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Anderson, J. J., E. Gurarie, R. W. Zabel. 2005. Mean free-path length theory of predator-prey interactions: application to juvenile salmon migration. Ecological Modelling, 186(2):196-211.
Antolos, M., D. D. Roby, D. E. Lyons, K. Collis, A. F. Evans, M. Hawbecker, B. A. Ryan. 2005. Caspian tern predation on juvenile salmonids in the Mid-Columbia River. Transactions of the American Fisheries Society, 134:466-480.
Axel, G. A., E. F. Prentice, B. P. Sandford. 2005. PIT-tag detection system for large-diameter juvenile fish bypass pipes at Columbia River Basin hydroelectric dams. North American Journal of Fisheries Management, 25(2):646-651.
Baird, R. W., M. B. Hanson, L. M. Dill. 2005. Factors influencing the diving behaviour of fish-eating killer whales: sex differences and diel and interannual variation in diving rates. Canadian Journal of Zoology, 83:257-267.
Beckman, B. R., D. A. Larsen. 2005. Upstream migration of minijack (age-2) Chinook salmon in the Columbia River: behavior, abundance, distribution, and origin. Transactions of the American Fisheries Society, 134(6):1520-1541.
Beechie, T. J., M. Liermann, E. M. Beamer, R. Henderson. 2005. A classification of habitat types in a large river and their use by juvenile salmonids. Transactions of the American Fisheries Society, 134(3):717-729.
Berejikian, B. A., D. M. Van Doornik, A. LaRae, E. P. Tezak, J. Lee. 2005. The effects of exercise on behavior and reproductive success of captively reared steelhead. Transactions of the American Fisheries Society, 134(5):1236-1252.
Berejikian, B. A., E. P. Tezak. 2005. Male size effects on fertilization success: lack of evidence in chinook salmon spawning under experimental conditions. Environmental Biology of Fishes, 72:235-240.
Bernhardt, E. S., M. A. Palmer, J. D. Allan, G. Alexander, K. Barnas, S. Brooks, J. Carr, S. Clayton, C. Dahm, J. Follstad-Shah, D. Galat, S. Gloss, P. Goodwin, D. Hart, B. Hassett, R. Jenkinson, S. L. Katz, G. M. Kondolf, P. S. Lake, R. Lave, J. L. Meyer, T. K. O'Donnell, L. Pagano, B. Powell, E. Sudduth. 2005. Synthesizing U.S. river restoration efforts. Science, 308(5722):636-637.
Bilby, R. E., W. Ehinger, T. P. Quinn, G. Volkhardt, K. Krueger, D. E. Seiler, G. R. Pess, C. E. Jordan, D. Poon. 2005. Study evaluates fish response to management actions. Western Forester, 50(2):14-15.
Bottom, D. L., K. K. Jones, T. J. Cornwell, A. Gray, C. A. Simenstad. 2005. Patterns of Chinook salmon migration and residency in the Salmon River estuary (Oregon). Estuarine, Coastal and Shelf Science, 64(1):79-93.
Bricelj, V. M., L. Connell, K. Konoki, S. P. MacQuarrie, T. Scheuer, W. A. Catterall, V. L. Trainer. 2005. Sodium channel mutation leading to saxitoxin resistance in clams increases risk of PSP. Nature, 434:763-767.
Brodeur, R. D., J. P. Fisher, R. L. Emmett, C. A. Morgan, E. Casillas. 2005. Species composition and community structure of pelagic nekton off Oregon and Washington under variable oceanographic conditions. Marine Ecology Progress Series, 298:41-57.
Brodeur, R. D., M. P. Seki, E. A. Pakhomov, A. V. Suntsov. 2005. Micronekton - What are they and why are they importan? PICES Press, 13:7-11.
Busby, M. S., K. Mier, R. D. Brodeur. 2005. Habitat associations of demersal fishes and crabs in the Pribilof Islands region of the Bering Sea. Fisheries Research, 75(1-3):15-28.
Cook, M. A., K. Guthrie, M. B. Rust, P. D. Plesha. 2005. Effects of salinity and temperature during incubation on hatching and development of lingcod Ophiodon elongatus Girard, embryos. Aquaculture Research, 36(13):1298-1303.
De Robertis, A., C. A. Morgan, R. Schabetsberger, R. W. Zabel, R. D. Brodeur, R. L. Emmett, C. M. Knight, G. K. Krutzikowsky, E. Casillas. 2005. Columbia River plume fronts. II. Distribution, abundance and feeding ecology of juvenile salmon. Marine Ecology Progress Series, 299:33-44.
Debier C, Ylitalo GM, Weise M, Gulland F, Costa DP, Le Boeuf BJ, de Tillesse T, Larondelle Y. 2005. PCBs and DDTs in the serum of juvenile California sea lions: Associations with vitamins A and E and thyroid hormones. Environmental Pollution. 134:323-332
Devlin, R. H., L. K. Park, D. M. Sakhrani, J. Baker, A. R. Marshall, E. LaHood, S. E. Kolesar, M. R. Mayo, C. Biagi, M. Uh. 2005. Variation of Y-chromosome DNA markers in Chinook salmon (Oncorhynchus tshawytscha) populations. Canadian Journal of Fisheries and Aquatic Sciences, 62:1386-1399.
Eklund, M. W., F. T. Poysky, G. A. Pelroy, M. E. Peterson. 2005. Distribution of Dungeness crab meat to retail stores and restaurants in hermetically sealed five pound cans and the risks of Clostridium botulinum toxin production. Journal of Aquatic Food Product Technology, 14(3):3-22.
Emmett, R. L., R. D. Brodeur, T. W. Miller, S. S. Pool, P. J. Bentley, G. K. Krutzikowsky, J. McCrae. 2005. Pacific sardine (Sardinops sagax) abundance, distribution and ecological relationships in the Pacific Northwest. California Cooperative Oceanic Fisheries Investigations Reports, 46:122-143.
Fairgrieve, W. T., C. L. Masada, W. C. McAuley, M. E. Peterson, M. S. Myers, M. S. Strom. 2005. Accumulation and clearance of orally administered erythromycin and its derivative, azithromycin, in juvenile fall Chinook salmon (Oncorhynchus tshawytscha). Diseases of Aquatic Organisms, 64:99-106.
Frick, K. E. 2005. Nematocyst complements of nudibranchs in the genus Flabellina in the Gulf of Maine and the effect of diet manipulations on the cnidom of Flabellina verrucosa. Marine Biology, 147(6):1313-1321.
Fukada, H., Y. Ozaki, A. L. Pierce, S. Adachi, K. Yamauchi, A. Hara, P. Swanson, W. W. Dickhoff. 2005. Identification of the salmon somatolactin receptor, a new member of the cytokine receptor family. Endocrinology, 146:2354-2361.
Gomez-Gutierrez, J., W. T. Peterson, C. B. Miller. 2005. Cross-shelf life-stage segregation and community structure of the euphausiids off central Oregon (1970-1972). Deep Sea Research Part II: Topical Studies in Oceanography, 52:289-315.
Greene, C. M., D. Jensen, G. R. Pess, E. M. Beamer, E. A. Steel. 2005. Effects of environmental conditions during stream, estuary, and ocean residency on Chinook salmon return rates in the Skagit River, Washington. Transactions of the American Fisheries Society, 134(6):1562-1581.
Hamel, O. S. 2005. Immunosuppression in progeny of chinook salmon infected with Renibacterium salmoninarum: re-analysis of a brood stock segregation experiment. Diseases of Aquatic Organisms, 65(1):29-41.
Herman, D. P., D. G. Burrows, P. R. Wade, J. W. Durban, C. D. Matkin, R. E. LeDuc, L. G. Barrett-Lennard, M. M. Krahn. 2005. Feeding ecology of eastern North Pacific killer whales Orcinus orca from fatty acid, stable isotope, and organochlorine analyses of blubber biopsies. Marine Ecology Progress Series, 302:275-291.
Incardona, J., M. G. Carls, H. Teraoka, C. A. Sloan, T. K. Collier, N. L. Scholz. 2005. Aryl hydrocarbon receptor-independant toxicity of weathered crude oil during fish development. Environmental Health Perspectives, 113:1755-1762.
Jackson, L. F., S. D. McCormick, S. S. Madsen, P. Swanson, C. V. Sullivan. 2005. Osmoregulatory effects of hypophysectomy and homologous. Comparative Biochemistry and Physiology Part B: Comparative Biochemistry, 140:211-218.
Johnson, E. L., T. S. Clabough, D. H. Bennett, T. C. Bjornn, C. Peery, C. C. Caudill, L. C. Stuehrenberg. 2005. Migration depths of adult spring and summer Chinook salmon in the lower Columbia and Snake Rivers in relation to dissolved gas supersaturation. Transactions of the American Fisheries Society, 134:1213-1227.
Jorgensen, J. C., J. F. Kitchell. 2005. Growth potential and host mortality of the parasitic phase of the sea lamprey (Petromyzon marinus) in Lake Superior. Canadian Journal of Fisheries and Aquatic Sciences, 62:2343-2353.
Karlsson, O. M., J. S. Richardson, P. M. Kiffney. 2005. Modelling organic matter dynamics in headwater streams of southwestern British Columbia, Canada. Ecological Modelling, 183(4):463-476.
Keefer, M. L., C. Peery, W. R. Daigle, M. A. Jepson, S. R. Lee, C. T. Boggs, K. R. Tolotti, B. J. Burke. 2005. Escapement, harvest, and unknown loss of radio-tagged adult salmonids in the Columbia River-Snake River hydrosystem. Canadian Journal of Fisheries and Aquatic Sciences, 62(4):930-949.
Keister, J. E., J. B. Johnson, C. A. Morgan, W. T. Peterson. 2005. Biological indicators of the timing and direction of warm-water advection during the 1997/1998 El Niqo off the central Oregon coast, USA. Marine Ecology Progress Series, 295:43-48.
Kemp, P. S., M. H. Gessel, J. G. Williams. 2005. Fine-scale behavioral responses of Pacific salmonid smolts as they encounter divergence and acceleration of flow. Transactions of the American Fisheries Society, 134(2):390-398.
Kemp, P. S., M. H. Gessel, J. G. Williams. 2005. Seaward migrating subyearling chinook salmon avoid overhead cover. Journal of Fish Biology, 67(5):1381-1391.
Krutzikowsky, G. K., R. L. Emmett. 2005. Diel differences in surface trawl fish catches off Oregon and Washington. Fisheries Research, 71(3):365-371.
Kuligowski, D. R., M. J. Ford, B. A. Berejikian. 2005. Breeding structure of steelhead inferred from patterns of genetic relatedness among nests. Transactions of the American Fisheries Society, 134:1202-1212.
Lamb, J., W. T. Peterson. 2005. Ecological zonation of zooplankton in the COAST study region off central Oregon in June and August 2001 with consideration of retention mechanisms. Journal of Geophysical Research: Oceans, 110(C10):C10S15.
Lefebvre, K. A., N. Elder, P. K. Hershberger, V. L. Trainer, C. M. Stehr, N. L. Scholz. 2005. Dissolved saxitoxin causes transient inhibition of sensorimotor function in larval Pacific herring (Clupea harengus pallasi). Marine Biology, 147(6):1393-1402.
Lema, S. C., N. Hodges, A. Marchetti, G. A. Nevitt. 2005. Proliferation zones in the salmon telencephalon and evidence for environmental influence on proliferation rate. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology, 141:327-335.
Manel, S., O. E. Gaggiotti, R. S. Waples. 2005. Assignment methods: matching biological questions with appropriate techniques. Trends in Ecology and Evolution, 20(3):136-142.
McClelland, E. K., J. M. Myers, J. J. Hard, L. K. Park, K. A. Naish. 2005. Two generations of outbreeding in coho salmon (Oncorhynchus kisutch): effects on size and growth. Canadian Journal of Fisheries and Aquatic Sciences, 62:2538-2547.
Meador, J. P., D. W. Ernest, A. N. Kagley. 2005. A comparison of the non-essential elements cadmium, mercury, and lead found in fish and sediment from Alaska and California. Science of the Total Environment, 339(1-3):189-205.
Mobrand, L. E., J. Barr, H. L. Blankenship, D. E. Campton, T. T. Evelyn, T. A. Flagg, C. V. Mahnken, L. W. Seeb, P. R. Seidel, W. W. Smoker. 2005. Hatchery reform in Washington State: principles and emerging issues. Fisheries, 30(6):11-23.
Morgan, C. A., A. De Robertis, R. W. Zabel. 2005. Columbia River plume fronts. I. Hydrography, zooplankton distribution, and community composition. Marine Ecology Progress Series, 299:19-31.
Morley, S. A., P. S. Garcia, T. R. Bennett, P. Roni. 2005. Juvenile salmonid (Oncorhynchus spp.) use of constructed and natural side channels in Pacific Northwest rivers. Canadian Journal of Fisheries and Aquatic Sciences, 62(12):2811-2821.
Naughton, G. P., C. C. Caudill, M. L. Keefer, T. C. Bjornn, L. C. Stuehrenberg, C. Peery. 2005. Late-season mortality during migration of radio-tagged adult sockeye salmon (Oncorhynchus nerka) in the Columbia River. Canadian Journal of Fisheries and Aquatic Sciences, 62:30-47.
Oosterhout, G. R., C. W. Huntington, T. E. Nickelson, P. W. Lawson. 2005. Potential benefits of a conservation hatchery program for supplementing Oregon coast coho salmon (Oncorhynchus kisutch) populations: a stochastic model investigation. Canadian Journal of Fisheries and Aquatic Sciences, 62:1920-1935.
Phillips, R. B., M. R. Morasch, L. K. Park, K. A. Naish, R. H. Devlin. 2005. Identification of the sex chromosome pair in coho salmon (Oncorhynchus kisutch): lack of conservation of the sex linkage group with chinook salmon (Oncorhynchus tshawytscha). Cytogenetic and genome research, 111:166-170.
Pierce, A. L., H. Fukada, W. W. Dickhoff. 2005. Metabolic hormones modulate the effect of growth hormone (GH) on insulin-like growth factor-I (IGF-I) mRNA level in primary culture of salmon hepatocytes. Journal of Endocrinology, 184:341-349.
Pierce, A. L., M. Shimizu, B. R. Beckman, D. M. Baker, W. W. Dickhoff. 2005. Time course of the GH/IGF axis response to fasting and increased ration in chinook salmon (Oncorhynchus tshawytscha). General and Comparative Endocrinology, 140:192-202.
Piner, K., M. A. Haltuch, J. R. Wallace. 2005. Preliminary use of oxygen stable isotopes and the 1983 El Nino to assess the accuracy of aging black rockfish (Sebastes melanops). Fishery Bulletin, 103:553-558.
Piner, K., O. S. Hamel, J. L. Menkel, J. R. Wallace, C. E. Hutchinson. 2005. Age validation of canary rockfish (Sebastes pinniger) from off the Oregon coast (USA) using the bomb radiocarbon method. Canadian Journal of Fisheries and Aquatic Sciences, 62(5):1060-1066.
Reese, D. C., T. W. Miller, R. D. Brodeur. 2005. Community structure of near-surface zooplankton in the northern California Current in relation to oceanographic conditions. Deep Sea Research Part II: Topical Studies in Oceanography, 52:29-50.
Reinecke, M., B. T. Bjornsson, W. W. Dickhoff, S. D. McCormick, I. Navarro, D. M. Power, J. Gutierrez. 2005. Growth hormone and insulin-like growth factors in fish: where we are and where to go. General and Comparative Endocrinology, 142:20-24.
Ressler, P. H., R. D. Brodeur, W. T. Peterson, S. K. Pierce, P. M. Vance, A. R. Rostad, J. A. Barth. 2005. The spatial distribution of euphausiid aggregations in the northern California Current during August 2000. Deep Sea Research Part II: Topical Studies in Oceanography, 52(1-2):89-108.
Riley, S., C. P. Tatara, J. A. Scheurer. 2005. Aggression and feeding of hatchery-reared and naturally reared steelhead (Oncorhynchus mykiss) fry in a laboratory flume and a comparison with observations in natural streams. Canadian Journal of Fisheries and Aquatic Sciences, 62:1400-1409.
Romare, P., D. E. Schindler, M. D. Scheuerell, J. M. Scheuerell, A. H. Litt, J. H. Shepherd. 2005. Variation in spatial and temporal gradients in zooplankton spring development: the effect of climatic factors. Freshwater Biology, 50(6):1007-1021.
Sandahl, J. F., D. H. Baldwin, J. J. Jenkins, N. L. Scholz. 2005. Comparative thresholds for acetylcholinesterase inhibition and behavioral impairment in coho salmon exposed to chlorpyrifos. Environmental Toxicology and Chemistry, 24:136-145.
Scheuerell, J. M., D. E. Schindler, M. D. Scheuerell, K. L. Fresh, A. H. Litt, J. A. Shepherd, C. H. Sibley. 2005. Temporal dynamics in foraging behavior of a pelagic predator. Canadian Journal of Fisheries and Aquatic Sciences, 62(11):2494-2501.
Scheuerell, M. D. 2005. Mapping the status of Pacific salmon. Trends in Ecology and Evolution, 20(6):290-291.
Scheuerell, M. D. 2005. The influence of juvenile size on the age at maturity of individually marked wild Chinook salmon. Transactions of the American Fisheries Society, 134(4):999-1004.
Scheuerell, M. D., J. G. Williams. 2005. Forecasting climate-induced changes in the survival of Snake River spring/summer Chinook salmon. Fisheries Oceanography, 14(6):448-457.
Scheuerell, M. D., P. S. Levin, R. W. Zabel, J. G. Williams, B. L. Sanderson. 2005. A new perspective on the importance of marine-derived nutrients to threatened stocks of Pacific salmon (Oncorhynchus spp.). Canadian Journal of Fisheries and Aquatic Sciences, 62(5):961-964.
Schindler, D. E., D. E. Rogers, M. D. Scheuerell, C. A. Abrey. 2005. Effects of changing climate on zooplankton and juvenile sockeye salmon growth in southwestern Alaska. Ecology, 86(1):198-209.
Sorensen, M., T. Storebakken, K. D. Shearer. 2005. Digestibility, growth and nutrient retention in rainbow trout (Oncorhynchus mykiss) fed diets extruded at two different temperatures. Aquaculture Nutrition, 11:251-256.
Spromberg JA, Meador JP. 2005. Relating results of chronic toxicity responses to population-level effects: modeling effects on wild Chinook salmon populations. Integrated Environmental Assessment and Management 1(1):9-21.
Suchman, C. L., R. D. Brodeur. 2005. Abundance and distribution of large medusae in surface waters of the northern California Current. Deep Sea Research Part II: Topical Studies in Oceanography, 52:51-72.
Sutor, M. M., T. J. Cowles, W. T. Peterson, J. Lamb. 2005. Comparison of acoustic and net sampling systems to determine patterns in zooplankton distribution. Journal of Geophysical Research: Oceans, 110(C10):C10S16.
Sutor, M. M., T. J. Cowles, W. T. Peterson, S. D. Pierce. 2005. Acoustic observations of finescale zooplankton distributions in the Oregon upwelling region. Deep Sea Research Part II: Topical Studies in Oceanography, 52:109-121.
Swartzman, G. L., A. G. Winter, K. O. Coyle, R. D. Brodeur, T. Buckley, L. Ciannelli, G. L. Hunt Jr., J. N. Ianelli, A. Macklin. 2005. Relationship of age-0 pollock abundance and distribution around the Pribilof Islands, to other shelf regions of the eastern Bering Sea. Fisheries Research, 74:273-287.
Tear, T. H., P. Kareiva, P. L. Angermeier, P. Comer, B. Czech, R. Kautz, L. Landon, D. Mehlman, K. Murphy, M. H. Ruckelshaus, J. M. Scott, G. Wilhere. 2005. How much is enough? The recurrent problem of setting measurable objectives in conservation. Bioscience, 55:835-849.
Waples, R. S. 2005. Genetic estimates of contemporary effective population size: to what time periods do the estimates apply? Molecular Ecology, 14(11):3335-3352.
Weitkamp, L. A. 2005. Quillfish Ptilichthys goodei, filiform prey for small coho and chinook salmon. Alaska Fishery Research Bulletin, 11(1):61-65.
Ylitalo, G. M., J. E. Stein, T. Hom, L. L. Johnson, K. L. Tilbury, A. J. Hall, T. Rowles, D. Greig, L. J. Lowenstine, F. Gulland. 2005. The role of organochlorines in cancer-associated mortality in California sea lions (Zalophus californianus). Marine Pollution Bulletin, 50:30-39.
Zabel, R. W., T. Wagner, J. L. Congleton, S. G. Smith, J. G. Williams. 2005. Survival and selection of migrating salmon from capture-recapture models with individual traits. Ecological Applications, 15(4):1427-1439.
Zamon, J. E., D. W. Welch. 2005. Rapid shift in zooplankton community composition on the northeast Pacific shelf during the 1998-1999 El Niño-La Niña event. Canadian Journal of Fisheries and Aquatic Sciences, 62(1):133-144.