Northwest Fisheries Science Center

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2012

Ainsworth, C. H., H. Morzaria-Luna, I. C. Kaplan, P. S. Levin, E. A. Fulton, R. Cudney-Bueno, P. Turk-Boyer, J. Torre, G. D. Danemann, T. Pfister. 2012. The next link will exit from NWFSC web site New fisheries regulations must be accompanied by effective enforcement: a Gulf of California case study. Marine Policy.Go to metadata icon

Anderson, D. M., G. Doucette, V. L. Trainer, C. A. Scholin, J. Paul, V. L. Trainer. 2012. HARMFUL ALGAL BLOOM (HAB) SENSORS IN OCEAN OBSERVING SYSTEMS. Interagency Ocean Observation Committee summit.Go to metadata icon

Andrews, K. S., T. P. Quinn. 2012. The next link will exit from NWFSC web site Combining fishing and acoustic monitoring data to evaluate the distribution and movement of white-spotted ratfish Hydrolagus colliei. Marine Biology, 159(4):769-782. doi:10.1007/s00227-011-1853-xGo to metadata icon

Ayres, K. L., M. J. Ford, R. K. N., J. Hempelmann, K. Koski, C. K. Emmons, R. W. Baird, K. Balcomb-Bartok, M. B. Hanson, S. K. Wasser. 2012. Distinguishing between inadequate prey and vessel impacts on an endangered killer whale (Orcinus orca) population.Go to metadata icon

Ayres, K. L., R. K. Booth, J. Hempelmann, K. Koski, C. K. Emmons, R. W. Baird, K. Balcomb-Bartok, M. B. Hanson, M. J. Ford, S. K. Wasser. 2012. Distinguishing the Impacts of inadequate Prey and Vessel Traffic on an Endangered Killer Whale (orcinus orca) Populations. PLoS ONE.Go to metadata icon

Baskett, M. L., R. S. Waples. 2012. The next link will exit from NWFSC web site Evaluating alternative strategies for minimizing unintended fitness consequences of cultured individuals on wild populations. Conservation Biology, 27(1):83-94.Go to metadata icon

Bassett, C., B. Polagye, M. M. Holt, J. Thomson. 2012. A vessel noise budget for Admiralty Inlet, Puget Sound, WA (USA). Journal of the Acoustical Society of America.Go to metadata icon

Bi, H., W. T. Peterson, J. O. Peterson, J. L. Fisher. 2012. The next link will exit from NWFSC web site A comparative analysis of coastal and shelf-slope copepod communities in the northern California Current system: Synchronized response to large-scale forcing? Limnology and Oceanography, 57(5):1467-1478. doi:10.4319/lo.2012.57.5.1467Go to metadata icon

Brenkman, S. J., J. J. Duda, C. E. Torgersen, E. Welty, G. R. Pess, R. Peters, M. McHenry. 2012. The next link will exit from NWFSC web site A riverscape perspective of Pacific salmonids and aquatic habitats prior to large-scale dam removal in the Elwha River, Washington, USA. Fisheries Management and Ecology, 19(1):36-53.Go to metadata icon

The next link will exit from NWFSC web site TS Breton, JL Anderson, FW Goetz, DL Berlinsky. (2012). Identification of ovarian gene expression patterns during vitellogenesis in Atlantic cod (Gadus morhua). Gen. Comp. Endoc. 179(2):296-304. Go to metadata icon

Brooks, M. L., E. Fleishman, L. R. Brown, P. W. Lehman, I. Werner, N. L. Scholz, C. Mitchelmore, J. R. Lovvorn, M. L. Johnson, D. Schlenk, S. van Drunick, J. I. Drever, D. M. Stoms, A. E. Parker, R. Dugdale. 2012. Life histories, salinity zones, and sublethal contributions of contaminants to pelagic fish declines illustrated with a case study of San Francisco Estuary, California, USA. Estuaries and Coasts, 35:603-621.Go to metadata icon

Carey, M. P., B. L. Sanderson, K. Barnas, J. D. Olden. 2012. The next link will exit from NWFSC web site Native invaders: emerging challenges for conservation. Frontiers in Ecology and the Environment, 10(7):373-381.Go to metadata icon

Christie, M. R., M. L. Marine, R. L. French, R. S. Waples, M. Blouin. 2012. The next link will exit from NWFSC web site Effective size of a wild salmonid population is greatly reduced by hatchery supplementation. Heredity, 109(4):254-260.Go to metadata icon

Colt, J. E., B. Watten, T. Pfeiffer. 2012. Carbon Dioxide Stripping in Aquaculture - Part III. Model Vertification. Aquacultural Engineering, 47(1):47-59. doi:doi:10.1026/j.aquaeng.2011.12.007Go to metadata icon

Colt, J. E., B. Watten, T. Pfeiffer. 2012. Carbon Dioxide Stripping in Aquaculture - Part II: Development of gas transfer models. Aquacultural Engineering, 47(1):38-46. doi:doe:10.1016/j.aquaeng.2011.12.002Go to metadata icon

Colt, J., B. Watten, T. Pfeiffer. 2012. Carbon Dixoide Stripping in Aquaculture. Part 1: Terminology and Reporting. Aquacultural Engineering, 47(1):27-37. doi:doi10.1016J.aqueng.2011.12.008Go to metadata icon

Cope, J. M., M. A. Haltuch. 2012. Temporal and spatial summer groundfish assemblages in trawlable habitat off the U.S. West Coast: 1977 to 2009. Marine Ecology Progress Series, 451:187-200. doi:10.3354/meps09595Go to metadata icon

Corbett, S. C., M. L. Moser, A. H. Dittman. 2012. The next link will exit from NWFSC web site Experimental evaluation of adult spring Chinook salmon radio-tagged during the late stages of spawning migration. North American Journal of Fisheries Management, 32(5):853-858.Go to metadata icon

Cram, J., C. E. Torgersen, R. Klett, G. R. Pess, D. May, T. N. Pearsons, A. H. Dittman. 2012. The next link will exit from NWFSC web site Tradeoffs between homing and habitat quality for spawning site selection by hatchery-origin Chinook salmon. Environmental Biology of Fishes, 96(1):109-122.Go to metadata icon

Daly, E. A., R. D. Brodeur, J. P. Fisher, L. A. Weitkamp, D. J. Teel, B. R. Beckman. 2012. The next link will exit from NWFSC web site Spatial and trophic overlap of marked and unmarked Columbia River Basin spring Chinook salmon during early marine residence with implications for competition between hatchery and naturally produced fish. Environmental Biology of Fishes, 94(1):117-134.Go to metadata icon

Eberhart, B. L., B. D. Bill, V. L. Trainer. 2012. Remote sampling of harmful algal blooms: A case study on the Washington State coas. Harmful Algae, 19(9):39-45.Go to metadata icon

Enders, E. C., M. H. Gessel, J. J. Anderson, J. G. Williams. 2012. The next link will exit from NWFSC web site Effects of decelerating and accelerating flows on juvenile salmonid behavior. Transactions of the American Fisheries Society, 141(2):357-364.Go to metadata icon

Espinasse, B., M. Zhou, Y. Zhu, E. L. Hazen, A. S. Friedlaender, D. P. Nowacek, D. Chu, F. Carlotti. 2012. Austral fallwinter transition of mesozooplankton assemblages and krill aggregations in an embayment west of the Antarctic Peninsula. Marine Ecology Progress Series, 452:63-80. doi:10.3354/meps09626Go to metadata icon

Evans, A. F., N. J. Hostetter, D. D. Roby, K. Collis, D. E. Lyons, B. P. Sandford, R. D. Ledgerwood, S. H. Sebring. 2012. The next link will exit from NWFSC web site Systemwide evaluation of avian predation on juvenile salmonids from the Columbia River based on recoveries of passive integrated transponder tags. Transactions of the American Fisheries Society, 141(4):975-989.Go to metadata icon

Ford, M. J., A. R. Murdoch, S. Howard. 2012. The next link will exit from NWFSC web site Early male maturity explains a negative correlation in reproductive success between hatchery-spawned salmon and their naturally spawning progeny. Conservation Letters, 5(6):450-458.Go to metadata icon

Francis, T. B., M. D. Scheuerell, P. S. Levin, R. D. Brodeur, N. Tolimieri, J. J. Ruzicka, W. T. Peterson. 2012. The next link will exit from NWFSC web site Climate shifts the interaction web of a marine plankton community. Global Change Biology, 18(8):24982508.Go to metadata icon

Guerry, A. D., M. H. Ruckelshaus, K. K. Arkema, J. R. Bernhardt, G. Guannel, C. Kim, M. Marsik, M. Papenfus, J. E. Toft, G. Verutes, S. A. Wood, M. Beck, F. Chan, K. M. Chan, G. Gelfenbaum, B. D. Gold, B. S. Halpern, W. B. Labiosa, S. E. Lester, P. S. Levin, M. McField, M. L. Pinsky, M. Plummer, S. Polasky, P. Ruggiero, D. A. Sutherland, H. Tallis, A. Day, J. Spencer. 2012. The next link will exit from NWFSC web site Modelling benefits from nature:  using ecosystem services to inform coastal and marine spatial planning. International Journal of Biodiversity Science, Ecosystem Services & Management, 8(1-2):107-121. doi:10.1080/21513732.2011.647835Go to metadata icon

Gustafson, R. G., M. J. Ford, P. B. Adams, J. S. Drake, R. L. Emmett, K. L. Fresh, M. Rowse, E. A. Spangler, R. E. Spangler, D. J. Teel, M. T. Wilson. 2012. The next link will exit from NWFSC web site Conservation status of eulachon in the California Current. Fish and Fisheries, 13(2):121-138.Go to metadata icon

Halpern, B. S., K. L. McLeod, C. Longo, D. Hardy, J. F. Samhouri, S. K. Katona, K. Kleisner, S. E. Lester, J. O'Leary, M. Ranelletti, A. A. Rosenberg, C. Scarborough, E. R. Selig, B. D. Best, D. R. Brumbaugh, F. S. Chapin, L. B. Crowder, K. L. Daly, S. C. Doney, C. Elfes, M. J. Fogarty, S. D. Gaines, K. I. Jacobsen, L. B. Karrer, H. Leslie, E. Neeley, D. Pauly, S. Polasky, B. Ris. 2012. The next link will exit from NWFSC web site An index to assess the health and benefits of the global ocean. Nature, 488:615-620.Go to metadata icon

Harvey, C. J., G. D. Williams, P. S. Levin. 2012. Food web structure and trophic controls in central Puget Sound. Estuaries and Coasts, 35:821-838. doi:10.1007/s12237-012-9483-1Go to metadata icon

Harvey, C. J., P. E. Moriarty, E. P. Salathe Jr. 2012. Modeling climate change impacts on overwintering bald eagles. Ecology and Evolution, 2(3):501-514. doi:10.1002/ece3.204Go to metadata icon

Harvey, C. J., T. P. Good, S. F. Pearson. 2012. Top-down influence of resident and overwintering bald eagles in a model marine ecosystem. Canadian Journal of Zoology, 90:903-914.Go to metadata icon

Hilborn, R., I. J. Stewart, T. A. Branch, O. Jensen. 2012. Defining trade-offs among conservation, profitability, and food security in the California Current bottom-trawl fishery. Conservation Biology, 26(2):257-266.Go to metadata icon

Hipfner, M. J., L. K. Blight, R. W. Lowe, S. I. Wilhelm, G. J. Robertson, R. T. Barrett, T. Anker-Nilssen, T. P. Good. 2012. The next link will exit from NWFSC web site Unintended consequences: how the recovery of sea eagle Haliaeetus spp. populations in the northern hemisphere is affecting seabirds. Marine Ornithology, 40(1):39-52.Go to metadata icon

Holland, D.S. and G.E. Hererra.The Impact of Age, Structure, Uncertainty, and Asymmetric Spatial Dynamics on Regulatory Performance in Fishery Metapopulation. Ecological Economics  77(5):207-218 DOI information: 10.1016/j.ecolecon.2012.03.003Go to metadata icon

Holland, D.S., Jannot, J.E., 2112. Bycatch risk pools for the US West Coast Groundfish Fishery, Ecol. Econ. 78:132-147.doi:10.1016/j.ecolecon.2012.04.010Go to metadata icon

Holmes, E. E., E. J. Ward, K. Wills. 2012. The next link will exit from NWFSC web site MARSS: multivariate autoregressive state-space models for analyzing time-series data. R Journal, 4(1):11-19.Go to metadata icon

Holsman, K. K., M. D. Scheuerell, E. Buhle, R. L. Emmett. 2012. The next link will exit from NWFSC web site Interacting effects of translocation, artificial propagation, and environmental conditions on the marine survival of Chinook salmon from the Columbia River, Washington, U.S.A. Conservation Biology, 26(5):912-922.Go to metadata icon

Holt, M. M., A. Ghoul, C. Reichmuth. 2012. Temporal summation of airborne tones in a California sea lion. Journal of the Acoustical Society of America.Go to metadata icon

Holt, M. M., D. P. Noren, C. K. Emmons. 2012. An investigation of sound use and behavior in a killer whale (Orcinus orca) population to inform passive acoustic monitoring studies. Marine Mammal Science. doi:DOI: 10.1111/j.1748-7692.2012.00599.xGo to metadata icon

Hutchings, J. A., S. H. Butchart, B. Collen, M. K. Schwartz, R. S. Waples. 2012. The next link will exit from NWFSC web site Red flags:  correlates of impaired species recovery. Trends in Ecology and Evolution, 27(10):542-546.Go to metadata icon

Incardona, J., C. A. Vines, B. F. Anulacion, D. H. Baldwin, H. L. Day, B. L. French, J. S. Labenia, T. L. Linbo, M. S. Myers, O. P. Olson, C. A. Sloan, S. Y. Sol, F. J. Griffin, K. Menard, S. G. Morgan, E. H. Smith, J. E. West, T. K. Collier, G. M. Ylitalo, G. N. Cherr, N. L. Scholz. 2012. Unexpectedly high mortality in Pacific herring embryos exposed to the 2007 Cosco Busan oil spill in San Francisco Bay. Proceedings of the National Academy of Sciences, USA, 109(2):E51-E58.Go to metadata icon

Incardona, J.P., Vines, C.A., Linbo, T.L., Myers, M.S., Labenia, J.S., French, B.L., Olson, O.P., Sol, S.Y., Willis, M.L., Jarvis, M., Newman, J., Meeks, D. Menard, K., Sloan, C.A., Baldwin, D.H., Ylitalo, G.M., Collier, T.K., Cherr, G.N. and Scholz, N.L. 2012 Potent phototoxicity of marine bunker oil to translucent herring embryos after prolonged weathering. PLoS ONE 7(2): e30116. Go to metadata icon

Iwamoto, E., J. M. Myers, R. G. Gustafson. 2012. The next link will exit from NWFSC web site Resurrecting an extinct salmon evolutionarily significant unit: archived scales, historical DNA and implications for restoration. Molecular Ecology, 21(7):1567-1582.Go to metadata icon

Jackson, A. D., M. L. Moser. 2012. The next link will exit from NWFSC web site Low-evaluation dams are impediments to adult Pacific lamprey spawning migration in the umatilla River, Oregon. North American Journal of Fisheries Management, 32(3):548-556.Go to metadata icon

Jacobson, K. C., R. Baldwin, D. C. Reese. 2012. Parasite communities indicate effects of cross-shelf distributions but not mesoscale oceanographic features on Northern California Current mid-trophic food web. Marine Ecology Progress Series, 454:19-36.Go to metadata icon

Johnson, C. L., P. Roni, G. R. Pess. 2012. The next link will exit from NWFSC web site Adult fitness as a primary factor limiting egg-to-fry survival of spring Chinook salmon (Oncorhynchus tshawytscha) in the upper Yakima River Basin. Transactions of the American Fisheries Society, 141(5):1295-1309.Go to metadata icon

Johnson, C. N., J. C. Bowers, K. J. Griffitt, V. Molina, R. W. Clostio, S. Pei, E. Laws, R. N. Paranjpye, M. S. Strom, A. Chen, N. A. Hasan, A. Huq, N. F. Noriea III, D. J. Grimes, R. R. Colwell. 2012. The next link will exit from NWFSC web site Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the coastal and estuarine waters of Louisiana, Maryland, Mississippi, and Washington (United States). Applied and Environmental Microbiology, 78(20):7249-7257.Go to metadata icon

Kalinowski, S. T., D. M. Van Doornik, C. C. Kozfkay, R. S. Waples. 2012. The next link will exit from NWFSC web site Genetic diversity in the Snake River sockeye salmon captive broodstock program as estimated from broodstock records. Conservation Genetics, 13(5):1183-1193.Go to metadata icon

Kaplan, I. C., I. A. Gray, P. S. Levin. 2012. Cumulative Impacts of Fisheries in the California Current. Fish and Fisheries. doi:10.1111/j.1467-2979.2012.00484.xGo to metadata icon

Kaplan, I. C., J. Leonard. 2012. From Krill to Convenience Stores: Forecasting the Economic and Ecological Effects of Fisheries Management on the US West Coast. Marine Policy, 36:947-954.Go to metadata icon

Kaplan, I. C., P. Horne, P. S. Levin. 2012. Screening California Current Fishery Management Scenarios using the Atlantis End-to-End Ecosystem Model. Progress in Oceanography, 102:5- 18.Go to metadata icon

Keller, A. A., J. Harms, J. C. Buchanan. 2012. Distribution, biomass and size of grooved Tanner crabs (Chionoecetes tanneri) from annual bottom trawl surveys (2003-2010) along the U.S. west coast (Washington to California). Deep Sea Research Part I: Oceanographic Research, (67)44-54.Go to metadata icon

Keller, A. A., K. J. Molton, A. C. Hicks, M. A. Haltuch, C. R. Wetzel. 2012. Variation in age and growth of greenstriped rockfish (sebastes elongatus) along the U.S. West Coast (Washington to California). Fisheries Research.Go to metadata icon

Keller, A., J. R. Wallace, B. H. Horness, O. S. Hamel, I. J. Stewart. 2012. Variations in Eastern North Pacific Demersal Fish Biomass Based on The U.S. West Coast Groundfish Bottom Trawl Survey (2003-2010). Fishery Bulletin, 110:63-80.Go to metadata icon

Kim C-K, Toft JE, Papenfus M, Verutes G, Guerry AD, et al. (2012) Catching the Right Wave: Evaluating Wave Energy Resources and Potential Compatibility with Existing Marine and Coastal Uses. PLoS ONE 7(11): e47598. doi:10.1371/journal.pone.0047598Go to metadata icon

Knott, K. K., D. Boyd, G. M. Ylitalo, T. M. O'Hara. 2012. The next link will exit from NWFSC web site Lactational transfer of mercury and polychlorinated biphenyls in polar bears. Chemosphere, 88(4):395-402. doi:10.1016/j.chemosphere.2012.02.053Go to metadata icon

Kodama, M., J. J. Hard, K. A. Naish. 2012. Temporal variation in natural selection on body length and date of return in a wild population of coho salmon, Oncorhynchus kisutch. BMC Evolutionary Biology, 12:116. doi:doi:10.1186/1471-2148-12-116Go to metadata icon

LaHood, E., O. Schlei, J. Wenburg and P. Moran 2012. Microsatellite allele ladder-based standardization: an application in Oncorhynchus tshawytscha. Molecular Ecology Resources. Vol. 12, pp. 185-189. DOI: 10.1111/j.1755-0998.2011.03088.xGo to metadata icon

Lefebvre, K. A., E. R. Frame, F. Gulland, J. D. Hansen, P. Kendrick, R. P. Beyer, T. K. Bammler, F. M. Farin, E. M. Hiolski, D. Smith, D. J. Marcinek. 2012. The next link will exit from NWFSC web site A novel marker for chronic domoic acid exposure identified in zebrafish and validated in sea lions. Journal of Shellfish Research, 31(1):311-311.Go to metadata icon

Lefebvre, K. A., E. R. Frame, P. Kendrick. 2012. The next link will exit from NWFSC web site Domoic acid and fish behavior:  a review. Harmful Algae, 13(2012):126-130.Go to metadata icon

Levin, P. S., P. Horne, K. Andrews, G. Williams. 2012. A multi-scale empirical movement model for sixgill sharks in Puget Sound: combining observed and unobserved behavior. Current Zoology, 58(1):103-115.Go to metadata icon

Lewitus, A.J., Horner, R.A., Caron, D.A., Garcia-Mendoza, E., Hickey, B.M., Hunter, M., Huppert, D.D., Kelly, D., Kudela, R.M., Langlois, G.W., Largier, J.L., Lessard, E.J., RaLond, R., Rensel, J.E., Strutton, P.G., Trainer, V.L., Tweddle, J.F. 2012. Harmful Algal Blooms along the North American West Coast Region: History, Trends, Causes, and Impacts. Harmful Algae. 19: 133-159.Go to metadata icon

Link, J. S., T. F. Ihde, C. J. Harvey, S. K. Gaichas, J. C. Field, J. K. Brodziak, H. M. Townsend, R. M. Peterman. 2012. Dealing with Uncertainty in Ecosystem Models: The Paradox of Use for Living Marine Resource Management. Progress in Oceanography, 102:102-114.Go to metadata icon

Lomeli, M. J., W. W. Wakefield. 2012. Efforts to reduce Chinook salmon (Oncorhynchus tshawytscha) and rockfish (Sebastes spp.) bycatch in the U.S. west coast Pacific hake (Merluccius productus) fishery.Go to metadata icon

Lopez, J., D. Boyd, G. M. Ylitalo, C. Littnan, R. W. Pearce. 2012. Persistent organic pollutants in the Hawaiian monk seal (Monachus schauinslandi) from an important population: the Main Hawaiian Islands. Marine Pollution Bulletin, 64:2588-2598.Go to metadata icon

McIntyre, J. K., D. H. Baldwin, D. A. Beauchamp, N. L. Scholz. 2012. Low-level copper exposures increase visibility and vulnerability of juvenile coho salmon to cutthroat trout predators. Ecological Applications, 22:1460-1471.Go to metadata icon

Metzger, D. C., J. A. Luckenbach, M. Shimizu, B. R. Beckman. 2012. Normalizing for biology: Accounting for technical and biological variation in levels of reference gene and insulin-like growth factor 1 (igf1) transcripts in fish livers. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology, 163:7-14. doi:10.1016/j.cbpa.2012.04.014Go to metadata icon

The next link will exit from NWFSC web site Mongillo TM, Holmes EE, Noren DP, VanBlaricom GR and others (2012) Predicted polybrominated diphenyl ether (PBDE) and polychlorinated biphenyl (PCB) accumulation in southern resident killer whales. Mar Ecol Prog Ser 453:263-277Go to metadata icon

Moore, M. E., B. A. Berejikian, E. P. Tezak. 2012. Variation in the early marine survival and behavior of natural and hatchery-reared Hood Canal steelhead. PLoS ONE.Go to metadata icon

The next link will exit from NWFSC web site Moore M, Berejikian BA, Tezak EP (2012) Variation in the Early Marine Survival and Behavior of Natural and Hatchery-Reared Hood Canal Steelhead. PLoS One 7(11): e49645. doi:10.1371/journal.pone.0049645Go to metadata icon

Moriarty, P. E., K. S. Andrews, C. J. Harvey, M. Kawase. 2012. The next link will exit from NWFSC web site Vertical and horizontal movement patterns of scyphozoan jellyfish in a fjord-like estuary. Marine Ecology Progress Series, 455:1-12.Go to metadata icon

Morley, S. A., J. D. Toft, K. Hanson. 2012. The next link will exit from NWFSC web site Ecological effects of shoreline armoring on intertidal habitats of a Puget Sound urban estuary. Estuaries and Coasts, 35(3):774-784.Go to metadata icon

Morzaria Luna, H. N., C. H. Ainsworth, I. C. Kaplan, P. S. Levin, E. A. Fulton. 2012. The next link will exit from NWFSC web site Trade-offs between fisheries and conservation of the critically endangered vaquita (Phocoena sinus). PLoS ONE, 7(8):e42917. doi:10.1371/journal.pone.0042917Go to metadata icon

Moser, M. L., D. S. Lee. 2012. The next link will exit from NWFSC web site Foraging over Sargassum by western North Atlantic seabirds. The Wilson Journal of Ornithology, 124(1):66-72.Go to metadata icon

Neely, K. G., J. M. Myers, J. J. Hard. 2012. The next link will exit from NWFSC web site A comparison of early development between a domesticated strain of coho salmon (Oncorhynchus kisutch) and its parental stock. Transactions of the American Fisheries Society, 141:1504-1509.Go to metadata icon

Nielsen, E. E., A. Cariani, E. Mac Aoidh, G. E. Maes, I. Milano, R. Ogden, M. Taylor, J. Hemmer-Hansen, M. Babbucci, L. Bargelloni, D. Bekkevold, E. Diopere, L. Greenfell, S. Helyar, M. T. Limborg, J. T. Martinsohn, R. McEwing, F. Panitz, T. Patarnello, F. Tinti, J. K. Van Houdt, F. A. Volckaert, R. S. Waples, FishPopTrace Consortium, G. R. Carvalho. 2012. The next link will exit from NWFSC web site Gene-associated markers provide tools for tackling illegal fishing and false eco-certification. Nature Communications, 2012(3):No. 851.Go to metadata icon

Paranjpye, R. N., O. S. Hamel, A. Stojanovski, M. Liermann. 2012. The next link will exit from NWFSC web site Genetic diversity of clinical and environmental Vibrio parahaemolyticus strains from the Pacific Northwest. Applied and Environmental Microbiology, 78(24):8631-8638.Go to metadata icon

Pess, G. R., M. Liermann, M. L. McHenry, R. J. Peters, T. R. Bennett. 2012. The next link will exit from NWFSC web site Juvenile salmonid response to the replacement of engineered logjams (ELJS) in the Elwha River, Washington State, USA. River Research and Applications, 28(7):872-881.Go to metadata icon

Pess, G. R., R. Hilborn, K. Kloehn, T. P. Quinn. 2012. The next link will exit from NWFSC web site The influence of population dynamics and environmental conditions on pink salmon (Oncorhynchus gorbuscha) recolonization after barrier removal in the Fraser River, British Columbia, Canada. Canadian Journal of Fisheries and Aquatic Sciences, 69(5):970-982.Go to metadata icon

Pitchon, A., K. C. Norman. 2012. Fishing off the Dock and Under the Radar in Los Angeles County: Demographics and Risks. Bulletin of the Southern California Academy of Sciences, 111(2).Go to metadata icon

Plummer, M., C. J. Harvey, L. E. Anderson, A. Guerry, M. H. Ruckelshaus. 2012. The role of eelgrass in marine community interactions and ecosystem services: Results from ecosystem-scale food web models. Ecosystems, 16:237-251.Go to metadata icon

Pollock, M. M., T. J. Beechie, H. Imaki. 2012. The next link will exit from NWFSC web site Using reference conditions in ecosystem restoration: an example for riparian conifer forests in the Pacific Northwest. Ecosphere, 3(11):1-23.Go to metadata icon

Pool, S. S., D. C. Reese, R. D. Brodeur. 2012. The next link will exit from NWFSC web site Defining marine habitat of juvenile Chinook salmon, Oncorhynchus tshawytscha, and coho salmon, O. kisutch, in the northen California Current System. Environmental Biology of Fishes, 93(2):233-243.Go to metadata icon

Quinn, T. P., A. H. Dittman, H. Barrett, C. Cunningham, M. H. Bond. 2012. Chemosensory responses of juvenile coho salmon, Oncorhynchus kisutch, Dolly Varden, Salvelinus malma, and sculpins (Cottus spp.) to eggs and other tissues from adult Pacific salmon. Environmental Biology of Fishes, 95:301-307.Go to metadata icon

Rice, C. A., J. J. Duda, C. M. Greene, J. R. Karr. 2012. The next link will exit from NWFSC web site Geographic patterns of fishes and jellyfish in Puget Sound surface waters. Marine and Coastal Fisheries, 4(1):117-128.Go to metadata icon

Roegner, G. C., R. A. McNatt, D. J. Teel, D. L. Bottom. 2012. The next link will exit from NWFSC web site Distribution, size, and origin of juvenile Chinook salmon in shallow water habitats of the lower Columbia River and estuary, 2002-2007. Marine and Coastal Fisheries, 4(1):450-472.Go to metadata icon

Roni, P., T. R. Bennett, R. Holland, G. R. Pess, K. Hanson, R. E. Moses, M. McHenry, W. Ehinger, J. Walter. 2012. The next link will exit from NWFSC web site Factors affecting migration timing, growth and survival of juvenile coho salmon in two coastal Washington watersheds. Transactions of the American Fisheries Society, 141(4):890-906.Go to metadata icon

Rupp, D. E., T. C. Wainwright, P. W. Lawson. 2012. The next link will exit from NWFSC web site Effect of forecast skill on management of the Oregon Coast coho salmon (Oncorhynchus kisutch) fishery. Canadian Journal of Fisheries and Aquatic Sciences, 69(6):1016-1032.Go to metadata icon

Ruzicka, J. J., R. D. Brodeur, R. L. Emmett, J. H. Steele, J. E. Zamon, C. A. Morgan, A. C. Thomas, T. C. Wainwright. 2012. The next link will exit from NWFSC web site Interannual variability in the Northern California Current food web structure: changes in energy flow pathways and the role of forage fish, euphausiids, and jellyfish. Progress in Oceanography, 102(1):19-41.Go to metadata icon

Samhouri, J. F., P. S. Levin. 2012. Linking land- and sea-based activities to risk in coastal ecosystems. Biological Conservation. Biological Conservation, 145:118-129. doi:10.1016/j.biocon.2011.10.021Go to metadata icon

Samhouri, J. F., S. E. Lester, E. R. Selig, B. S. Halpern, M. J. Fogarty, C. Longo, K. L. McLeod. 2012. Sea sick? Setting targets to assess ocean health and ecosystem services. Ecosphere, 3(5):41. doi:http://dx.doi.org/10.1890/ES11-00366.1Go to metadata icon

Sandford, B. P., R. W. Zabel, L. G. Gilbreath, S. G. Smith. 2012. The next link will exit from NWFSC web site Exploring latent mortality of juvenile salmonids related to migration through the Columbia River hydropower system. Transactions of the American Fisheries Society, 141(2):343-352.Go to metadata icon

Scheef, L. P., D. E. Pendleton, S. E. Hampton, S. L. Katz, E. E. Holmes, M. D. Scheuerell, D. G. Johns. 2012. The next link will exit from NWFSC web site Assessing marine plankton community structure from long-term monitoring data with multivariate autoregressive (MAR) models: a comparison of fixed station vs. spatially distrubted sampling data. Limnology and Oceanography: Methods, 10:54-64.Go to metadata icon

Scholz, N. L., E. Fleishman, L. Brown, I. Werner, M. L. Johnson, M. L. Brooks, C. L. Michelmore, D. Schlenk. 2012. A perspective on modern pesticides, pelagic fish declines, and unknown ecological resilience in highly managed ecosystems. Bioscience, 62(4):428-434.Go to metadata icon

Steel, E. A., A. E. Tillotson, D. A. Larsen, A. H. Fullerton, K. P. Denton, B. R. Beckman. 2012. The next link will exit from NWFSC web site Beyond the mean: The role of variability in predicting ecological effects of stream temperature on salmon. Ecosphere, 3(11):104.Go to metadata icon

Steel, E. A., D. W. Jensen, K. M. Burnett, K. Christiansen, J. C. Firman, B. E. Feist, K. J. Anlauf, D. P. Larsen. 2012. The next link will exit from NWFSC web site Landscape characteristics and coho salmon (Oncorhynchus kisutch) distributions:  explaining abundance versus occupancy. Canadian Journal of Fisheries and Aquatic Sciences, 69(3):457-468.Go to metadata icon

Suchman, C. L., R. D. Brodeur, E. A. Daly, R. L. Emmett. 2012. The next link will exit from NWFSC web site Large medusae in surface waters of the Northern California Current: variability in relation to environmental conditions. Hydrobiologia, 690(1):113-125.Go to metadata icon

Takahashi, M., D. M. Checkley, Jr., M. N. Litz, R. D. Brodeur, W. T. Peterson. 2012. The next link will exit from NWFSC web site Responses in growth rate of larval northern anchovy to anomalous upwelling in the northern California Current. Fisheries Oceanography, 21(6):393-404.Go to metadata icon

Tallis, H., S. E. Lester, M. H. Ruckelshaus, M. Plummer, K. L. McLeod, A. D. Guerry, S. Andelman, M. Caldwell, M. Conte, S. Copps, D. Fox, R. Fujita, S. D. Gaines, G. Gelfenbaum, B. Gold, P. Kareiva, C. Kim, K. Lee, M. Papenfus, S. Redman, B. Silliman, L. Wainger, C. White. 2012. New Metrics for Managing and Sustaining the Ocean's Bounty. Marine Policy, 36(1):303-306. doi:http://dx.doi.org/10.1016/j.marpol.2011.03.013Go to metadata icon

Tallmon, D. A., R. S. Waples, D. P. Gregovich, M. K. Schwartz. 2012. The next link will exit from NWFSC web site Detecting population recovery using gametic-disequilibrium based effective population size estimates. Conservation Genetics Resources, 4(4):987-989.Go to metadata icon

Thorson, J. T., I. J. Stewart, A. E. Punt. 2012. Agent-based model evaluation of methods to estimate annual abundance for shoaling fishes such as Pacific rockfish (Sebastes spp.). ICES Journal of Marine Science, 69(4):635-647.Go to metadata icon

Thorson, J. T., J. M. Cope, T. A. Branch, O. Jensen. 2012. Biomass targets for exploited marine fishes, incorporating taxonomic and life history information. Canadian Journal of Fisheries and Aquatic Sciences, 69(9):1556-1568. doi:10.1139/f2012-077Go to metadata icon

Tomaro, L. M., D. J. Teel, W. T. Peterson, J. A. Miller. 2012. The next link will exit from NWFSC web site When is bigger better? Early marine residence of middle and upper Columbia River spring Chinook salmon. Marine Ecology Progress Series, 452:237-252.Go to metadata icon

Trainer, V.L., Bates, S.S., Lundholm, N., Thessen, A.E., Adams, N.G., Cochlan, W.P., Trick, C.G. 2012. Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health. Hamful Algae. 14, 271-300.Go to metadata icon

Vrijenhoek, R. C., R. S. Waples. 2012. The next link will exit from NWFSC web site Popular misconceptions. Molecular Ecology, 21(17):4155-4156.Go to metadata icon

Walters, A. W., D. M. Holzer, J. R. Faulkner, C. Warren, P. D. Murphy, M. M. McClure. 2012. Quantifying cumulative entrainment impacts for Chinook salmon (Oncorhynchus tshawytscha) in heavily irrigated watershed. Transactions of the American Fisheries Society.Go to metadata icon

Ward, E., G. R. Pess, K. Anlauf-Dunn, C. E. Jordan. 2012. The next link will exit from NWFSC web site Applying time series models with spatial correlation to identify the scale of variation in habitat metrics related to threatened coho salmon (Oncorhynchus kisutch) in the Pacific Northwest. Canadian Journal of Fisheries and Aquatic Sciences, 69(11):1773-1782.Go to metadata icon

Warren, D. R., M. M. McClure. 2012. Quantifying salmon-derived nutrient loads from the mortality of hatchery-origin juvenile Chinook salmon in the Snake River basin. Transactions of the American Fisheries Society, 141(5):1287-1294. doi:10.1080/00028487.2012.686950Go to metadata icon

Weitkamp, L. A., P. J. Bentley, M. N. Litz. 2012. The next link will exit from NWFSC web site Seasonal and interannual variation in juvenile salmonids and associated fish assemblage in open waters of the lower Columbia River estuary. Fishery Bulletin, 110(4):426-450.Go to metadata icon

Westley, P. A., E. J. Ward, I. Fleming. 2012. The next link will exit from NWFSC web site Fine-scale local adaptation in an invasive freshwater fish has evolved in contemporary time. Proceedings of the Royal Society of London. Series B, 280(1751).Go to metadata icon

Williams, G. D., K. S. Andrews, S. L. Katz, M. L. Moser, N. Tolimieri, D. A. Farrer, P. S. Levin. 2012. The next link will exit from NWFSC web site Scale and pattern of broadnose sevengill shark Notorynchus cepedianus movement in estuarine embayments. Journal of Fish Biology, 80(5):1380-1400.Go to metadata icon

Williams, J. G., G. Armstrong, C. Katopodis, M. Larinier, F. Travade. 2012. The next link will exit from NWFSC web site Thinking like a fish: a key ingredient for development of effective fish passage facilities at hydropower dams. River Research and Applications, 28(4):407-417.Go to metadata icon

Ylitalo, G. M., M. M. Krahn, W. W. Dickhoff, J. E. Stein, C. Walker, C. L. Lassitter, S. Garrett, L. L. Desfosse, K. M. Mitchell, B. T. Noble, S. Wilson, N. B. Beck, R. A. Benner, P. N. Koufopoulos, R. W. Dickey. 2012. The next link will exit from NWFSC web site Federal seafood safety response to the Deepwater Horizon oil spill. Proceedings of the National Academy of Sciences, 109(50):20274-20279.Go to metadata icon

Zabel, R. W., P. S. Levin, N. Tolimieri, N. Mantua. 2012. The next link will exit from NWFSC web site Interactions between climate and population density in the episodic recruitment of bocaccio, Sebastes paucispinis, a Pacific rockfish. Fisheries Oceanography, 20(4):294-304.Go to metadata icon