Northwest Fisheries Science Center

NWFSC Staff Directory

NWFSC Publications for Elizabeth Holmes

(See also curriculum vitae.)

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32 record(s) found.

Tolimieri, N., E. E. Holmes, G. Williams, R. Pacunski, D. Lowry. 2017. Population assessment using multivariate time-series analysis: A case study of rockfishes in Puget Sound. Ecology and Evolution, 7:2846-2860. doi:10.1002/ece3.2901Go to metadata icon

Ford, M. J., K. Barnas, T. Cooney, L. G. Crozier, M. Diaz, J. J. Hard, E. E. Holmes, D. M. Holzer, R. G. Kope, P. W. Lawson, M. Liermann, J. M. Myers, M. Rowse, D. J. Teel, D. M. Van Doornik, T. C. Wainwright, L. A. Weitkamp, M. Williams. 2015. Status Review Update for Pacific Salmon and Steelhead Listed under the Endangered Species Act:  Pacific Northwest. Nationa Marine Fisheries Service, Northwest Fisheries Science Center.Go to metadata icon

Keith, D.M., H.R. Akcakaya, S.H.M. Butchart, B. Collen, N. K. Dulvy, E. E. Holmes, J. A. Hutchings, D. Keinath, M. K. Schwartz, A. O. Shelton, and R. S. Waples.  2015.  Temporal correlations in population trends:  Conservation implications from time-series analysis of diverse animal taxa.  Biological Conservation 192:247-257.Go to metadata icon

See, K. E., E. E. Holmes. 2015. Reducing bias and improving precision in species extinction forecasts. Ecological Applications.Go to metadata icon

Ward, E. J., E. E. Holmes, J. T. Thorson. 2014. Complexity is costly: comparing parametric and non-parametric methods for short-term population forecasting. Oikos, 123(6):652-661.Go to metadata icon

Hampton, S. E., E. E. Holmes, L. P. Scheef, M. D. Scheuerell, S. L. Katz, D. E. Pendleton, E. J. Ward. 2013. The next link will exit from NWFSC web site Quantifying effects of abiotic and biotic drivers on community dynamics with multivariate autoregressive (MAR) models. Ecology, 94(12):2663-2669.Go to metadata icon

Ford, M. J., M. A. Bellman, S. Copps, C. K. Emmons, J. Drake, T. P. Good, R. G. Gustafson, M. B. Hanson, G. Hanshew, E. E. Holmes. 2012. Risk assessment of U.S. West Coast groundfish fisheries to threatened and endangered marine species. Report of the National Marine Fisheries Service, Northwest Fisheries Science Center. Seattle, Washington.Go to metadata icon

Holmes, E. E., E. J. Ward, K. Wills. 2012. The next link will exit from NWFSC web site MARSS: multivariate autoregressive state-space models for analyzing time-series data. R Journal, 4(1):11-19.Go to metadata icon

The next link will exit from NWFSC web site Mongillo TM, Holmes EE, Noren DP, VanBlaricom GR and others (2012) Predicted polybrominated diphenyl ether (PBDE) and polychlorinated biphenyl (PCB) accumulation in southern resident killer whales. Mar Ecol Prog Ser 453:263-277Go to metadata icon

Scheef, L. P., D. E. Pendleton, S. E. Hampton, S. L. Katz, E. E. Holmes, M. D. Scheuerell, D. G. Johns. 2012. The next link will exit from NWFSC web site Assessing marine plankton community structure from long-term monitoring data with multivariate autoregressive (MAR) models: a comparison of fixed station vs. spatially distrubted sampling data. Limnology and Oceanography: Methods, 10:54-64.Go to metadata icon

Ward, E. J., B. Semmens, E. E. Holmes, K. C. Balcomb III. 2011. Effects of Multiple Levels of Social Organization on Survival and Abundance. Conservation Biology, 25(2):350-355. doi:10.1111/j.1523-1739.2010.01600.xGo to metadata icon

Drake, J., E. A. Berntson, J. M. Cope, R. G. Gustafson, E. E. Holmes, P. S. Levin, N. Tolimieri, R. S. Waples, S. Sogard, G. D. Williams. 2010. Status review of five rockfish species in Puget Sound, Washington:  Bocaccio (Sebastes paucispinis), canary rockfish (S. pinniger), yelloweye rockfish (S. ruberrimus), greenstriped rockfish (S. elongatus), and redstripe rockfish (S. proriger). U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-108.Go to metadata icon

Viscido, S. V., E. E. Holmes. 2010. Statistical modelling of communities and ecosystems using the LAMDA software tool. Environmental Modelling & Software, 25(12):1905-1908.Go to metadata icon

Ward, E. J., H. Chirakkal, M. Gonzalez-Suarez, D. Aurioles-Gamboa, E. E. Holmes, L. Gerber. 2010. Applying multivariate-state-space models to detect spatial clustering of California sea lions in the Gulf of California, Mexico. Journal of Applied Ecology, 47:47-56.Go to metadata icon

Hinrichsen, R. A. and E. E. Holmes. 2009. Using multivariate state-space models to study spatial structure and dynamics. In Spatial Ecology (editors Robert Stephen Cantrell, Chris Cosner, Shigui Ruan). CRC/Chapman Hall.Go to metadata icon

Ward, E. J., E. E. Holmes, K. C. Balcomb III. 2009. Evidence of reproductive senescence and prey limitation in killer whales.Go to metadata icon

Ward, E. J., E. E. Holmes. 2009. The Role Of Menopause And Reproductive Senescence In A Long-Lived Social Mammal. Frontiers in Zoology.Go to metadata icon

Ellner, S. P. and E. E. Holmes. 2008. Resolving the debate on when extinction risk is predictable. Ecology Letters 11: E1E5.Go to metadata icon

Hauser, D. D., M. G. Logsdon, E. E. Holmes, G. R. VanBlaricom, R. W. Osborne. 2007. The next link will exit from NWFSC web site Summer distribution patterns of Southern resident killer whales (Orcinus orca): core areas and spatial segregation of social groups. Marine Ecology Progress Series, 351:301-310.Go to metadata icon

Holmes, E. E., J. L. Sabo, S. V. Viscido, W. Fagan. 2007. The next link will exit from NWFSC web site A Statistical Approach to quasi-extinction forecasting. Ecology Letters, 10:1182--1198.Go to metadata icon

Fagan, W., E. E. Holmes. 2006. Quantifying the extinction vortex. Ecology Letters, 9:51-60.Go to metadata icon

Gustafson, R. G., J. Drake, M. J. Ford, J. M. Myers, E. E. Holmes, R. S. Waples. 2006. Status review of Cherry Point Pacific herring (Clupea pallasii) and updated status review of the Georgia Basin Pacific herring distinct population segment under the Endangered Species Act. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-76.Go to metadata icon

Holmes, E. E., W. Fagan, J. J. Rango, A. Folarin, J. A. Sorensen, J. E. Lippe, N. E. McIntyre. 2005. Cross validation of quasi-extinction risks from real time series: An examination of diffusion approximation methods. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-NWFSC-67, 37 p.Go to metadata icon

Holmes, E. E. 2004. Beyond theory to application and evaluation: diffusion approximations for population viability analysis. Ecological Applications, 14:1272-1293. (Pre-Press Word | PDF | The next link will exit from NWFSC web site)Go to metadata icon

Holmes, E. E., B. Semmens. 2004. Population viability analysis for metapopulations: a diffusion approximation approach. Pages 565-598 in Hanski, I., O. E. Gaggiotti. (Eds.) Ecology, Genetics, and Evolution of Metapopulations. Elsevier Press.Go to metadata icon

Sabo, J. L., E. E. Holmes, P. Kareiva. 2004. The efficacy of simple viability models in ecological risk assessment: Does density dependence matter? Ecology, 85:328-341.Go to metadata icon

Holmes, E. E., A. E. York. 2003. Using age structure to detect impacts on threatened populations: A case study with steller sea lions Using age structure to detect impacts on threatened populations: A case study with steller sea lions. Conservation Biology, 17:1794-1806.Go to metadata icon

McClure, M. M., E. E. Holmes, B. L. Sanderson, C. E. Jordan. 2003. A large-scale, multispecies status assessment: anadromous salmonids in the Columbia River Basin. Ecological Applications, 13(4):964-989.Go to metadata icon

Holmes, E. E. 2002. Compute and Conserve, Book review of Quantitative methods for Conservation Biology. Conservation Biology, 16(1):275-276.Go to metadata icon

Holmes, E. E., W. Fagan. 2002. Validating population viability analysis for corrupted data sets. Ecology, 83:2379-2386. (PDF | Pre-Press Word)Go to metadata icon

Holmes, E. E. 2001. Estimating risks in declining populations with poor data. Proceedings of the National Academy of Sciences, USA, 98:5072-5077.Go to metadata icon

Holmes, E. E., P. Kareiva. 2000. Using single species measurements to anticipate community consequences of environmental contaminants. Page 344 in Albers, P., G. Heinz, H. Ohlendorf. (Eds.) Environmental Contaminants and Terrestrial Vertebrates: Effects on Populations, Communities, and Ecosystems. Special Publication of SETAC Press.Go to metadata icon