasta River and Bogus Creek fall 259 1984,1987 2,3
 
Sam-
ple
No. 		Source Run N Date Laboratory
21 South Fork Trinity River fall 100 1987 3
22 Blue Creek fall 100 1987 3
23 Omagar Creek Hatchery fall 100 1988 3

South Oregon and north California Coasts
24 Rowdy Creek Hatchery fall 112 1984,1987 2,3
25 Mid fork Smith River fall 99 1987 3
26 Winchuck River fall 170 1984,1995 2
27 Chetco River fall 343 1981,1984, 1988,1996 2,3
28 Pistol River fall 200 1984,1995 2
29 Hunter Creek fall 100 1995 2
30 Cole Rivers Hatchery spring 263 1981,1985,1995 2
31 Applegate River fall 181 1984,1988 2,3
32 Rogue River at Gold Hill fall 100 1988 3

Mid- and north Oregon Coast
33 Euchre Creek fall 57 1996 2
34* Elk River and Elk River Hatchery fall 400 1981,1985, 1988,1995 2,3
35 Sixes River fall 268 1981,1983,1995 2
36 South Fork Coquille River fall 100 1988 3
37 Bandon Hatchery fall 59 1995 2
38 Millicoma River fall 100 1988 3
39 Morgan Creek Hatchery fall 100 1988 3
40 Noble Creek Hatchery fall 100 1995 2
41 Rock Creek Hatchery spring 300 1981,1985,1995 2
42 Rock Creek Hatchery fall 100 1995 2
43 Siuslaw River fall 160 1983,1996 2
44 Alsea River fall 181 1981,1983,1995 2
45 Fall Creek Hatchery fall 300 1981,1985,1988 2,3
46 Trask Hatchery fall 300 1981,1985,1987 2,4
47 Nehalem River summer 53 1996 2

Lower Columbia River
48 Cowlitz Hatchery spring 152 1982,1987 2,4
49 Cowlitz Hatchery fall 198 1981,1982,1988 2,4
50 Kalama Hatchery spring 159 1982,1990 2,4
51 Kalama Hatchery fall 199 1982,1988,1989 2,4
52 Lewis Hatchery spring 135 1988 4
53 Lewis River fall 120 1990 4
 
Sam-
ple
No. 		Source Run N Date Laboratory
54* Mckenzie and Dexter Hatcheries spring 248 1982,1987,1988 2,4
55 Clackamas Hatchery spring 100 1988 4
56 North Fork Clackamas River spring 80 1996 2
57 Marion Forks Hatchery spring 100 1990 4
58 Sandy River fall 140 1990,1991,1992 4
59* Spring Creek and Big Creek Hatcheries fall 504 1982,1987,1990 2,4

Mid- and Upper Columbia River spring run
60 Carson Hatchery spring 250 1982,1989 2,4
61 Klickitat River spring 261 1990,1991, 1992,1993 4
62* Warm Springs Hatchery and River spring 210 1982,1987 2
63 Round Butte Hatchery spring 159 1982,1990 2,4
64 North Fork John Day River spring 85 1990,1991,1992 4
65* Yakima and Cle Elum Rivers spring 401 1986,1989,1990 4
66 American River spring 226 1986,1989,1990 4
67* Naches, Little Naches, and Bumping Rivers spring 251 1989,1990 4
68 White River spring 137 1989,1991,1992 4
69 Nason River spring 122 1989,1992 4
70 Chiwawa River spring 247 1989,1990, 1991,1992 4
71 Methow River spring 93 1993 4
72 Chewack River spring 151 1992,1993 4
73 Twisp River spring 107 1992,1993 4

Mid- and upper Columbia River summer and fall run
74 Klickitat River summer 324 1991,1992, 1993,1994 4
75 Klickitat River fall 250 1991,1992, 1993,1994 4
76 Bonneville Hatchery fall 200 1989,1990 4
77 Little White Salmon Hatchery fall 200 1989,1990 4
78 Deschutes River fall 179 1982,1985,1990 2,4
79 Yakima River fall 109 1990 4
80 Marion Drain fall 153 1989,1990 4
81 Hanford Reach fall 258 1982,1990 2,4
82 Priest Rapids Hatchery fall 300 1981,1986, 1987,1990 2,4
83 Wenatchee River summer 350 1985,1988, 1989,1990 2,4
84 Similkameen River summer 206 1991,1992,1993 4
85 Methow River summer 59 1992,1993 4

 
 
Sam-
ple
No. 		Source Run N Date Laboratory
Snake River
86 Lyons Ferry Hatchery fall 399 1985,1986,1987,1990 2,4
87 Tucannon Hatchery spring 758 1985,1986,1987, 1988,1989,1990 2,4
88 Rapid River spring 293 1982,1985,1990 2
89 Lookingglass Hatchery spring 100 1991 2
90 Minam River (Grande Ronde River) spring 100 1990 2
91 Lostine River (Grande Ronde River) spring 297 1989,1990,1991 2
92 Catherine Creek (Grande Ronde River) spring 100 1990 2
93 McCall Hatchery summer 350 1982,1989, 1990,1991 2
94 Secesh River summer 254 1989,1990,1991 2
95 Johnson Creek summer 316 1982,1989,1990,1991 2
96 Marsh Creek spring 259 1989,1990,1991 2
97 Sawtooth Hatchery spring 350 1982,1989, 1990,1991 2
98 Valley Creek spring 279 1989,1990,1991 2
99 Upper Salmon River at Blaine Bridge spring 60 1989 2
100 Upper Salmon River at Frenchman Creek spring 60 1991 2
101 Upper Salmon River at Sawtooth spring 100 1991 2
102 Imnaha River and Hatchery summer 480 1989,1990, 1991 2

Washington Coast
103 Naselle Hatchery fall 448 1987,1988,1989,1990 4
104* Wynoochee River and Hatchery fall 209 1990,1993 4
105 Wishkah River fall 96 1990,1993 4
106 East Fork Satsop River fall 102 1993 4
107 Skookumchuck River spring 74 1990,1991,1992,1993 4
108 Humptulips Hatchery fall 103 1990 4
109 Quinault Hatchery fall 200 1981,1990 2,4
110 Queets River fall 190 1981,1990 2,4
111 Hoh River fall 176 1981,1982,1990 2,4

Strait of Juan de Fuca
112 Hoko River fall 80 1993 4
113 Elwha Hatchery fall 200 1981,1988 2,4
114 Elwha River fall 200 1988,1991 4

 
Sam-
ple
No. 		Source Run N Date Laboratory
Puget Sound
115* North Fork Nooksack Hatchery and River spring 255 1985,1988,1993 4
116 South Fork Nooksack River spring 51 1993 4
117 Skagit Hatchery spring 92 1990 4
118 Skagit Hatchery summer 90 1988 4
119 Skagit Hatchery fall 107 1987 4
120 Skagit River fall 69 1986,1987 4
121 Sauk River summer 74 1986 4
122 Suiattle River spring 543 1985,1986,1987, 1988,1989,1990 4
123 Sauk River spring 147 1986,1994 4
124 Cascade River spring 84 1993,1994 4
125 Skagit River summer 284 1986,1994 4
126 North Fork Stilliguamish River summer 106 1987,1988 4
127 Skykomish River summer 235 1987,1988,1989 4
128 Bridal Veil Creek summer 87 1987,1988 4
129 Skykomish Hatchery fall 106 1987 4
130 Wallace River fall 82 1989 4
131 Sultan River fall 95 1987,1988, 4
132 Snoqualmie River fall 101 1988 4
133 Green River Hatchery fall 398 1981,1987,1988,1990 2,4
134 White River Hatchery spring 400 1992,1993 4
135 South Prairie Creek fall 86 1992,1993 4
136 Deschutes Hatchery fall 250 1981,1987 2,4
137 Hoodsport Hatchery fall 248 1981,1988 2,4

Fraser River Basin
138* Chehalis Hatchery and Harrison River fall 440 1988,1989,1990 4
139 Chilliwack Hatchery fall 87 1989,1990 4
140 Coldwater River summer 162 1982,1987 2
141 Deadman River summer 80 1987 2
142 Spius Creek summer 158 1987 2
143 Bonaparte River summer 120 1987 2
144* Salmon River and Hatchery summer 420 1985,1987,1988 2
145* Eagle River and Hatchery summer 380 1985,1987,1988 2
147 Adams River summer 80 1987 2
148* Clearwater Hatchery and Horseshoe River summer 302 1982,1985,1987 2
 
Sam-
ple
No. 		Source Run N Date Laboratory
149 Finn Creek summer 120 1987 2
150 Chilko River summer 227 1982,1987,1988 2
151 Chilcotin River summer 80 1987 2
152* Quesnel Hatchery and River spring 676 1985,1987, 1988,1990 2
153 Lower Cariboo River spring 120 1987 2
154 Upper Cariboo River spring 180 1985,1987 2
155 Baezaeko River spring 260 1985,1987 2
156 Willow River spring 256 1985,1987 2
157 Walker Creek spring 80 1987 2
158 Morkill River spring 80 1987 2
159 Horsey River spring 120 1987 2
160 Swift Creek spring 80 1987 2
161 Fraser River at Tete Jaune spring 137 1982,1988 2,4

South British Columbia
162 Tenderfoot Hatchery summer 435 1985,1988,1991,1992 2,4
163 Bute Inlet fall 109 1991 4
164 Cowichan Hatchery fall 484 1988,1989,1990 4
165 Nanaimo Hatchery fall 241 1985,1988, 1989,1990 2,4
166 Nanaimo/Nanaimo Lake summer 104 1989,1990 4
167 Big Qualicum Hatchery fall 537 1981,1985, 1988,1989, 1990 2,4
168 Quinsam Hatchery fall 643 1981,1985, 1988,1989, 1990 2,4
169 Robertson Creek Hatchery fall 300 1981,1985, 1991 2
170 Kennedy River fall 150 1991,1992 4
171* Sucwoa and Conuma Rivers fall 180 1985,1992 2

Central British Columbia
172 Wannock River fall 180 1988,1991 2
173 Kitimat River summer 190 1985,1988 2
174 Atnarko River spring 329 1985,1990, 1991 2

Skeena River Basin
175 Kitsumkalum River summer 281 1988,1989,1991 2
176 Cedar River spring 100 1991 2
177 Kitwanga River spring 111 1991 2
178 Bulkley River spring 192 1989,1991 2
179 Kispiox River spring 80 1989 2
180 Babine River spring 113 1982,1988 2
181 Bear River spring 218 1988,1991 2

 
Sam-
ple
No. 		Source Run N Date Laboratory
Nass River Basin
182 Cranberry River spring 93 1988,1989 2
183 Damdochax River spring 75 1988 2

Stikine River Basin
184 Iskut River spring 73 1990 4
185 Little Tahltan River spring 100 1990 4

Southeast Alaska
186 Whitman Lake Hatchery - 55 1994 1
187 Tahini River - 69 1992 1

Kenai
188 Crooked Creek - 82 1992 1

Kodiak
189 Ayakulik River - 98 1993 1

Bristol Bay
190 Nushagak River - 53 1993 1
191 Togiak River - 62 1993 1

Kuskokwim
192 Tuluksak River - 50 1993 1
193 Kogrukluk River - 50 1993 1


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