Northwest Fisheries Science Center

Publications: Journal Article

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2008

Acker, S. A., T. J. Beechie, P. B. Shafroth. 2008. The next link will exit from NWFSC web site Effects of a natural dam-break flood on geomorphology and vegetation on the Elwha River, Washington, U.S.A. Northwest Science, 82(sp1):210-223.Go to metadata icon

Amend, M.R., Yoklavich, M.M., Rzhanov, Y., Grimes, C.B., and Wakefield, W.W., 2007, Mosaics of benthic habitats using laser line scan technology: its in the details, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 61-69.Go to metadata icon

Anderson, D. M., J. M. Burkholder, W. P. Cochlan, P. M. Glibert, C. J. Gobler, C. Heil, R. Kudela, M. L. Parsons, J. J. Rensel, D. W. Townsend, V. L. Trainer, G. A. Vargo. 2008. Harmful algal blooms and eutrophication: Examples of linkages from selected coastal regions of the United States. Harmful Algae, 8(1):39-53.Go to metadata icon

Anderson, E., R. S. Waples, S. T. Kalinowski. 2008. The next link will exit from NWFSC web site An improved method for predicting the accuracy of genetic stock identification. Canadian Journal of Fisheries and Aquatic Sciences, 65(7):1475-1486.Go to metadata icon

Anderson, J. H., P. M. Kiffney, G. R. Pess, T. P. Quinn. 2008. The next link will exit from NWFSC web site Summer distribution and growth of juvenile coho salmon during colonization of newly accessible habitat. Transactions of the American Fisheries Society, 137(3):772-781.Go to metadata icon

Angilletta Jr., M. J., E. A. Steel, K. K. Bartz, J. G. Kingsolver, M. D. Scheuerell, B. R. Beckman, L. G. Crozier. 2008. The next link will exit from NWFSC web site Big dams and salmon evolution: changes in thermal regimes and their potential evolutionary consequences. Evolutionary Applications, 1(2):286-299.Go to metadata icon

Araguas, R. M., N. Sanz, R. Fernandez, F. M. Utter, C. Pla, J. L. Garcia-Marin. 2008. The next link will exit from NWFSC web site Genetic refuges for a self-sustained fishery: experience in wild brown trout populations in the eastern Pyrenees. Ecology of Freshwater Fish, 17(4):610-616.Go to metadata icon

Araki, H., B. A. Berejikian, M. J. Ford, M. Blouin. 2008. Fitness of hatchery-reared salmonids in the wild. Evolutionary Applications, 1:342-355.Go to metadata icon

Baker, R., P. S. Levin, T. J. Minello. 2008. The link between coastal wetlands and white shrimp fishery production in the northern Gulf of Mexico., ICES CM 2008/M:11.Go to metadata icon

Beckman, B. R., B. A. Gadberry, P. Parkins, D. A. Larsen. 2008. The next link will exit from NWFSC web site The effect of Yakima River spring Chinook salmon sire life history type on emergence timing and size of progeny. Transactions of the American Fisheries Society, 137(5):1285-1291.Go to metadata icon

Beechie, T. J., G. R. Pess, P. Roni, G. Giannico. 2008. The next link will exit from NWFSC web site Setting river restoration priorities: a review of approaches and a general protocol for identifying and prioritizing actions. North American Journal of Fisheries Management, 28(3):891-905.Go to metadata icon

Beechie, T. J., M. M. Pollock, S. Baker. 2008. The next link will exit from NWFSC web site Channel incision, evolution, and potential recovery in the Walla Walla and Tucannon River basins, northwestern USA. Earth Surface Processes and Landforms, 33(5):784-800.Go to metadata icon

Berejikian, B. A., T. Johnson, R. Endicott, J. Lee. 2008. Increases in Steelhead Redd Abundance Resulting from Two Conservation Hatchery Strategies in the Hamma Hamma River, WA. Canadian Journal of Fisheries and Aquatic Sciences, 65:754-764.Go to metadata icon

Bersine, K., V. E. Brenneis, R. C. Draheim, A. M. Wargo Rub, J. E. Zamon, R. K. Litton, S. A. Hinton, M. D. Sytsma, J. R. Cordell, J. W. Chapman. 2008. The next link will exit from NWFSC web site Distribution of the invasive New Zealand mudsnail (Potamopyrgus antipodarum) in the Columbia River Estuary and its first recorded occurrence in the diet of juvenile Chinook salmon (Oncorhynchus tshawytscha). Biological Invasions, 10(8):1381-1388.Go to metadata icon

Brenkman, S. J., G. R. Pess, C. E. Torgersen, K. Kloehn, J. J. Duda, S. C. Corbett. 2008. The next link will exit from NWFSC web site Predicting recolonization patterns and interactions between potamodromous and anadromous salmonids in response to dam removal in the Elwha River, Washington State, USA. Northwest Science, 82(sp1):91-106.Go to metadata icon

Brodeur, R. D., C. L. Suchman, D. C. Reese, T. W. Miller, E. A. Daly. 2008. The next link will exit from NWFSC web site Spatial overlap and trophic interaction between pelagic fish and large jellyfish in the northern California Current. Marine Biology, 154(4):649-659.Go to metadata icon

Brodeur, R. D., W. T. Peterson, T. D. Auth, H. L. Soulen, M. M. Parnel, A. A. Emerson. 2008. The next link will exit from NWFSC web site Abundance and diversity of coastal fish larvae as indicators of recent changes in ocean and climate conditions in the Oregon upwelling zone. Marine Ecology Progress Series, 366:187-202.Go to metadata icon

Burke, B. J., K. E. Frick, R. E. Moses, M. McHenry. 2008. The next link will exit from NWFSC web site Movements by adult coho salmon in the lower Elwha River, Washington. Northwest Science, 82(sp1):119-127.Go to metadata icon

Carls, M. G., L. Holland, M. Larsen, T. K. Collier, N. L. Scholz, J. Incardona. 2008. Fish embryos are damaged by dissolved PAHs, not oil particles. Aquatic Toxicology, 88:121-127.Go to metadata icon

Carvan III, M. J., J. Incardona, M. L. Rise. 2008. Meeting the Challenges of Aquatic Vertebrate Ecotoxicology. Bioscience, 58(11):1015-1025.Go to metadata icon

Chan, F., J. A. Barth, J. Lubchenco, A. Kirincich, H. Weeks, W. T. Peterson, B. A. Menge. 2008. The next link will exit from NWFSC web site Emergence of anoxia in the California Current large marine ecosystem. Science, 319(58-65):920.Go to metadata icon

Colt, J., Summerfelt, S., Pfeiffer, T., Fivelstad , S., Rust, M. 2008. Energy and resource consumption of land-based Atlantic Salmon smolt hatcheries in the Pacific Northwest (USA). Aquaculture 280, 94-108.Go to metadata icon

Cook, M. A., R. Johnson, P. Nicklason, H. Barnett, M. B. Rust. 2008. Marking Live Feeds with Inert Metal Oxides For Fish Larvae Feeding and Nutrition Studies. Aquaculture Research, 39(4):347-353.Go to metadata icon

Copps, S.L., Yoklavich, M.M., Parkes, G.B., Wakefield, W.W., Bailey, A., Greene, H.G., Goldfinger, C., and Burn, R.W., 2007, Applying marine habitat data to fishery management on the U.S. west coast: Initiating a policy-science feedback loop, in Todd, B.J., and Greene, H.G., eds., Mapping the Seafloor for Habitat Characterization: Geological Association of Canada, Special Paper 47, p. 451-462.Go to metadata icon

Courbois, J., S. L. Katz, D. J. Isaak, E. A. Steel, R. F. Thurow, M. Rub, T. Olsen, C. E. Jordan. 2008. Evaluating probability sampling strategies for estimating redd counts: an example with Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Crozier, L. G., A. P. Hendry, P. W. Lawson, T. P. Quinn, N. Mantua, J. Battin, R. G. Shaw, R. B. Huey. 2008. The next link will exit from NWFSC web site Evolutionary responses to climate change for organisms with complex life histories: evolution and plasticity in Pacific salmon. Evolutionary Applications, 1(2):252-270.Go to metadata icon

Crozier, L. G., R. W. Zabel, A. F. Hamlet. 2008. The next link will exit from NWFSC web site Predicting differential effects of climate change at the population level with life-cycle models of spring Chinook salmon. Global Change Biology, 14(2):236-249.Go to metadata icon

Ellner, S. P. and E. E. Holmes. 2008. Resolving the debate on when extinction risk is predictable. Ecology Letters 11: E1E5.Go to metadata icon

Emmett, R. L., G. K. Krutzikowsky. 2008. The next link will exit from NWFSC web site Nocturnal feeding of Pacific hake and jack mackerel off the mouth of the Columbia River, 1998-2004: implications for juvenile salmon predation. Transactions of the American Fisheries Society, 137(3):657-676.Go to metadata icon

Erdner, D. L., J. Dyble, M. L. Parsons, R. C. Stevens, K. A. Hubbard, M. L. Wrabel, S. K. Moore, K. A. Lefebvre, D. M. Anderson, P. Bienfang, R. R. Bidigare, M. S. Parker, P. Moeller, L. E. Brand, V. L. Trainer. 2008. The next link will exit from NWFSC web site Centers for Oceans and Human Health: a unified approach to the challenge of harmful algal blooms. Environmental Health, 7(Suppl 2):S2.Go to metadata icon

Ferguson, J. W., G. Ploskey, K. Leonardsson, R. W. Zabel, H. Lundqvist. 2008. The next link will exit from NWFSC web site Combining turbine blade-strike and life-cycle models to assess mitigation strategies for fish passing dams. Canadian Journal of Fisheries and Aquatic Sciences, 65(8):1568-1585.Go to metadata icon

Ford MJ, Hard JJ, Boelts B, LaHood E, Miller J. 2008. Estimates of natural selection in a salmon population in captive and natural environments. Conservation Biology 22:783-794Go to metadata icon

Good, T. P., J. R. Davies, B. J. Burke, M. H. Ruckelshaus. 2008. The next link will exit from NWFSC web site Incorporating catastrophic risk assessments into setting conservation goals for Pacific salmon. Ecological Applications, 18(1):246-257.Go to metadata icon

Grober-Dunsmore, R., L. Wooninck, C. Wahle, C. H. Ainsworth, S. Berkeley, J. P. Beets, J. Bohnsack, R. Boulon, R. D. Brodeur, J. K. Brodziak, J. Field, D. Gleason, M. A. Hixon, W. L. Lindberg, M. Miller, L. Morgan. 2008. Vertical Zoning in Marine Protected Areas: Ecological Considerations For Balancing Pelagic Fishing With Conservation of Benthic Communities. Fisheries, 33(12):598-610.Go to metadata icon

Hall, A. J., F. M. Gulland, G. M. Ylitalo, D. J. Greig, L. J. Lowenstine. 2008. Changes in blubber contaminant concentrations in California sea lions (Zalophus californianus) associated with weight loss and gain during rehabilitation. Environmental Science & Technology, 42:4181-4187.Go to metadata icon

Haltuch, M. A., A. E. Punt, M. W. Dorn. 2008. Evaluating Alternative Estimators of Fishery Management Reference Points. Fisheries Research.Go to metadata icon

Hamel, O. S., K. R. Piner, J. R. Wallace. 2008. A robust deterministic model describing the bomb radiocarbon signal for use in fish age validation. Transactions of the American Fisheries Society, 137(3):852-859.Go to metadata icon

The next link will exit from NWFSC web site Hard, J. J., M. R. Gross, M. Heino, R. Hilborn, R. G. Kope, R. Law, and J. D. Reynolds. 2008. Evolutionary consequences of fishing and their implications for salmon. Evolutionary Applications 1(2):388-408.Go to metadata icon

Harvey, C. J., K. Gross, V. H. Simon, J. Hastie. 2008. Trophic and fishery interactions between Pacific hake and rockfish: effect on rockfish population rebuilding times. Marine Ecology Progress Series, 365:165-176.Go to metadata icon

Harvey, C. J., M. Ebener, C. K. White. 2008. Spatial and ontogenetic variability of sea lamprey diets in Lake Superior. Journal of Great Lakes Research, 34(3):434-449.Go to metadata icon

Hauser, L., R. S. Waples, G. Carvalho. 2008. The next link will exit from NWFSC web site Editorial (introduction to special issue: advances in marine fish and fisheries genetics ). Fish and Fisheries, 9(4):331-332.Go to metadata icon

Herman, D. P., C. O. Matkin, G. M. Ylitalo, J. W. Durban, M. B. Hanson, M. E. Dahlheim, J. M. Straley, P. R. Wade, K. L. Tilbury, R. H. Boyer, R. W. Pearce, M. M. Krahn. 2008. Assessing the age-distributions of killer whale (Orcinus orca) populations from the composition of endogenous fatty acids in their outer-blubber layers. Marine Ecology Progress Series, 372:289-302.Go to metadata icon

Hess, J. E., B. J. Swalla, P. Moran. 2008. The next link will exit from NWFSC web site New Molecular markers to genetically differentiate populations of Didemnum vexilluman (Kott, 2002) - an invasive ascidian species. Aquatic Invasions, 4(2):299-310.Go to metadata icon

The next link will exit from NWFSC web site Holt, M.M., Noren, D., Veirs, V., Emmons, C., and Veirs, S. 2009. (Published online 22 Dec 2008). Speaking up: Killer whales (Orcinus orca) increase their call amplitude in response to vessel noise. Journal of the Acoustical Society of America (JASA) Express Letters. 125: EL27-EL32. Go to metadata icon

Hom, T., T. K. Collier, M. M. Krahn, M. S. Strom, G. M. Ylitalo, W. B. Nilsson, R. N. Paranjpye, U. Varanasi. 2008. Assessing Seafood Safety in the Aftermath of Hurricane Katrina. American Fisheries Society Symposium, 64:73-93.Go to metadata icon

Jacobson, K. C., D. J. Teel, D. M. Van Doornik, E. Casillas. 2008. The next link will exit from NWFSC web site Parasite-associated mortality of juvenile Pacific salmon caused by the trematode Nanophyetus salmincola during early marine residence. Marine Ecology Progress Series, 354:235-244.Go to metadata icon

Johnson, L. L., D. P. Lomax, M. S. Myers, O. P. Olson, S. Y. Sol, S. M. O'Neill, J. E. West, T. K. Collier. 2008. Xenoestrogen Exposure and Effects in English Sole (Parophrys vetulus) from Puget Sound, WA. Aquatic Toxicology, 88:29-38.Go to metadata icon

Juan Jordá, M.J., J.A. Barth, M.E. Clarke and W.W. Wakefield. 2009. Groundfish species associations with distinct oceanographic habitats off the Pacific Northwest Coast. Fisheries Oceanography 8:1-19.Go to metadata icon

Kemp, P. S., J. G. Williams. 2008. Response of migrating Chinook salmon (Oncorhynchus tshawytscha) smolts to instream structure associated with culverts. River Research and Applications, 24(5):571-579.Go to metadata icon

Kemp, P. S., M. H. Gessel, J. G. Williams. 2008. The next link will exit from NWFSC web site Response of downstream migrant juvenile Pacific salmonids to accelerating flow and overhead cover. Hydrobiologia, 609(1):205-217.Go to metadata icon

Kiffney, P. M. 2008. The next link will exit from NWFSC web site Response of lotic producer and consumer trophic levels to gradients of resource supply and predation pressure. Oikos, 117(9):1428-1440.Go to metadata icon

Kiffney, P. M., G. R. Pess, J. H. Anderson, P. Faulds, K. Burton, S. Riley. 2008. The next link will exit from NWFSC web site Changes in fish communities following recolonization of the Cedar River, WA, USA by Pacific salmon after 103 years of local extirpation. River Research and Applications, 25(4):438-452.Go to metadata icon

Kloehn, K., T. J. Beechie, S. A. Morley, H. J. Coe, J. J. Duda. 2008. The next link will exit from NWFSC web site Influence of dams on river-floodplain dynamics in the Elwha River, Washington. Northwest Science, 82(sp1):224-235.Go to metadata icon

Krahn, M. M., R. Pitman, D. G. Burrows, D. P. Herman, R. W. Pearce. 2008. Use of chemical tracers to assess diet and persistent pollutants in Antarctic type C killer whales. Marine Mammal Science, 24(3):6663-663.Go to metadata icon

LaHood ES, Miller JJ, Apland C, Ford MJ (2008) A Rapid, Ethanol-Free Fish Tissue Collection Method for Molecular Genetic Analyses. Transactions of the American Fisheries Society: Vol. 137, No. 4 pp. 11041107 Go to metadata icon

Lee, J. S., B. A. Berejikian. 2008. Behavioural Syndrome Stability without Stability of Individual Behaviour: Consequences for Rockfish Stock Enhancement. Environmental Biology of Fishes, 82(2):179-186.Go to metadata icon

Lee, J. S., B. A. Berejikian. 2008. Effects of the Rearing Environment on Average Behavior and Behavioral Variation in Steelhead. Journal of Fish Biology, 72:1736-1749.Go to metadata icon

Lefebvre, K. A., B. D. Bill, A. Erickson, K. A. Baugh, L. O'Rourke, P. R. Costa, S. L. Nance, V. L. Trainer. 2008. The next link will exit from NWFSC web site Characterization of intracellular and extracellular saxitoxin levels in both field and cultured Alexandrium spp. samples from Sequim Bay, Washington. Marine Drugs, 6(2):103-116.Go to metadata icon

Lema, S. C., J. T. Dickey, I. R. Schultz, P. Swanson. 2008. Dietary exposure to the brominated flame retardant PBDE 47 alters plasma thyroid status and associated gene expression in the pituitary and brain of the teleost Pimephales promelas. Environmental Health Perspectives.Go to metadata icon

Lema, S. C., J. T. Dickey, P. Swanson. 2008. Molecular cloning and sequence analysis of mulitple cDNA variants for thyroid-stimulating hormone B subunit (TSHB) in the fathead minnow (Pimephales promelas). General and Comparative Endocrinology, 155(2):472-480.Go to metadata icon

Liermann, M., P. Roni. 2008. The next link will exit from NWFSC web site More sites or more years? Optimal study design for monitoring fish response to watershed restoration. North American Journal of Fisheries Management, 28(3):935-943.Go to metadata icon

The next link will exit from NWFSC web site Luckenbach JA, Iliev DB, Goetz FW, Swanson P, 2008. Identification of differentially expressed ovarian genes during primary and early secondary oocyte growth in coho salmon, Oncorhynchus kisutch. Reproductive Biology and Endocrinology 6:2.Go to metadata icon

Luckenbach, J. A., F. W. Goetz, P. Swanson. 2008. Expressed sequence tags (ESTs) of follicle/interstitial cell enriched ovarian tissue from previtellogenic coho salmon. Cybium, 32(2 supplement):142-144.Go to metadata icon

Luckenbach, J. A., M. Kusakabe, P. Swanson, G. Young. 2008. Unilateral ovariectomy increases egg size and reduces follicular atresia in the semelparous coho salmon, Oncorhynchus kisutch. Journal of Experimental Zoology, 309A:468-476.Go to metadata icon

McCarthy, S. G., J. Incardona, N. L. Scholz. 2008. Coastal storms, toxic turnoff, and the sustainable conservation of fish and fisheries. American Fisheries Society Symposium, 64:7-27.Go to metadata icon

McClure, M. M., F. M. Utter, C. Baldwin, R. W. Carmichael, P. Hassemer, P. Howell, P. Spruell, T. Cooney, H. Schaller, C. Petrosky. 2008. The next link will exit from NWFSC web site Evolutionary effects of alternative artificial propagation programs: implications for viability of endangered anadromous salmonids. Evolutionary Applications, 1(2):356-375. doi:10.1111/j.1752-4571.2008.00034.xGo to metadata icon

McClure, M. M., S. M. Carlson, T. J. Beechie, G. R. Pess, J. C. Jorgensen, S. M. Sogard, S. E. Sultan, D. M. Holzer, J. Travis, B. L. Sanderson, M. E. Power, R. W. Carmichael. 2008. The next link will exit from NWFSC web site Evolutionary consequences of habitat loss for Pacific anadromous salmonids. Evolutionary Applications, 1(2):300-318.Go to metadata icon

McHenry, M. L., G. R. Pess. 2008. The next link will exit from NWFSC web site An overview of monitoring options for assessing the response of salmonids and their aquatic ecosystems in the Elwha River following dam removal. Northwest Science, 82(sp1):29-47.Go to metadata icon

McIntyre, J. K., D. H. Baldwin, J. P. Meador, N. L. Scholz. 2008. Chemosensory deprivation in juvenile coho salmon exposed to dissolved copper under varying water chemistry conditions. Environmental Science & Technology, 42(4):1352-1358.Go to metadata icon

Meador, J. P., J. Buzitis, C. F. Bravo. 2008. Using fluorescent aromatic compounds (FACs) in bile from juvenile salmonids to predict exposure to polycyclic aromatic hydrocarbons. Environmental Toxicology and Chemistry, 27(4):845-853.Go to metadata icon

Meador, J. P., L. S. McCarty, B. I. Escher, W. J. Adams. 2008. The tissue-residue approach for toxicity assessment: concepts, issues, application, and recommendations. Journal of Environmental Monitoring, 10(12):14861498.Go to metadata icon

Miller, T. W., R. D. Brodeur, G. H. Rau. 2008. Carbon Stable Isotopes reveal Relative Contribution of Shelf-Slope Production to the Northern California Current Pelagic Community. Limnology and Oceanography, 53:1493-1503.Go to metadata icon

Moore, S. K., V. L. Trainer, N. Mantua, M. S. Parker, E. A. Laws, L. A. Backer, L. E. Fleming. 2008. Centers for Oceans and Human Health: Climate variability, climate change and harmful algal blooms. Environmental Health, 7(S4 doi:10.1186/1476-069X-7-S2-S4).Go to metadata icon

Moore, S., V. L. Trainer, N. Mantua, M. S. Parker, E. A. Laws, L. C. Backer, L. E. Fleming. 2008. Impacts of climate variability and future climate change on harmful algal blooms and human health. Environmental Health Perspectives, 7(S4 doi:10.1186/1476-069X-7-S2-S4).Go to metadata icon

Morley, S. A., J. J. Duda, H. J. Coe, K. Kloehn, M. McHenry. 2008. The next link will exit from NWFSC web site Benthic invertebrates and periphyton in the Elwha River basin: current conditions and predicted response to dam removal. Northwest Science, 82(sp1):179-196.Go to metadata icon

Myers, M. J., G. M. Ylitalo, M. M. Krahn, D. Boyd, D. Calkins, V. Burkanov, S. Atkinson. 2008. Organochlorine contaminants in endangered stellar sea lion pups (eumetopias jubatus) from Western Alaska and the Russian Far East. Science of the Total Environment.Go to metadata icon

Myers, M. S., B. F. Anulacion, B. L. French, W. L. Reichert, C. A. Laetz, J. Buzitis, O. P. Olson, S. Y. Sol, T. K. Collier. 2008. Improved Flatfish Health Following Remediation of a PAH-contaminated Site in Eagle Harbor, Washington. Aquatic Toxicology, 88(4):277-288.Go to metadata icon

Naish, K. A., and J. J. Hard. 2008. Bridging the gap between the genotype and the phenotype: linking genetic variation, selection and adaptation in fishes. Fish and Fisheries 9:396-422.Go to metadata icon

Narum, S. R., T. L. Schultz, D. M. Van Doornik, D. J. Teel. 2008. The next link will exit from NWFSC web site Localized genetic structure persists in wild populations of Chinook salmon in the John Day River despite gene flow from outside sources. Transactions of the American Fisheries Society, 137(6):1650-1656.Go to metadata icon

Neely, K. G., J. M. Myers, J. J. Hard, and K. D. Shearer. 2008. Comparison of growth, feed intake, and nutrient efficiency in a selected strain of coho salmon (Oncorhynchus kisutch) and its source stock. Aquaculture 283 (2008):134-140.Go to metadata icon

Nicklason, P., R. B. Johnson. 2008. Real time measurement of protein leaching from micro-. Aquaculture Research, 39:1793-1798.Go to metadata icon

Olson, B.M., Lessard, E.J., Cochlan, W.P., and V.L. Trainer. 2008. Intrinsic growth and phytoplankton grazing on toxigenic Pseudo-nitzschia spp. diatoms from the coastal Northeast Pacific. Limnol. Oceanogr. 53(4): 1352-1368. Go to metadata icon

Paranjpye, R. N., M. E. Peterson, F. T. Poysky and M.W. Eklund. 2008. Incidence, Growth and Inactivation of Listeria monocytogenes in cooked and peeled cold-water shrimp. J. Aquat. Food Prod. Technol.17(3):266-284.Go to metadata icon

Parnel, M. M., R. L. Emmett, R. D. Brodeur. 2008. The next link will exit from NWFSC web site Ichthyoplankton community in the Columbia River plume off Oregon: effects of fluctuating oceanographic conditions. Fishery Bulletin, 106(2):161-173.Go to metadata icon

Pess, G. R., M. McHenry, T. J. Beechie, J. R. Davies. 2008. The next link will exit from NWFSC web site Biological impacts of the Elwha River dams and potential salmonid responses to dam removal. Northwest Science, 82(sp1):72-90.Go to metadata icon

Picha, M. E., M. J. Turano, B. R. Beckman, R. J. Borski. 2008. Endocrine Biomarkers of Growth and Applications to Aquaculture: A Mini-Review of Growth Hormone, Insulin-like Growth Factor-I and IGF Binding Proteins as Growth Indicators in Fish. North American Journal of Aquaculture, 70:196-211.Go to metadata icon

Pool, S. S., R. D. Brodeur, N. L. Goodman, E. A. Daly. 2008. Abundance, distribution, and feeding patterns of juvenile coho salmon (Oncorhynchus kisutch) in the Juan de Fuca Eddy in relation to physical and biological conditions. Estuarine, Coastal and Shelf Science, 80:85-94.Go to metadata icon

Poole, G. C., S. J. O'Daniel, K. L. Jones, W. W. Woessner, E. S. Bernhardt, A. M. Helton, J. A. Stanford, B. R. Boer, T. J. Beechie. 2008. The next link will exit from NWFSC web site Hydrologic spiralling: the role of multiple interactive flow paths in stream ecosystems. River Research and Applications, 24(7):1018-1031.Go to metadata icon

Punt, A. E., M. W. Dorn, M. A. Haltuch. 2008. Simulation Evaluation of Threshold Management Strategies for Groundfish off the U.S. West Coast. Fisheries Research.Go to metadata icon

Raven, P. A., M. Uh, D. M. Sakhrani, B. R. Beckman, K. A. Cooper, J. Pinter, E. Leder, J. T. Silverstein, R. H. Devlin. 2008. Endocrine effects of growth hormone overexpression in transgenic coho salmon. General and Comparative Endocrinology, 159:26-37.Go to metadata icon

Reichert, W. L., C. M. Greene, R. E. Bilby. 2008. The next link will exit from NWFSC web site Seasonal variations in stable isotope ratios of juvenile coho salmon (Oncorhynchus kisutch) from western Washington rivers. Canadian Journal of Fisheries and Aquatic Sciences, 65(4):681-690.Go to metadata icon

Reppond, K. D., L. Rugolo, A. C. Oliveira. 2008. Change in biochemical composition during development of snow crab, chionoecete sopilio, embryos. Journal of Crustacean Biology, 28(3):520-528.Go to metadata icon

Change in Biochemical Composition During Kermit Reppond, Louis Rugolo, and Alexandra C. M. de Oliveira. 2008. Development of Snow Crab, Chionoecetes opilio, Embryos. Journal of Crustacean Biology, 28(3): 519527. Go to metadata icon

Rhodes, L. D., O. T. Nguyen, R. K. Deinhard, T. M. White, L. W. Harrell, M. C. Roberts. 2008. Characterization of Renibacterium salmoninarum with reduced susceptibility to macrolide antibiotics by a standardized antibiotic susceptibility test. Diseases of Aquatic Organisms, 80(3):173-180.Go to metadata icon

Romsos, C., C. Goldfinger, R. Robison, R.L. Milstein, and W.W. Wakefield. 2007. Development of a regional seafloor surficial geologic habitat map for the continental margins of Oregon and Washington, USA. In B.J. Todd and H.G. Greene, eds., Mapping the Seafloor for Habitat Characterization. Geological Association of Canada, Special Paper 47, p. 219-243.Go to metadata icon

Roni, P. 2008. The next link will exit from NWFSC web site Monitoring salmon stream restoration: insights from resoration of rivers in the American Pacific Northwest. Atlantic Salmon Journal, Winter 2007-2008:20-22.Go to metadata icon

Roni, P., D. Van Slyke, B. A. Miller, J. L. Ebersole, G. R. Pess. 2008. The next link will exit from NWFSC web site Adult coho salmon and steelhead use of boulder weirs in southwest Oregon streams. North American Journal of Fisheries Management, 28(3):970-978.Go to metadata icon

Roni, P., K. Hanson, T. J. Beechie. 2008. The next link will exit from NWFSC web site Global review of the physical and biological effectiveness of stream habitat rehabiliataion techniques. North American Journal of Fisheries Management, 28(3):856-890.Go to metadata icon

Ruckelshaus, M. H., T. Klinger, N. Knowlton, D. Demaster, E. Sala. 2008. Marine Ecosystem-Based Management in Practice: Scientific and Governance Challenges. Bioscience, 58:53-63.Go to metadata icon

Short, J. W., K. Springman, M. R. Lindeberg, L. Holland, M. Larsen, C. A. Sloan, C. Khan, P. V. Hodson, S. D. Rice. 2008. Semipermeable membrane devices link site-specific contaminants to effects: part II - a comparison of lingering Exxon Valdez oil with other potential sources of CYP1A inducers in Prince William Sound, Alaska. Marine Environmental Research, 66:487-498.Go to metadata icon

Sol, S. Y., L. L. Johnson, D. Boyd, O. P. Olson, D. P. Lomax, T. K. Collier. 2008. Retionships between anthropogenic chemical contaminant exposure and associated changes in reproductive parameters in male English sole (Parophrys vetulus) collected from Hylebos Waterway, Puget Sound, Washington. Archives of Environmental Contamination and Toxicology, 55(4):627-638.Go to metadata icon

Stephenson, J. J., M. R. Campbell, J. E. Hess, C. C. Kozfkay, A. P. Matala, M. V. McPhee, P. Moran, S. R. Narum, M. M. Paquin, O. Schlei, M. P. Small, D. M. Van Doornik, J. K. Wenburg. 2008. The next link will exit from NWFSC web site A centralized model for creating shared, standarized, microsatellite data that simplifies inter-laboratory collaboration. Conservation Genetics, 10(4):1145-1149.Go to metadata icon

Stewart, J. R., R. J. Gast, R. S. Fujioka, H. M. Solo-Gabriele, J. S. Meschke, L. A. Amaral-Zettler, E. D. Castillo, M. F. Polz, T. K. Collier, M. S. Strom, C. Sinigalliano, P. D. Moeller, A. F. Holland. 2008. The coastal environment and human health: Microbial indicators, pathogens, sentinels and reservoirs. Environmental Health, 7(Suppl 2):S3. (The next link will exit from NWFSC web siteCitation | The next link will exit from NWFSC web siteFull text HTML | The next link will exit from NWFSC web siteFull text PDF)Go to metadata icon

Stoner, A.W., C.H. Ryer, S.J. Parker, P.J. Auster, W.W. Wakefield. 2008. Evaluating the role of fish behavior in surveys conducted with underwater vehicles. Canadian Journal of Fisheries and Aquatic Sciences 65:1230-1243.Go to metadata icon

Suntsov, A. V., R. D. Brodeur. 2008. Trophic ecology of three dominant myctophid species in the northern California Current region. Marine Ecology Progress Series, 373:81-96.Go to metadata icon

Swanson, P., B. Campbell, K. D. Shearer, J. Dickey, B. R. Beckman, D. A. Larsen, L. K. Park, B. Berijikian. 2008. Application of Reproductive Technologies to Captive Breeding Programs for Converservation of Imperiled Stocks of Pacific Salmon. Cybium, 32(2, suppl.):279-282.Go to metadata icon

Tatara, C. P., S. Riley, J. A. Scheurer. 2008. Environmental enrichment in steelhead (Oncorhynchus mykiss) hatcheries: field evaluation of aggression, foraging and territoriality in natural and hatchery fry. Canadian Journal of Fisheries and Aquatic Sciences, 65(4):744-753.Go to metadata icon

Thompson, K. R., S. D. Rawles, L. S. Metts, R. Smith, A. L. Gannam, R. Twibell, R. B. Johnson, Y. J. Brady, C. D. Webster. 2008. Digestibility of Dry Matter, Protein, Lipid, and Organic Matter of Two Fish Meals, Two Poultry By-Product Meals, Soybean Meal, and Distiller's Dried Grains with Solubles in Practical Diets for Sunshine Bass (Morone chrysops X M. saxatilis). Journal of the World Aquaculture Society, 39(3):352-63.Go to metadata icon

Thrower, F. P., and J. J. Hard. 2009. Effects of a single event of close inbreeding on growth and survival in steelhead. Conservation Genetics 10:1299-1307.Go to metadata icon

Tyson, R., C. E. Jordan, J. Hebert. 2008. The next link will exit from NWFSC web site Modelling anguilliform swimming at intermediate Reynolds number: A review and new approach using the immersed boundary method. Computer Methods in Applied Mechanics and Engineering, 197((25-28)):2105-2118.Go to metadata icon

Vaccaro, I., K. C. Norman. 2008. Social Sciences and Landscape Analysis: Opportunities for the Improvement of Conservation Policy Design. Journal of Environmental Management, 88(2):360-371.Go to metadata icon

Van Doornik, D. M., S. J. Parker, S. R. Millard, E. A. Berntson, P. Moran. 2008. The next link will exit from NWFSC web site Multiple paternity is prevalent in Pacific ocean perch (Sebastes alutus) off the Oregon coast and is correlated with female size and age. Environmental Biology of Fishes, 83(3):269-275.Go to metadata icon

Waples, R. S., A. E. Punt, J. M. Cope. 2008. The next link will exit from NWFSC web site Integrating genetic data into management of marine resources:  how can we do it better? Fish and Fisheries, 9(4):423-449.Go to metadata icon

Waples, R. S., A. P. Hendry. 2008. The next link will exit from NWFSC web site Special issue:  Evolutionary perspectives on salmonid conservation and management. Evolutionary Applications, 1(2):183-188.Go to metadata icon

Waples, R. S., C. Do. 2008. The next link will exit from NWFSC web site LDNE:  a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources, 8(4):753-756.Go to metadata icon

Waples, R. S., G. R. Pess, T. J. Beechie. 2008. The next link will exit from NWFSC web site Evolutionary history of Pacific salmon in dynamic environments. Evolutionary Applications, 1(2):189-206.Go to metadata icon

Waples, R. S., P. B. Adams, J. Bohnsack, B. L. Taylor. 2008. The next link will exit from NWFSC web site Legal viability, societal values, and SPOIR:  response to D'Elia et al. Conservation Biology, 22(4):1075-1077.Go to metadata icon

Waples, R. S., R. W. Zabel, M. D. Scheuerell, B. L. Sanderson. 2008. The next link will exit from NWFSC web site Evolutionary responses by native species to major anthropogenic changes to their ecosystems: Pacific salmon in the Columbia River hydropower system. Molecular Ecology, 17(1):84-96.Go to metadata icon

Waples, R. S., W. W. Dickhoff, L. Hauser, N. Ryman. 2008. Six decades of fishery genetics:  taking stock. Fisheries, 33(2):76-79.Go to metadata icon

Weitkamp, L. A. 2008. The next link will exit from NWFSC web site Buoyancy regulation by hatchery and wild coho salmon during the transition from freshwater to marine environments. Transactions of the American Fisheries Society, 137(3):860-868.Go to metadata icon

Weitkamp, L. A., M. V. Sturdevant. 2008. The next link will exit from NWFSC web site Seasonal, interannual, and babitat-specific food habits of jevenile Chinook and coho salmon from marine waters of Southeast Alaska. Fisheries Oceanography, 17(5):380-395.Go to metadata icon

West, J. E., S. M. O'Neill, G. M. Ylitalo. 2008. Spatial extent, magnitude, and patterns of persistent organochlorine pollutants in Pacific herring (Clupea pallasi) populations; implications for the Puget Sound and Strait of Georgia pelagic food web. Science of the Total Environment, 394:369-378.Go to metadata icon

Wiens, G. D., D. D. Rockey, Z. Wu, J. Chang, R. Levy, S. Crane, D. S. Chen, G. R. Capri, J. R. Burnett, P. S. Sudheesh, M. J. Schipma, H. Burd, A. Bhattacharyya, L. D. Rhodes, R. Kaul, M. S. Strom. 2008. The next link will exit from NWFSC web site The genome sequence of the fish pathogen Renibacterium salmoniarum suggests reductive evolution away from an environment Arthrobacter ancestor. Journal of Bacteriology, 190(21):6970-6982.Go to metadata icon

Williams, J. G. 2008. The next link will exit from NWFSC web site Mitigating the effects of high-head dams on the Columbia River, USA:  experience from the trenches. Hydrobiologia, 609(1):241-251.Go to metadata icon

Williams, J. G., R. W. Zabel, R. S. Waples, J. A. Hutchings, W. P. Connor. 2008. The next link will exit from NWFSC web site Potential for anthopogenic disturbances to influence evolutionary change in the life history of a threatened salmonid. Evolutionary Applications, 1(2):271-285.Go to metadata icon

Winans, G. A., M. L. McHenry, J. Baker, A. Elz, A. Goodbla, E. Iwamoto, D. R. Kuligowski, K. M. Miller, M. P. Small, P. Spruell, D. M. Van Doornik. 2008. The next link will exit from NWFSC web site Genetic inventory of anadromous Pacific salmonids of the Elwha River prior to dam removal. Northwest Science, 82(sp1):128-140.Go to metadata icon

Ylitalo, G. M., M. S. Meyers, B. Stewart, P. K. Yochem, R. Braun, L. Kashinsky, D. Boyd, G. A. Antonelis, S. Atkinson, A. A. Aquirre, M. M. Krahn. 2008. Organochlorine contaminants in blubber and whole blood of Hawaiian monk seals in the northwestern Hawaiian Islands. Marine Pollution Bulletin, 56:231-244.Go to metadata icon

Zabel, R. W., J. R. Faulkner, S. G. Smith, J. J. Anderson, C. V. Holmes, N. Beer, S. Iltis, J. Krinkle, G. Fredericks, B. Bellerud, J. Sweet, A. E. Giorgi. 2008. The next link will exit from NWFSC web site Comprehensive passage (COMPASS) model: a model of downstream migration and survival of juvenile salmonids through a hydropower system. Hydrobiologia, 609(1):289-300.Go to metadata icon

Zuellig, R. E., D. R. Kashian, M. L. Brooks, P. M. Kiffney, W. H. Clements. 2008. The next link will exit from NWFSC web site The influence of metal exposure history and ultraviolet-B radiation on benthic commuities in Colorado Rocky Mountain streams. Journal of the North American Benthological Society, 27(1):120-134.Go to metadata icon