Abbott, I. A., and G. J Hollenberg. 1976. Marine Algae of California. Stanford University Press, Stanford, CA, 827 p.
Alesandrini, S., and Bernardi, G. 1999. Ancient species flocks and recent speciation events: What can rockfish teach us about cichlids (and vice versa)? J. Mol. Evol. 49:814-818.
Alheit, J., and E. Hagen. 1997. Long_term climate forcing of European herring and sardine populations. Fish. Oceanogr. 6:130-139.
Anderson, F. E. 1968. Seaward terminus of the Vashon Continental Glacier in the Strait of Juan de Fuca. Mar. Geol. 6:419-438.
Anderson, T. W. 1983. Identification and development of nearshore juvenile rockfishes (Genus Sebastes) in central California kelp forests. Masters Thesis, California State Univ., Fresno, CA, 216 p.
Avise, J. C. 1994. Molecular markers, natural history, and evolution. Chapman and Hall, New York, NY, 511 p.
Avise, J. C., J. Arnold, R. M. Ball, E. Bermingham, T. Lamb, J. E. Neigel, C. A. Reeb, and N. C. Saunders. 1987. Intraspecific phylogeography: the mitochindrial DNA bridge between population genetics and systematics. Ann. Rev. Ecol. Syst. 18:489-522.
Bailey, A., H. Berry, B. Bookheim, and D. Stevens. 1998. Probability-based estimation of nearshore habitat characteristics. In Proceedings of Puget Sound Research '98 Conference, March 12-13, p. 580-588. Puget Sound Water Quality Action Team, Olympia, WA.
Bargmann, G. G. 1977. Instances of copper rockfish consuming a spiny dogfish shark. Calif. Dep. Fish Game Publ. 63:192.
Baumgartner, T. R., A. Soutar, and V. Ferreira_Bartrina. 1992. Reconstruction of the history of Pacific sardine and northern anchovy populations over the past two millennia from sediments of the Santa Barbara Basin, California. Calif. Coop. Ocean. Fish. Investig. Rep. 33:24_40.
Bekvar, N., J. Field, S. Salazar, and R. Hoff. 1996. Contaminants in Aquatic Habitats at Hazardous Waste Sites: Mercury. U.S. Dep. Commer., NOAA Tech. Memo. NOS-ORCA-100. Hazardous Materials Response and Assessment Division, NOAA, 74 p.
Bocking, R. C. 1997. A portrait of a mighty river. University of Washington Press, Seattle, WA, 294 p.
Bollens, S. M., B. W. Frost, and T. S. Lin. 1992. Recruitment, growth, and diel vertical migration of Euphausia pacifica in a temperate fjord. Mar. Biol. 114:219-228.
Bond, G., W. Broecker, S. Johnson, J. McManus, L. Labeyrie, J. Jouzel, and G. Bonani. 1993. Correlation between climate records from North Atlantic sediments and Greenland ice. Nature 365:143_147.
Booke, H. E. 1981. The conundrum of the stock concept–Are nature and nurture definable in fishery science? Can. J. Fish. Aquat. Sci. 38:1479-1480.
Bourne, N. F., and K. K. Chew. 1994. The present and future for molluscan shellfish resources in the Strait of Georgia-Puget Sound-Juan de Fuca Strait areas. Can. Tech. Rep. Fish. Aquat. Sci. 1948:205-216.
Buckley, M. B. 1997. Substrate associated recruitment of juvenile Sebastes in artificial reef and natural habitats in Puget Sound and the San Juan Archipelago, Washington. Wash. Dep. Fish Wildl. Tech. Rep. #RAD97-06, 320 p.
Buckley, R. M., and G. J. Hueckel. 1985. Biological processes and ecological development on an artificial reef in Puget Sound, Washington. Bull. Mar. Sci. 37:50-69.
Buonacoursi, B. P., C. A. Kimbrell, E. A. Lynn, and R. D. Vetter. (In prep.). Patterns of larval dispersal in copper rockfish (Sebastes caurinus) inferred from genetic population structure: open coast versus inland waterways.
Burns, R. 1985. The shape and form of Puget Sound. Washington Sea Grant Program, University of Washington Press, Seattle, WA, 100 p.
Busby, P. J., O. W. Johnson, T. C. Wainwright, F. W. Waknitz, and R. S. Waples. 1993. Status review for Oregon s Illinois River winter steelhead. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-10, 85 p.
Busby, P. J., T. C. Wainwright, G. J. Bryant, L. Leirheimer, R. S. Waples, F. W. Waknitz, and I. V. Lagomarsino. 1996. Status review of west coast steelhead from Washington, Idaho, Oregon, and California. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-27, 281 p.
Busby, P. J., T. C. Wainwright, and R. S. Waples. 1994. Status review for Klamath Mountains Province steelhead. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_ NWFSC-19, 130 p.
Calambokidis, J., and R. W. Baird. 1994. Status of marine mammals in the Strait of Georgia, Puget Sound, and Juan de Fuca Strait, and potential human effects. Can. Tech. Rep. Fish. Aquat. Sci. 1948:282-303.
Cannon, G. 1983. An overview of circulation in the Puget Sound estuarine system. U.S. Dep. Commer., NOAA Tech. Memo. ERL PMEL-48, 30 p.
Casillas, E., M. R. Arkoosh, E. Clemons, T. Hom, D. Misitano, T. K. Collier, J. E. Stein, and U. Varanasi. 1995. Chemical contaminant exposure and physiological effects in outmigrant Chinook salmon from selected urban estuaries of Puget Sound, Washington. In M. Keefe (ed.), Salmon Ecosystem Restoration: Myth and Reality; Proceedings of the 1994 Northeast Pacific Chinook and Coho Salmon Workshop, p. 86-102. The Oregon Chapter of the American Fisheries Society, P.O. Box 722 Corvallis, OR.
Casillas, E., J. E. Stein, M. R. Arkoosh, D. W. Brown, D. A. Misitano, S. L. Chan and U. Varanasi. 1993. Effects of estuarine habitat quality on juvenile salmon: I. Chemical contaminant exposure, and, II. Altered growth and immune function. In Coastal Zone_93 Proceedings, The Eighth Symposium on Coastal and Ocean Management, p. 548_562. New Orleans, LA.
Caughley, G., and A. R. E Sinclair. 1994. Wildlife ecology and management. Blackwell Scientific Publications, Boston, 334 p.
Cavalli_Sforza, L. L., and A. W. F. Edwards. 1967. Phylogenetic analysis: Models and estimation procedures. Evolution 21:550_570.
Chakraborty, R. 1980. Gene diversity analysis in nested subdivided populations. Genetics 96:721_726.
Chen, L. 1986. Meristic variation in Sebastes (Scorpaenidae) with an analysis of character association and bilateral pattern and their significance in species separation. U.S. Dep. Commer., NOAA Tech. Rep. NOAA-NMFS-45, 25 p.
Chester, A. J., D. M.. Damkaer, D. B. Dey, G. A. Heron, and J. D. Larrance. 1980. Plankton of the Strait of Juan de Fuca, 1976 - 1977. Interagency Energy/Environment R&D Program Rep. U.S. Environmental Protection Agency, Office of Environmental Engineering and Technology, Washington, D.C., EPA-600/7-80-032.
Clemens, W. A., and G. V. Wilby. 1961. Fishes of the Pacific coast of Canada. Bull. Fish. Res. Board Can. 68:443.
Collias, E. E., N. McGary, and C. A. Barnes. 1974. Atlas of physical and chemical properties of Puget Sound and its approaches. University of Washington Press, Seattle, WA, 235 p.
Crean, P. B., T. S. Murty, and J. A Stronach. 1988. Mathematical modelling of tides and estuarine circulation. In M. J. Bowman, R. T. Barber, C. N. K. Mooers, and J. A. Raven (eds.), Lecture Notes on Coastal and Estuarine Studies. Springer-Verlag, New York, NY, 471 p.
DeLacy, A. C., C. R. Hitz, and R. L. Dryfoos. 1964. Maturation, gestation, and birth of rockfish (Sebastodes) from Washington and adjacent waters. Reprinted Fish. Res. Papers, Vol. 2, No. 3:51-67.
DeLacy, A. C., B. S. Miller, and S. F. Borton. 1972. Checklist of Puget Sound fishes. Washington Sea Grant, Univ. Washington, Seattle, WA, No. WSG 72-3. 43 p.
Donnelly, R. F., and R. L. Burr. 1995. Relative abundance and distribution of Puget Sound trawl-caught demersal fishes. In Proceeding of Puget Sound Research, Bellevue, Washington, January 12-14, 1995, vol. 2, p. 860-868. Puget Sound Water Quality Authority, Olympia, WA.
Doty, D. C., R. M. Buckley, and J. E. West. 1995. Identification and protection of nursery habitats for juvenile rockfish in Puget Sound, Washington. In E. Robichaud (ed.) Proceedings of Puget Sound Research '95 Conference, p. 181-190. Puget Sound Water Quality Action Team, Olympia, WA.
Dumbauld, B. R. 1985. The distributional ecology of zooplankton in East Passage and the Main Basin of Puget Sound. Masters Thesis, Univ. Washington, Seattle, WA, 210 p.
Ebbesmeyer, C. C., and R. M. Strickland. 1995. Oyster Condition and Climate: Evidence from Willapa Bay. Publ. WSG_MR 95_02, Washington Sea Grant Program, Univ. Washington, Seattle, WA, 11 p.
Ebbesmeyer, C. C., C.A. Coomes, J. M. Cox, J. M. Helseth, L. R. Hinchey, G. A. Cannon, and C. A. Barnes. 1984. Synthesis of current measurements in Puget Sound, Washington - Volume 3: Circulation in Puget Sound: An interpretation based on historical records of currents. U.S. Dep. Commer., NOAA Tech. Memo. NOS-OMS-5, 73 p.
Ebbesmeyer, C. C., R. J. Stewart, and S. Albertson. 1998. Circulation in Southern Puget Sound's Finger Inlets: Hammersley, Totten, Budd, Eld, and Case Inlets. In Proceedings of Puget Sound Research '98 Conference, March 12-13, p. 239-258. Puget Sound Water Quality Action Team, Olympia, WA.
Embrey, S. S., and E. L. Inkpen. 1998. Water-quality assessment of the Puget Sound Basin, Washington, nutrient transportation in rivers, 1980-93. U.S. Geol. Survey, Water Resour. Investig. Rep. 97-4270.
Eschmeyer, W. N., E. S. Herald, and H. Hammon. 1983. A field guide to Pacific Coast fishes of North America. Houghton Mifflin, Boston, MA, 336 p.
Everitt, R. D., P. J. Gearin, J. S. Skidmore, and R. L. DeLong. 1981. Prey items of harbor seals and California sea lions in Puget Sound, Washington. Murrelet 62:83-86.
Fournier, D. A. 2000. AD MODEL BUILDER Version 4, for use in nonlinear modeling and statistics. Otter Research Ltd., Box 2040, Sidney, B.C. Canada V8L3S3 (copyright 199302000 by Otter Research Ltd.), 121 p.
Francis, R. C., S. R. Hare, A. B. Hollowed, and W. S. Wooster. 1998. Effects of interdecadal climate variability on the oceanic ecosystems of the NE Pacific. Fish. Oceanogr. 7:1_21.
Fresh, K. L., R. D. Cardwell, and R. R. Koons. 1981. Food habits of Pacific salmon, baitfish, and their potential competitors and preditors in the marine waters of Washington, August 1978 to September 1979. Wash. Dep. Fish. Prog. Rep. No. 145. Olympia, WA, 57 p.
Giles, S. L., and J. R. Cordell. 1998. Zooplankton composition and abundance in Budd Inlet, Washington. In Proceedings of Puget Sound Research '98 Conference, March 12-13, p. 634-642. Puget Sound Water Quality Action Team, Olympia, WA.
Gilpin, M. E., and M. E. Soulé. 1986. Minimum viable populations: Processes of species extinction. In M. E. Soulé (ed.), Conservation biology: The science of scarcity and diversity, p. 19_34. Sinauer Associates, Sunderland, MA.
Gowan, R. E. 1983. Population dynamics and exploitation rates of rockfish (Sebastes spp.) in central Puget Sound, Washington. Ph.D. Thesis, Univ. Washington, Seattle, 90 p.
Graumlich, L. J., and L. B. Brubaker. 1986. Reconstruction of annual temperature (1590 - 1979) for Longmire, Washington, derived from tree rings. Quat. Res. 25:223-234.
Gustafson, R. G., T. C. Wainwright, G. A. Winans, F. W. Waknitz, L. T. Parker, and R. S. Waples. 1997. Status review of sockeye salmon from Washington and Oregon. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-33, 282 p.
Gutjahr-Gobell, R.E., D. E. Black, L. J. Mills, R. J. Pruell, B. K. Taplin, and S. Jayaraman. 1999. Feeding the mummichog (Fundulus heteroclitus) a diet spiked with non-ortho- and mono-ortho-substituted polychlorinated biphenyls: Accumulation and effects. Environ. Toxicol. Chem. 18:699-707.
Haldorson, L., and L. J. Richards. 1986. Post_larval copper rockfish in the Strait of Georgia: Habitat use, feeding, and growth in the first year. In Proc. Int. Rockfish Symposium. Alaska Sea Grant College Program, Anchorage, AL, 87_2:129_141.
Hare, S. R., and N. J. Mantua. 2000. Empirical evidence for North Pacific regime shifts in 1977 and 1989. J. Prog. Oceanogr. 47(2-4):103-146.
Hard, J. J., R. G. Kope, W. S. Grant, F. W. Waknitz, L.T. Parker, and R. S. Waples. 1996. Status review of pink salmon from Washington, Oregon, and California. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-25, 131 p.
Harrison, P. J., D. L. Mackas, B. W. Frost, R. W. Macdonald, and E. A. Crecelius. 1994. An assessment of nutrients, plankton, and some pollutants in the water column of Juan de Fuca Strait, Strait of Georgia and Puget Sound, and their transboundary transport. Can. Tech. Rep. Fish. Aquat. Sci. 1948:138-172.
Hart, J. L. 1973. Pacific Fishes of Canada. Bull. Fish. Res. Board Can. 180, 730 p.
Hillis, D. M., C. Moritz, and B. K. Mable (eds.). 1996. Molecular Systematics. Second edition. Sinauer Associates, Sunderland, MA, 588 p.
Holbrook, J. R., R. D. Muench, D. G. Kachel, and C. Wright. 1980. Circulation of the Strait of Juan de Fuca: Recent oceanographic observations in the Eastern Basin. U.S. Dep. Commer., NOAA Tech. Rep. ERL 412-PMEL-33, 42 p.
Hueckel, G. J., and R. L. Slayton. 1982. Fish foraging on an artificial reef in Puget Sound, Washington. Mar. Fish. Rev. 44:38_44.
Hutchinson, I. 1988. Estuarine marsh dynamics in the Puget Trough–implications for habitat management. In Proceedings of the first annual meeting on Puget Sound research, p. 455-462. Puget Sound Water Quality Authority, Seattle, WA.
Ihssen, P. E., H. E. Booke, J. M. Casselmann, J. M. McGlade, N. R. Payne, and F. M. Utter. 1981. Stock identification: materials and methods. Can. J. Fish. Aquat. Sci. 38:1838-1855.
Imbrie, J., J. D. Hays, D. G. Martinson, A. McIntyre, A. C. Mix, J. J. Morley, N. G. Pisias, W. L. Prell, and N. J. Shackleton. 1984. The orbital theory of Pleistocene climate: Support from a revised chronology of the marine F18O record. In A. L. Berger, (ed.), Milankovitch and Climate, Part 1, p. 269_305. D. Reidel, Norwell, MA.
Johnson, L. L. Unpubl. data. An analysis in support of sediment quality thresholds for polycyclic aromatic hydrocarbons (PAHs) to protect estuarine fish. Internal report, NMFS White Paper. Memo from Tracy K. Collier, through John E. Stein, to Steven Landino. July 26, 2000. Northwest Fisheries Science Center, NMFS, NOAA. Seattle, WA, 33 p. (Available at http://www.nwfsc.noaa.gov/research/divisions/ec/ecotox/whitepaperspdf/pcbwp10_2000.pdf ).
Johnson, O. W., T. A. Flagg, D. J. Maynard, G. B. Milner, and F. W. Waknitz. 1991. Status review for lower Columbia River coho salmon. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-NWFSC-202, 94 p.
Johnson, O. W., W. S. Grant, R. G. Kope, K. Neely, F. W. Waknitz, and R. S. Waples. 1997. Status review of chum salmon from Washington, Oregon, and California. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-32, 280 p.
Johnson, O. W., M. H. Ruckelshaus, W. S. Grant, F. W. Waknitz, A. M. Garrett, G. J. Bryant, K. Neely, and J. J. Hard. 1999. Status review of coastal cutthroat trout from Washington, Oregon, and California. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-37, 292 p.
Johnson, O. W., R. S. Waples, T. C. Wainwright, K. G. Neely, F. W. Waknitz, and L. T. Parker. 1994. Status review for Oregon's Umpqua River sea_run cutthroat trout. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-15, 122 p.
L Krahn, M.M., G.M. Ylitalo, J. Buzitis, S. L. Chan, and U. Varanasi. 1993. Rapid high performance liquid chromatographic methods that screen for aromatic compounds in environmental samples. J. Chromat. 642:15-32.
Kozloff, E. N. 1987. Marine invertebrates of the Pacific Northwest. University of Washington Press, Seattle, WA, 511 p.
Kronlund, A. R., K. L. Yamanaka, and G. D. Workman. 1999. Inshore rockfish stock assessment for the West coast of Canada in 1998 and recommendations for 1999/2000. DFO Research Document 99/58, 54 p.
Kruskal, J. B. 1964. Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis. Psychrometrika 28:1_27.
Larkin, P. A. 1972. The stock concept and management of Pacific salmon. In R. C. Simon and P. S. Larkin (eds.), The stock concept in Pacific salmon, p. 11-15. H. R. MacMillan Lectures in Fisheries, University of British Columbia, Vancouver, B.C., Canada.
Larson, R. J. 1980a. Competition, habitat selection, and the bathymetric segregation of two rockfish species. Ecol. Monogr. 50:221-239.
Larson, R. J. 1980b. Territorial behavior of the black and yellow rockfish and gopher rockfish (Scorpaenidae, Sebastes). Mar. Bio. 58:111-122.
Lawson, P. W. 1993. Cycles in ocean productivity, trends in habitat quality, and the restoration of salmon runs in Oregon. Fisheries 18(8):6_10.
Lea, R. N. 1992. Rockfishes: overview. In W. S. Leet, C. M. Dewees and C. W. Hougen (eds.) California's living marine resources and their utilization, p. 114_116. California Sea Grant Extension Publication, UCSGEP_92_12.
Lenarz, W. H., D. A. Ven Tresca, W. M. Graham, F. B. Schwing, and F. Chavez. 1995. Explorations of El Nino events and associated biological population dynamics off central California. Calif. Coop. Ocean. Fish. Investig. Rep. 36:106-119.
Levings, C. D., and R. M. Thom. 1994. A description of the fish community of the Squamish River estuary, British Columbia: Relative abundance, seasonal changes and feeding habits of salmonids. Can. Fish. Mar. Serv. Manuscr. Rep. 1475, 63 p.
Lie, U. 1968. A quantitative study of benthic infauna in Puget Sound, Washington, USA, in 1963-1964. Fiskeridir. Skr. Ser. Havunders 14:235-556.
Lie, U. 1974. Distribution and structure of benthic assemblages in Puget Sound, Washington. Mar. Biol. 26:203-223.
Llansó, R. J., S. Aasen, and K. Welch. 1998. Marine Sediment Monitoring Program, II. Distribution and structure of benthic communities in Puget Sound 1989-1993. Wash. Dep. Ecol. Publ. No. 98-328, 150 p.
Love, M. S. 1996. Probably more than you want to know about the fishes of the Pacific coast. Really Big Press, Santa Barbara, CA, 215 p.
Love, M. S., and K. Johnson. 1998. Aspects of the life histories of grass rockfish, Sebastes rastrelliger, and brown rockfish, S. auriculatus, from southern California. Fish. Bull. 87:100-109.
Love, M. S., M. H. Carr, and L. J. Haldorson. 1991. The ecology of substrate_associated juveniles of the genus Sebastes. Environ. Biol. Fish. 30:225_243.
Love, M. S., J. E. Caselle, and K. Herbinson. 1998. Declines in nearshore rockfish recruitment and populations in the southern California Bight as measured by impingement rates in coastal electric power generating stations. Fish. Bull. 96:492-501.
Mahaffy, M. S., D. R. Nysewander, K. Vermeer, T. R. Wahl, and P. E. Whitehead. 1994. Status, trends, and potential threats related to birds in the Strait of Georgia, Puget Sound, and Juan de Fuca Strait. Can. Tech. Rep. Fish. Aquat. Sci. 1948:256-281.
Malins, D. C., B. B. McCain, D. W. Brown, A. K. Sparks, H. O. Hodgins, and S. L. Chan. 1982. Chemical contaminants and abnormalities in fish and invertebrates from Puget Sound. U.S. Dep. Commer., NOAA Tech. Memo OMPA-19, 168 p.
Mantua, N. J., S. R. Hare, Y. Zhang, J. M. Wallace, and R. C. Francis. 1997. A Pacific interdecadal climate oscillation with impacts on salmon production. Bull. Am. Meteorol. Soc. 78:1069-1079.
Marine Recreational Fisheries Statistics Survey (MRFSS). 2000. Personal communications for the National Marine Fisheries Service, Fisheries Statistics and Economics Division, Silver Spring, MD. (Available at website http://www.st.nmfs.gov/st1/.)
Mason, J. E. 1998. Declining rockfish lengths in Monterey Bay, California, recreational fishery, 1959-94. Mar. Fish. Rev. 60(3):15-28.
Matthews, K. R. 1987. Habitat utilization by recreationally-important bottomfish in Puget Sound: An assessment of current knowledge and future needs. Wash. Dep. Fish. Prog. Rep. No. 264, 57 p.
Matthews, K. R. 1988. Habitat use and movement patterns of copper, quillback, and brown rockfishes in Puget Sound, Washington. Ph.D. Thesis. Univ. Washington, Seattle, WA, 138 p.
Matthews, K. R. 1990a. An experimental study of the habitat preferences and movement patterns of copper, quillback, and brown rockfishes (Sebastes spp.). Environ. Biol. Fish. 29:161_178.
Matthews, K. R. 1990b. A comparative study of habitat use by young_of_the_year, and adult rockfishes on four habitat types in central Puget Sound. Fish. Bull. 88:223_239.
Matthews, K. R. 1990c. A telemetric study of the home ranges and homing routes of copper and quillback rockfishes on shallow rocky reefs. Can. J. Zool. 68:2243_2250.
Matthews, G. M., and R. S. Waples. 1991. Status review for Snake River spring and summer chinook salmon. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_F/NW-200, 75 p.
Maxell, B. A., and K. A. Miller. 1996. Demographic studies of the annual kelps Nereocystis luetkeana and Costaria costata (Laminariales, Phaeophyta) in Puget Sound, Washington. Bot. Mar. 39:479_489.
Meador, J. P. Unpubl. data. An analysis in support of tissue and sediment based threshold concentrations of polychlorinated biphenyls (PCBs) to protect juvenile salmonids listed by the Endangered Species Act. Internal report, NMFS White paper. Memo from Tracy K. Collier, through John E. Stein, to Steven Landino. September, 2000. Northwest Fisheries Science Center, NMFS, NOAA, Seattle, WA, 48 p. (Available at http://research.nwfsc.noaa.gov/ec/ecotox/Publications/WhitepapersPDF/PCBWP10 2000.PDF.)
Methot, R. D. 2000. Technical description of the stock synthesis assessment program. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-NWFSC-43, 46 p.
Miller, B. S., and S. F. Borton. 1980. Geographical distribution of Puget Sound fishes: maps and data source sheets. Volume 1. Family Petromysontidae (Lampreys) through Family Syngnathidae (Pipefishes). Fish. Res. Inst., Univ. Washington, Seattle, WA, 681 p.
Miller, D. J., and R. N. Lea. 1972. Guide to the coastal marine fishes of California. Calif. Dep. Fish Game Fish. Bull. 157:249.
Murie, D. J. 1995. Comparative feeding ecology of two sympatric rockfish congeners, Sebastes caurinus (copper rockfish) and S. maliger (quillback rockfish). Mar. Biol. 124:341_353.
Murie, D. J., D. C. Parkyn, B. G. Clapp, and G. G. Krause. 1994. Observations on the distribution and activities of rockfish, Sebastes spp., in Saanich Inlet, British Columbia, from the Pisces IV submersible. Fish. Bull. 92:313_323.
Musick, J. A., M. M. Harbin, S. A. Berkeley, G. H. Burgess, A. M. Eklund, L. Findley, R. G. Gilmore, J. T. Golden, D. S. Ha, G. R. Huntsman, J. C. McGovern, S. J. Parker, S. G. Poss, E. Salo, T. W. Schmidt, G. R. Sedberry, H. Weeks, and S. G. Wright. 2000. Marine, estuarine and diadromous fish stocks at risk of extinction in North America (exclusive of Pacific salmonids), p. 6-30. Fisheries 25:11.
Myers, J. M., R. G. Kope, G. J. Bryant, D. Teel, L. J. Lierheimer, T. C. Wainwright, W. S. Grant, F. W. Waknitz, K. Neeley, S. T. Lindley, and R. S. Waples. 1998. Status review of chinook salmon from Washington, Idaho, Oregon, and California. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC-35, 443 p.
Myers, M. S., L. L. Johnson, O. P. Olson, C. M. Stehr, B. H. Horness, T. K. Collier, and B. B. McCain. 1998. Toxicopathic hepatic lesions as biomarkers of chemical contaminant exposure and effects in marine bottomfish species from the Northeast and Pacific coasts, U.S.A. Mar. Poll. Bull. 37:92-113.
Narum, S. 2000. Assortative mating and genetic structure of gopher rockfish, (S. carnatus) and black-and-yellow rockfish (S. chrysomelas): A case of incipient speciation. Masters Thesis, Univ. San Diego, CA, 90 p.
National Marine Fisheries Service (NMFS). 1999. Listing endangered and threatened species and designating critical habitat: petition to list eighteen species of marine fishes in Puget Sound, Washington. Federal Register (Docket No. 990614161-9161-01; 21 June 1999) 64(118):33037-33040.
National Research Council (NRC). 1995. Science and the Endangered Species Act. National Academy of Sciences, National Academy Press, Washington, D.C., 162 p.
Nei, M. 1972. Genetic distance between populations. Am. Nat. 106:282_292.
Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. U.S.A. 70:3321_3323.
Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583_590.
Nelson, K., and M. Soulé. 1987. Genetical conservation of exploited fishes. In N. Ryman and F. Utter (eds.), Population genetics & fishery management, p. 345_368. University of Washington Press, Seattle, WA.
Neushel, M. 1967. Studies of subtidal marine vegetation in Western Washington. Ecology 48:83-93.
Nichols, F. H. 1988. Long-term changes in a deep Puget Sound benthic community: Local or basin wide? In Proceedings First Annual Meeting on Puget Sound Research, March 18-19, 1988, p. 65-71. Puget Sound Water Quality Authority, Olympia, WA.
Ohman, M. D. 1990. The demographic benefits of diel vertical migration of zooplankton. Ecol. Monogr. 60:257_281.
Pacunski, R. E., and W. A. Palsson. 1998. The distribution and abundance of nearshore rocky-reef habitats and fishes in Puget Sound. In Proceedings of Puget Sound Research '98 Conference, March 12-13, p. 545-554. Puget Sound Water Quality Action Team, Olympia, WA.
Palsson, W. A. 1998. Monitoring the response of rockfish to protected areas. In M. M. Yoklavich (ed.), Marine Harvest Refugia for West Coast Rockfish, p. 64-73. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-SWFSC-255, 159 p.
Palsson, W. A., and R. E. Pacunski. 1995. The response of rocky reef fishes to harvest refugia in Puget Sound. In E. Robichaud (ed.), Puget Sound Research ’95 Proceedings, Bellevue, WA, p. 224-234. Puget Sound Water Quality Authority.
Palsson, W. A., J. C. Hoeman, G. G. Bargmann, and D. E. Day. 1997. 1995 status of Puget Sound bottomfish stocks (revised). Report No. MRD97-03, Wash. Dep. Fish Wildl., Olympia, WA, 98 p.
Palumbi, S. R. 1994. Genetic divergence, reproductive isolation, and marine speciation. Annu. Rev. Ecol. Syst. 25:547-572.
Palumbi, S. R. 1996. Macrospatial genetic structure and speciation in marine taxa with high dispersal abilities. In J. D. Ferraris, and S. R. Palumbi (eds.), Molecular zoology: advances, strategies, and protocols, p. 101-118. Wiley-Liss, New York, NY.
Patten, B. G. 1973. Biological information on copper rockfish in Puget Sound, Washington. Trans. Amer. Fish. Soc. No. 2: 412-416.
Pearson, D. E. 2000. Data availability, landings, and length trends of California’s rockfish. Administrative Report SC-00-01. Southwest Fisheries Science Center, National Marine Fisheries Service, Tiburon, CA, 94920-1211, 94 p.
Pinnix, W. D. 1999. Climate and Coho: a Puget Sound Perspective. Masters Thesis, Univ. Wash., Seattle, 117 p.
Prince, E. D., and D. W. Gotshall. 1976. Food of the copper rockfish , Sebastes caurinus, Richardson, associated with an artificial reef in south Humboldt Bay, California. Calif. Dep. Fish Game Bull. 62:274_285.
Puget Sound Regional Council (PSRC). 1998. Population and Housing Estimates: 1998. Puget Sound Regional Council, Seattle, WA, 100 p.
Puget Sound Water Quality Action Team (PSWQAT). 1998. 1998 Puget Sound Update: Report of the Puget Sound Ambient Monitoring Program. Puget Sound Water Quality Action Team, Olympia, WA, 127 p.
Puget Sound Water Quality Action Team (PSWQAT). 2000. Toxic Contaminants. In 2000 Puget Sound Update, p. 47_58. Puget Sound Water Quality Action Team Annual Report, Olympia, WA.
Puget Sound Water Quality Action Team (PSWQAT). 2000. 2000 Puget Sound Update. Puget Sound Water Quality Action Team Annual Report. Olympia, WA, 127 p.
Puget Sound Water Quality Authority (PSWQA). 1987. Puget Sound Environmental Atlas, Volumes 1 and 2. Prepared by Evans-Hamilton, Inc. and D. R. Systems, Inc., Seattle, WA, 520 p.
Puget Sound Water Quality Authority (PSWQA). 1988. State of the Sound 1988 report. Puget Sound Water Quality Authority, Seattle, WA, 225 p.
Quinnell, S., and C. Schmitt. 1991. Abundance of Puget Sound demersal fishes: 1987 research trawl survey results. Wash. Dep. Fish. Prog. Rep. No. 286, 267 p.
Rand McNally. 1998. 1998 Commercial Atlas and Marketing Guide. Rand McNally and Company, Chicago, Il, 574 p.
Rice, C. A., M. S. Myers, M. L. Willis, B. L. French, and E. Casillas. 2000. From sediment bioassay to fish biomarker – connecting the dots using simple trophic relationships. Mar. Environ. Res. 50:527-533.
Richards, L. J. 1987. Copper rockfish (Sebastes caurinus) and quillback rockfish (Sebastes maliger) habitat in the Strait of Georgia, British Columbia. Can. J. Zool. 65:3188-3191.
Richards, L. J., and A. J. Cass. 1987. The British Columbia inshore rockfish fishery: Stock assessment and fleet dynamics of an unrestricted fishery. In Proceedings of The International Rockfish Symposium, Anchorage, AK, 1986. Alaska Sea Grant Rep. No. 87-2.
Ricker, W. E. 1972. Hereditary and environmental factors affecting certain salmonid populations. In R. C. Simon and P. S. Larkin (eds.), The stock concept in Pacific salmon, p. 19-160. H. R. MacMillan Lectures in Fisheries, University of British Columbia, Vancouver, B.C., Canada.
Roberts, R. W. 1979. Surface sediment maps of Puget Sound. Published by School of Oceanography, Univ. Washington, Seattle, WA, 12 p.
Robins, C. R., R. M. Bailey, C. E. Bond, J. R. Brooker, E. A. Lachner, R. N. Lea, and W. B. Scott. 1991. Common and scientific names of fishes from the United States and Canada. Am. Fish. Soc. Spec. Publ. 20, 183 p.
Rocha-Olivares, A., and R. D. Vetter. 1999. Effects of oceanographic circulation and the gene flow, genetic structure, and phlogeography of the rosethorn rockfish (Sebastes helvomaculatus). Can. J. Fish. Aquat. Sci. 56:803-813.
Rocha-Olivares, A., R. H. Rosenblatt, and R. D. Vetter. 1999. Molecular evolution, systematics, and zoogeography of the rockfish subgenus Sebastomus (Sebastes, Scorpaenidae) based on mitochondrial cytochrome b and control region sequences. Mol. Phylogenet. Evol. 11(3):441-458.
Rocha-Olivares, A., R. H. Rosenblatt, and R. D. Vetter. 1999a. Cryptic species of rockfishes (Sebastes; Scorpaenidae) in the Southern Hemisphere inferred from motochondrial lineages. J. Hered. 90:404-411.
Rocha-Olivares, A., C. A. Kimbrell, B. J. Eitner, and R. D. Vetter. 1999b. Evolution of a mitochondrial cytochrome b gene sequence in the species-rich genus Sebastes (Teleostei, Scorpaenidae) and its utility in testing the monophyly of the subgenus Sebastomus. Mol. Phylogenet. Evol. 11:426-440.
Rogers, J. S. 1991. A comparison of the suitability of the Rogers, modified Rogers, Manhattan and Cavalli_Sforza and Edwards distances for inferring phylogenetic trees from allele frequencies. Syst. Zool. 40:63_73.
Rosenthal, R. J., V. Moran_O'Connell, and M. C. Murphy. 1988. Feeding ecology of ten species of rockfishes (Scorpaenidae) from the Gulf of Alaska. Alsk. Dep. Fish Game 74:16_36.
Ryman, N., and L. Laikre. 1991. Effects of supportive breeding on the genetically effective population size. Conserv. Biol. 5:325_329.
Ryman, N., F. Utter, and K. Hindar. 1995. Introgression, supportive breeding, and genetic conservation. In J. D. Ballou, M. Gilpin, and T. J. Foose (eds.), Population management for survival and recovery, p. 341_365. Columbia University Press, New York, NY.
Saitou, N., and M. Nei. 1987. The neighbor_joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406_425
Schmitt, C., J. Schweigert, and T. P. Quinn. 1994. Anthropogenic influences on fish populations of the Georgia Basin. In R. C. H. Wilson, R. J. Beamish, F. Aitkens, and J. Bell (eds.), Review of the Marine Environment and Biota of Strait of Georgia, Puget Sound, and Juan de Fuca Strait, p. 218-252. Can. Tech. Rep. Fish. Aquat. Sci.1948, 390 p.
Seeb, L. W. 1986. Biochemical systematics and evolution of the scorpaenid genus Sebastes Ph.D. Thesis, Univ. Washington, Seattle, WA, 176 p.
Seeb, L. W. 1998. Gene flow and introgression within and among three species of rockfishes, Sebastes auriculatus, S. caurinus, and S. maliger. Hered. 89:393-403.
Sewell, A. 1999. Kelp bed mapping in Washington: Preliminary results. Puget Sound Water Quality Action Team's Sound Waves 14, No. 2:1-3.
Shaffer, J. A. 1998. Kelp bed habitats of the Inland Waters of Western Washington. In Proceedings of Puget Sound Research '98 Conference, March 12-13, p. 353-362. Puget Sound Water Quality Action Team, Olympia, WA.
Shinomiya, A., and O. Ezaki. 1991. Mating habits of the rockfish Sebastes inermis. Environ. Biol. Fish. 30:15-22.
Simenstad, C. A., K. L. Fresh, and E. O. Salo. 1982. The role of Puget Sound and Washington coastal estuaries in the life history of Pacific salmon: an unappreciated function. In V. S. Kennedy (ed.), Estuarine comparisons, p. 343-364. Academic Press, Toronto, Canada.
Sneath, P. H. A., and R. R. Sokal. 1973. Numerical taxonomy. W. H. Freeman, San Francisco, CA, 573 p.
Staubitz, W. W., G. C. Bortleson, S. D. Semans, A. J. Tesoriero, and R. W. Black. 1997. Water-quality assessment of the Puget Sound Basin - Environmental setting and its implications for water quality and aquatic biota. U.S. Geol. Survey, Water Res. Investig. Rep. 97-4013, 76 p.
Stein, D., and T. J. Hassler. 1989. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Southwest): Brown rockfish, copper rockfish, and black rockfish. Wash. Dep. Fish. Bio. Rep. 82 (11.113):16.
Strickland, R. M. 1983. The Fertile Fjord. Plankton in Puget Sound. University of Washington Press, Seattle, WA, 145 p.
Swain, D. P. 1999. Changes in the distribution of Atlantic cod (Gadus morhua) in the southern Gulf of St. Lawrence _ effects of environmental change or change in environmental preferences? Fish. Oceanogr. 8:1_17.
Taylor, C. A. 1998. Phylogenetics and larval identification of rockfishes (genus Sebastes) using mitochondrial DNA techniques. Masters Thesis. San Diego State Univ., San Diego, CA, 118 p.
Thompson, G. G. 1991. Determining minimum viable populations under the Endangered Species Act. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC_198, 78 p.
Thomson, R. E. 1994. Physical oceanography of the Strait of Georgia-Puget Sound-Juan de Fuca Strait System. In R. C. H. Wilson, R. J. Beamish, F. Aitkens, and J. Bell (eds.), Review of the marine environment and biota of Strait of Georgia, Puget Sound and Juan de Fuca Strait, p. 36-98. Proceedings of the BC/Washington Symposium on the Marine Environment, January 13 & 14, 1994. Can. Tech. Rep. Fish. Aquat. Sci. 1948.
Thorson, R. M. 1980. Ice-sheet glaciation of the Puget Lowland, Washington, during the Vashon Stade (Late Pleistocene). Quat. Res. 13:303-321.
Tully, J. P., and A. J. Dodimead. 1957. Properties of the water in the Strait of Georgia, British Columbia, and influencing factors. J. Fish. Res. Board Can. 14:241-319.
Turgeon, D. D., A. E. Bogan, E. V. Coan, W. K. Emerson, W. G. Lyons, W. L. Pratt, C. F. E. Roper, A. Scheltema, F. G. Thompson, and J. D. Williams. 1988. Common and scientific names of aquatic invertebrates from the United States and Canada: mollusks. Am. Fish. Soc. Spec. Publ. 16, 277 p.
United States Fish and Wildlife Service, and National Marine Fisheries Service (USFWS-NMFS). 1996. Policy regarding the recognition of distinct vertebrate population segments under the Endangered Species Act. Federal Register (7 February 1996) 61(26):4722-4725.
Wainwright, T. C., and R. G. Kope. 1999. Methods of extinction risk assessment developed for U.S. West Coast salmon. ICES J. Mar. Sci. 56:444-448.
Waknitz, F. W., G. M.. Matthews, T. Wainwright, and G. A. Winans. 1995. Status review for mid_Columbia River summer chinook salmon. U. S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC_22, 80 p.
Waldichuck, M. 1957. Physical oceanography of the Strait of Georgia, British Columbia. J. Fish. Res. Board Can. 14:321-486.
Waples, R. S. 1987. A multispecies approach to the analysis of gene flow in marine shore fishes. Evolution 41:385-400.
Waples, R. S. 1991a. Definition of "species" under the Endangered Species Act: Application to Pacific salmon. U.S. Dep. Commer., NOAA Tech. Memo. NMFS-F/NWC-194, 29 p.
Waples, R. S. 1991b. Pacific salmon, Oncorhynchus spp., and the definition of "species" under the Endangered Species Act. Mar. Fish. Rev. 53(3):11-22.
Waples, R. S. 1995. Evolutionary significant units and the conservation of biological diversity under the Endangered Species Act. Am. Soc. Fish. Symp. 17:8-27.
Waples, R. S. 1998. Separating the wheat from the chaff: Patterns of genetic differentiation in high gene flow species. J. Hered. 89:438-450.
Waples, R. S., and C. Do. 1994. Genetic risk associated with supplementation of Pacific salmonids: Captive broodstock programs. Can. J. Fish. Aquat. Sci. 51 (Suppl. 1):310-329.
Washington Department of Ecology (WDOE). 1998. Marine Sediment Monitoring Program, I. Chemistry and Toxicity Testing 1989_1995. Wash. Dep. Ecol., Olympia, WA, Publ. No. 98_323, 200 p.
Washington Department of Ecology (WDOE). 1999. Data from Marine Water Quality Monitoring Program as of August 1999. Wash. Dep. Ecol., Olympia, WA. (Available at Department of Ecology website http://www.ecy.wa.gov/programs/eap/mar_wat/mwm_intr.html )
Washington Department of Natural Resources (WDNR). 1998. Our Changing Nature: Natural Resource Trends in Washington State. Wash. Dep. Nat. Res., Olympia, WA, 75 p.
Weitkamp, L. A., T. C. Wainwright, G. J. Bryant, G. B. Milner, D. J. Teel, R. G. Kope, and R. S. Waples. 1995. Status review of coho salmon from Washington, Oregon, and California. U.S. Dep. Commer., NOAA Tech. Memo. NMFS_NWFSC_24, 258 p.
West, J. E. 1997. Protection and restoration of marine life in the inland waters of Washington State. Puget Sound/Georgia Basin Environmental Report Series: Number 6. Puget Sound Water Quality Action Team, Olympia, WA, 144 p.
West, J. E., and S. M. O’Neill. 1995. Accumulation of mercury and polychlorinated biphenyls in quillback rockfish (Sebastes maliger) from Puget Sound, Washington. In Proceedings of Puget Sound Research, Bellevue, Washington, January 12-14, 1995, vol. 2, p. 666-677. Puget Sound Water Quality Authority, Olympia, WA.
West, J. E., and S. M. O’Neill. 1998. Persistent pollutants and factors affecting their accumulation in rockfishes (Sebastes spp.) from Puget Sound, Washington. In Puget Sound Research ’98 Proceedings, Bellevue, WA, p. 336-345. Puget Sound Water Quality Authority.
West, J. E., R. M. Buckley, and D. C. Doty. 1994. Ecology and habitat use of juvenile rockfishes (Sebastes spp.) associated with artificial reefs in Puget Sound, Washington. Bull. Mar. Sci. 55:344_350.
Wiens, J. A., and J. M. Scott. 1975. Model estimation of energy flow in Oregon coastal seabird populations. Condor 77:439-449.
Wilcove, D. S., M. McMillan, and K. C. Winston. 1993. What exactly is an endangered species? An analysis of the U.S. endangered species list: 1985-1991. Conserv. Biol. 7:87-93.
Winter, K. F., K. Banse, and G. C. Anderson. 1975. The dynamics of phytoplankton blooms in Puget Sound, a fjord in the Northwestern United States. Mar. Biol. 29:139-176.
Wright, S. 1978. Evolution and the genetics of populations: variability within and among natural populations. University of Chicago Press, Chicago, IL, 580 p.
Wright, S. 1999. Petition to the Secretary of Commerce to list as threatened or endangered 18 "species/populations" of "Puget Sound" marine fishes and to designate critical habitat. Petition to the U.S. National Marine Fisheries Service, February 1999, 32 p.
Yamanaka, K. L., and A. R. Kronlund. 1997. Inshore rockfish stock assessments for the west coast of Canada in 1997 and recommended yield options for 1998. DFO Research Document 97/133, 37 p.
Zar, J. H. 1984. Biostatistical analysis. Prentice Hall, Englewood Cliffs, NJ, 718 p.