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33 record(s) found.
Ward, E. J., K. Oken, K. A. Rose, S. Sable, K. Watkins, M. D. Scheuerell, E. E. Holmes. 2018. Applying spatiotemporal models to monitoring data to quantify fish population responses to the Deepwater Horizon oil spill in the Gulf of Mexico. Environmental Monitoring and Assessment.
Tolimieri, N., E. E. Holmes, G. Williams, R. Pacunski, D. Lowry. 2017. Population assessment using multivariate time-series analysis: A case study of rockfishes in Puget Sound. Ecology and Evolution, 7:2846-2860. doi:10.1002/ece3.2901
Ford, M. J., K. Barnas, T. Cooney, L. G. Crozier, M. Diaz, J. J. Hard, E. E. Holmes, D. M. Holzer, R. G. Kope, P. W. Lawson, M. Liermann, J. M. Myers, M. Rowse, D. J. Teel, D. M. Van Doornik, T. C. Wainwright, L. A. Weitkamp, M. Williams. 2015. Status review update for Pacific salmon and steelhead listed under the Endangered Species Act: Pacific Northwest. Report of the National Marine Fisheries Service, Northwest Fisheries Science Center.
Keith, D.M., H.R. Akcakaya, S.H.M. Butchart, B. Collen, N. K. Dulvy, E. E. Holmes, J. A. Hutchings, D. Keinath, M. K. Schwartz, A. O. Shelton, and R. S. Waples. 2015. Temporal correlations in population trends: Conservation implications from time-series analysis of diverse animal taxa. Biological Conservation 192:247-257.
Hampton, S. E., E. E. Holmes, L. P. Scheef, M. D. Scheuerell, S. L. Katz, D. E. Pendleton, E. J. Ward. 2013. Quantifying effects of abiotic and biotic drivers on community dynamics with multivariate autoregressive (MAR) models. Ecology, 94(12):2663-2669.
Ford, M. J., M. A. Bellman, S. Copps, C. K. Emmons, J. Drake, T. P. Good, R. G. Gustafson, M. B. Hanson, G. Hanshew, E. E. Holmes. 2012. Risk assessment of U.S. West Coast groundfish fisheries to threatened and endangered marine species. Report of the National Marine Fisheries Service, Northwest Fisheries Science Center. Seattle, Washington.
Holmes, E. E., E. J. Ward, K. Wills. 2012. MARSS: multivariate autoregressive state-space models for analyzing time-series data. R Journal, 4(1):11-19.
Mongillo TM, Holmes EE, Noren DP, VanBlaricom GR and others (2012) Predicted polybrominated diphenyl ether (PBDE) and polychlorinated biphenyl (PCB) accumulation in southern resident killer whales. Mar Ecol Prog Ser 453:263-277
Scheef, L. P., D. E. Pendleton, S. E. Hampton, S. L. Katz, E. E. Holmes, M. D. Scheuerell, D. G. Johns. 2012. Assessing marine plankton community structure from long-term monitoring data with multivariate autoregressive (MAR) models: a comparison of fixed station vs. spatially distrubted sampling data. Limnology and Oceanography: Methods, 10:54-64.
Ward, E. J., B. Semmens, E. E. Holmes, K. C. Balcomb III. 2011. Effects of Multiple Levels of Social Organization on Survival and Abundance. Conservation Biology, 25(2):350-355. doi:10.1111/j.1523-1739.2010.01600.x
Drake, J., E. A. Berntson, J. M. Cope, R. G. Gustafson, E. E. Holmes, P. S. Levin, N. Tolimieri, R. S. Waples, S. Sogard, G. D. Williams. 2010. Status review of five rockfish species in Puget Sound, Washington: Bocaccio (Sebastes paucispinis), canary rockfish (S. pinniger), yelloweye rockfish (S. ruberrimus), greenstriped rockfish (S. elongatus), and redstripe rockfish (S. proriger). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-108.
Ward, E. J., H. Chirakkal, M. Gonzalez-Suarez, D. Aurioles-Gamboa, E. E. Holmes, L. Gerber. 2010. Applying multivariate-state-space models to detect spatial clustering of California sea lions in the Gulf of California, Mexico. Journal of Applied Ecology, 47:47-56.
Hinrichsen, R. A. and E. E. Holmes. 2009. Using multivariate state-space models to study spatial structure and dynamics. In Spatial Ecology (editors Robert Stephen Cantrell, Chris Cosner, Shigui Ruan). CRC/Chapman Hall.
Hauser, D. D., M. G. Logsdon, E. E. Holmes, G. R. VanBlaricom, R. W. Osborne. 2007. Summer distribution patterns of Southern resident killer whales (Orcinus orca): core areas and spatial segregation of social groups. Marine Ecology Progress Series, 351:301-310.
Holmes, E. E., J. L. Sabo, S. V. Viscido, W. Fagan. 2007. A Statistical Approach to quasi-extinction forecasting. Ecology Letters, 10:1182--1198.
Gustafson, R. G., J. Drake, M. J. Ford, J. M. Myers, E. E. Holmes, R. S. Waples. 2006. Status review of Cherry Point Pacific herring (Clupea pallasii) and updated status review of the Georgia Basin Pacific herring distinct population segment under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-76.
Holmes, E. E., W. Fagan, J. J. Rango, A. Folarin, J. A. Sorensen, J. E. Lippe, N. E. McIntyre. 2005. Cross validation of quasi-extinction risks from real time series: An examination of diffusion approximation methods. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-67, 37 p.
Holmes, E. E., B. Semmens. 2004. Population viability analysis for metapopulations: a diffusion approximation approach. Pages 565-598 in Hanski, I., O. E. Gaggiotti. (Eds.) Ecology, Genetics, and Evolution of Metapopulations. Elsevier Press.
Holmes, E. E., A. E. York. 2003. Using age structure to detect impacts on threatened populations: A case study with steller sea lions Using age structure to detect impacts on threatened populations: A case study with steller sea lions. Conservation Biology, 17:1794-1806.
McClure, M. M., E. E. Holmes, B. L. Sanderson, C. E. Jordan. 2003. A large-scale, multispecies status assessment: anadromous salmonids in the Columbia River Basin. Ecological Applications, 13(4):964-989.
Holmes, E. E., P. Kareiva. 2000. Using single species measurements to anticipate community consequences of environmental contaminants. Page 344 in Albers, P., G. Heinz, H. Ohlendorf. (Eds.) Environmental Contaminants and Terrestrial Vertebrates: Effects on Populations, Communities, and Ecosystems. Special Publication of SETAC Press.