Northwest Fisheries Science Center

Publications: Journal Article

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2013

Anderson, J. H., G. R. Pess, P. M. Kiffney, T. R. Bennett, P. Faulds, T. P. Quinn. 2013. The next link will exit from NWFSC web site Dispersal and tributary immigration by juvenile coho salmon contribute to spatial expansion during colonisation. Ecology of Freshwater Fish, 22(1):30-42.Go to metadata icon

Anderson, J. J., E. Gurarie, C. Bracis, B. J. Burke, K. L. Laidre. 2013. The next link will exit from NWFSC web site Modeling climate change impacts on phenology and population dynamics of marine migrating species. Ecological Modelling, 264(24):8397.Go to metadata icon

Anderson, L. E., S. T. Lee, P. S. Levin. 2013. Costs of Delaying Conservation: Regulations and the Recreational Values of Rockfish and Co-occurring Species. Land Economics, 89(2):371-385.Go to metadata icon

Anderson, L. E., S. T. Lee. 2013. Untangling the Recreational Value of Wild and Hatchery Salmon. Marine Resource Economics, 28(2):175-197.Go to metadata icon

Andrews, K. S., C. J. Harvey. 2013. The next link will exit from NWFSC web site Ecosystem-level consequences of movement: seasonal variation in the trophic impact of a top predator. Marine Ecology Progress Series, 473:247-260. doi:10.3354/meps10095Go to metadata icon

Baker, M. R., P. Swanson, G. Young. 2013. Injuries from non-retention in gillnet fisheries suppress reproductive maturation in escaped stocks. PLoS ONE.Go to metadata icon

Bangen, S., J. M. Wheaton, N. Bouwes, B. Bouwes, C. E. Jordan. 2013. A methodological intercomparison of topographic survey techniques for characterizing in-stream habitat. Geomorphology.Go to metadata icon

Baskett, M. L., S. C. Burgess, R. S. Waples. 2013. The next link will exit from NWFSC web site Assessing strategies to minimize unintended tness consequences of aquaculture on wild populations. Evolutionary Applications, 6(7):1090-1108.Go to metadata icon

Basu, N., J. Head, D. Nam, R. Pilsner, M. Carvan, H. M. Chan, F. W. Goetz, C. Murphy, K. Rouvinen-Watt, A. Scheuhammer. 2013. The next link will exit from NWFSC web site Effects of methylmercury on epigenetic markers in three model species: Mink, chicken and yellow perc. Comparative Biochemistry and Physiology, Part C: Toxicology and Pharmocology, 157(3):322-327.Go to metadata icon

Beechie, T. J., H. Imaki, J. Greene, A. Wade, H. Wu, G. R. Pess, P. Roni, J. Kimball, J. Stanford, P. M. Kiffney, N. Mantua. 2013. The next link will exit from NWFSC web site Restoring salmon habitat for a changing climate. River Research and Applications, 29(8):939-960.Go to metadata icon

Bellman, M. A., E. Heery. 2013. Discarding and fishing mortality trends in the U.S. west coast groundfish demersal trawl fishery. Fisheries Research, 147:115126.Go to metadata icon

Berejikian, B. A., L. A. Campbell, R. Bush. 2013. Maternal control over offspring life history in a partially anadromous species (Oncorhynchus mykiss). Transactions of the American Fisheries Society, 70:756-765.Go to metadata icon

Bill, B. D., W. P. Cochlan, V. L. Trainer. 2013. The effect of Light on Growth Rate and Primary Productivity in Pseudo-nitzschia australis and Pseudo-nitzschia turgidula. Proceedings of the 14th International Conference on Harmful Algae.Go to metadata icon

Bodey, T., E. J. Ward, R. A. Phillips, R. A. McGill, S. Bearhop. 2013. Species versus Guild Level Differentiation Revealed Across the Annual Cycle by Isotopic Niche Examination. Journal of Animal Ecology, 83:470-478. doi:10.1111/1365-2656.12156Go to metadata icon

Burgess, S. C., R. S. Waples, M. L. Baskett. 2013. The next link will exit from NWFSC web site Local adaptation when competition depends on phenotypic similarity. Evolution, 67(10):3012-3022.Go to metadata icon

Burke, B. J., M. Liermann, D. J. Teel, J. J. Anderson. 2013. The next link will exit from NWFSC web site Environmental and geospatial factors drive juvenile Chinook salmon distribution during early ocean migration. Canadian Journal of Fisheries and Aquatic Sciences, 70(8):1167-1177.Go to metadata icon

Burke, B. J., W. T. Peterson, B. R. Beckman, C. A. Morgan, E. A. Daly, M. N. Litz. 2013. The next link will exit from NWFSC web site Multivariate models of adult Pacific salmon returns. PLoS ONE, 8(1):e54134.Go to metadata icon

Burrows, D. G., W. L. Reichert, M. B. Hanson. 2013. Effects of decomposition and storage conditions on the ´13C and ´15N isotope values of killer whale (Orcinus orca) skin and blubber tissues. Marine Mammal Science. doi:10.1111/mms.12706Go to metadata icon

Busch, D. S., C. J. Harvey, P. McElhany. 2013. Potential impacts of ocean acidification on the Puget Sound food web. ICES Journal of Marine Science, 70(4):823-833. doi:doi: 10.1093/icesjms/fst061Go to metadata icon

Busch, D. S., C. M. Greene, T. P. Good. 2013. The next link will exit from NWFSC web site Estimating effects of tidal power projects and climate change on threatened and endangered marine species and their food web. Conservation Biology, 27(6):1190-1200.Go to metadata icon

Busch, D. S., M. B. Sheer, K. M. Burnett, P. McElhany, T. Cooney. 2013. The next link will exit from NWFSC web site Landscape-level model to predict spawning habitat for Lower Columbia fall Chinook salmon (Oncorhynchus tshawytscha). River Research and Applications, 29(3):297-312. doi:10.1002/rra.1597Go to metadata icon

Busch, D. S., P. McElhany, M. H. Ruckelshaus, D. A. Boughton, T. Cooney, P. W. Lawson, S. T. Lindley, M. M. McClure, N. J. Sands, B. C. Spence, T. C. Wainwright, T. H. Williams. 2013. A Practical Comparison of Viability Models Used for Management of Endangered and Threatened Anadromous Pacific Salmonids. North American Journal of Fisheries Management, 33:1125-1141. doi:10.1080/02755947.2013.824933Go to metadata icon

Bærum, K. M., T. O. Haugen, P. M. Kiffney, E. M. Olsen, L. A. Vøllestad. 2013. The next link will exit from NWFSC web site Interacting effects of temperature and density on individual growth performance in a wild population of brown trout. Freshwater Biology, 58(7):1329-1339.Go to metadata icon

Caudill, C. C., M. L. Keefer, T. S. Clabough, G. P. Naughton, B. J. Burke, C. Peery. 2013. The next link will exit from NWFSC web site Indirect effects of impoundment on migrating fish: temperature gradients in fish ladders slow dam passage by adult Chinook salmon and steelhead. PLoS ONE, 8(12):e85586.Go to metadata icon

Chittaro, P. M., J. D. Hogan. 2013. The next link will exit from NWFSC web site Patterns of connectivity among populations of a coral reef fish. Coral Reefs, 32(2):341-354.Go to metadata icon

Chittaro, P. M., R. W. Zabel, W. A. Palsson, C. Grandin. 2013. The next link will exit from NWFSC web site Population interconnectivity and implications for recovery of a species of concern, the Pacific hake of Georgia Basin. Marine Biology, 160:1157-170.Go to metadata icon

Claxton, A. T., K. C. Jacobson, M. Bhuthimethee, D. J. Teel, D. L. Bottom. 2013. The next link will exit from NWFSC web site Parasites in subyearling Chinook salmon (Oncorhynchus tshawytscha) suggest increased habitat use in wetlands compared to sandy beach habitats in the Columbia River estuary. Hydrobiologia, 717(1):27-39.Go to metadata icon

Cochlan, W. P., V. L. Trainer, C. G. Trick, M. L. Wells, B. L. Eberhart, B. D. Bill. 2013. Heterosigma akashiwo in the Salish Sea: Defining growth and toxicity leading to fish kills. Proceedings of the 15th International Conference on Harmful Algae.Go to metadata icon

Coe, H. J., X. Wei, P. M. Kiffney. 2013. The next link will exit from NWFSC web site Linking forest harvest and landscape factors to benthic macroinvertebrate communities in the interior of British Columbia. Hydrobiologia, 717(1):65-84.Go to metadata icon

Colt, J. E., E. L. Kroeger. 2013. Impact of Aeration and Alkalinity on the Water Quality and Product Quality of Transported Tilapia - A Simulation Study. Aquacultural Engineering. doi:10.1016/j.aquaeng.2013.03.002Go to metadata icon

Cope, J. 2013. Implementing Stock Synthesis as a tool for deriving overfishing levels in data-limited situations. Fisheries Research, 142:3-14. doi:doi:10.1016/j.fishres.2012.03.006Go to metadata icon

Daly, E. A., R. D. Brodeur, T. D. Auth, W. T. Peterson. 2013. The next link will exit from NWFSC web site Winter ichthyoplankton biomass as a predictor of early summer prey fields and survival of juvenile salmon in the northern California Current. Marine Ecology Progress Series, 484:203-217.Go to metadata icon

Dietrich, J. P., M. S. Myers, S. A. Strickland, A. L. Van Gaest, M. R. Arkoosh. 2013. Toxicity of Forest Fire Retardant Chemicals to Stream-type Chinook Salmon Undergoing Parr-Smolt Transformation. Environmental Toxicology and Chemistry, 32(1):326-347. doi:10.1002/etc.2052Go to metadata icon

Do, C., R. S. Waples, D. Peel, G. M. Macbeth, B. J. Tillett, J. R. Ovenden. 2013. The next link will exit from NWFSC web site NEESTIMATOR v2.0: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Molecular Ecology Resources, 14(1):209-214.Go to metadata icon

Dorner, B., K. R. Holt, R. M. Peterman, C. E. Jordan, D. P. Larsen, A. R. Olsen, O. I. Abul-Aziz. 2013. Estimation of the relative contributions of climatic vs. other factors to changes in salmon productivity in the North Pacific region. Fisheries Research.Go to metadata icon

Eberhart, B. L., L. K. Moore, N. Harrington, N. G. Adams, J. A. Borchert, V. L. Trainer. 2013. Screening tests for the rapid detection of diarrhetic shellfish toxins in Washington State. Marine Drugs.Go to metadata icon

Falke, J. A., J. B. Dunham, C. E. Jordan, K. M. McNyset, G. H. Reeves. 2013. Habitat complementation, ecological neighbourhoods, and local factors predict the distribution and abundance of spawning by steelhead (Oncorhynchus mykiss) across a complex riverscape. PLoS ONE.Go to metadata icon

Foley, M., M. Armsby, M. Caldwell, A. L. Erickson, J. N. Kittinger, L. B. Crowder, P. S. Levin. 2013. Improving ocean management through the use of ecological principles and intergrated ecosystem assessments. Bioscience, 63:619-631.Go to metadata icon

Frischkorn, K., A. Stojanovski, R. Paranjpye. 2013. Vibrio parahaemolyticus type IV pili mediate interactions with diatom-derived chitin and point to an unexplored mechanism of environmental persistence. Environmental Microbiology, 15(5):1416-1427.Go to metadata icon

Guy, T. J., S. L. Jennings, R. M. Suryan, E. F. Melvin, M. A. Bellman, L. T. Ballance, B. A. Blackie, D. A. Croll, T. Deguchi, T. O. Geernaert, R. W. Henry, M. Hester, K. D. Hyrenbach, J. Jahncke, K. Ozaki, J. Roletto, F. Sato, S. A. Shaffer, W. J. Sydeman, J. E. Zamon. 2013. The next link will exit from NWFSC web site Overlap of North Pacific albatrosses with the U.S. west coast groundfish and shrimp fisheries. Fisheries Research, 147:222-234.Go to metadata icon

Guzman, J. M., J. A. Luckenbach, P. Swanson. 2013. Molecular characterization and quantification of sablefish (Anoplopoma fimbria) gonadotropins and their receptors: Reproductive dysfunction in female captive broodstock. General and Comparative Endocrinology, 193:37-47. doi:http://dx.doi.org/10.1016/j.ygcen.2013.07.007Go to metadata icon

Hale, M., F. P. Thrower, E. A. Berntson, M. Miller, K. M. Nichols. 2013. Evaluating adaptive divergence between migratory and nonmigratory ecotypes of a salmonid fish, Oncorhynchus mykiss. Genes, Genomes, Genetics, 3:1273-1285. doi:10.1534/g3.113.006817Go to metadata icon

Haltuch, M. A., O. S. Hamel, K. R. Piner, P. McDonald, C. C. Kastelle, J. Field. 2013. A California current bomb radiocarbon reference chronology and petrale sole age validation. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Hampton, S. E., E. E. Holmes, L. P. Scheef, M. D. Scheuerell, S. L. Katz, D. E. Pendleton, E. J. Ward. 2013. The next link will exit from NWFSC web site Quantifying effects of abiotic and biotic drivers on community dynamics with multivariate autoregressive (MAR) models. Ecology, 94(12):2663-2669.Go to metadata icon

Hanson, M. B., C. K. Emmons, E. J. Ward, J. A. Nystuen, M. O. Lammers. 2013. Assessing the coastal occurrence of endangered killer whales using autonomous passive acoustic recorders. Journal of the Acoustical Society of America, 134(5):3486-3495. doi:dx.doi.org/10.1121/1.4821206Go to metadata icon

Harding, L. B., I. R. Schulz, G. W. Goetz, J. A. Luckenbach, G. Young, F. W. Goetz, P. Swanson. 2013. High-throughput sequencing and pathway analysis reveal alteration of the pituitary transcriptome by 17-alpha ethynylestradiol (EE2) in female coho salmon, Oncorhychus kisutch. Aquatic Toxicology.Go to metadata icon

Hedrick, P. W., F. W. Allendorf, R. S. Waples. 2013. The next link will exit from NWFSC web site Genetic engineering in conservation. Nature, 502(7471):303.Go to metadata icon

Hershberger, P., L. D. Rhodes, G. Kurath, J. Winton. 2013. The next link will exit from NWFSC web site Infectious diseases of fishes in the the Salish Sea. Fisheries, 38(9):402-409.Go to metadata icon

Hickey, B.M., Trainer, V.L., Kosro, M.P., Adams, N.G., Connolly, T.P., Kachel, N.B., Geier, S.L. 2013. A springtime source of toxic Pseudo-nitzschia on razor clam beaches in the Pacific Northwest. Harmful Algae. doi: 10.1016/j.hal.2013.01.006.Go to metadata icon

Hockersmith, E. E., G. T. Brooks, N. D. Dumdei, S. Achord. 2013. The next link will exit from NWFSC web site A lightweight battery for backpack electrofishing. North American Journal of Fisheries Management, 33(2):265-268.Go to metadata icon

Holland, D.S. 2013. Making Cents Out of Barter Data from the British Columbia Groundfish ITQ Market. Marine Resource Economics 28(4):311-30.Go to metadata icon

Holland, D. S., A. Kitts, P. Pinto da Silva, W. Joshua. 2013. Social Capital and the Success of Harvest Cooperatives in the New England Groundfish Fishery. Marine Resource Economics, 28(2):133-153.Go to metadata icon

Holtgrieve, G. W., M. E. Arias, K. M. Irvine, D. Lamberts, E. J. Ward, M. Kummu, J. Koponen, J. Sarkkula, J. E. Richey. 2013. Patterns of Ecosystem Metabolism in the Tonle Sap Lake, Cambodia with Links to Capture Fisheries. PLoS ONE, 8(8):e71395. doi:http://dx.doi.org/10.1371/journal.pone.0071395Go to metadata icon

Howard, J., E. Babij, R. Griffis, B. Helmuth, A. Himes-Cornell, P. Niemier, M. Orbach, L. Petes, S. Allen, G. Auad, R. Beard, M. Boatman, N. Bond, T. Boyer, D. Brown, P. Clay, K. Crane, S. Cross, M. Dalton, J. Diamond, R. Diaz, E. Duffy, D. Fauquier, W. Fisher, M. Graham, B. Halpern, L. Hansen, B. Hayum, S. Herrick, A. Hollowed, D. Hutchins, E. Jewett, D. Jin, N. Knowlton, D. Kotowicz, T. Kristiansen, P. Little, C. Lopez, P. Loring, R. Lumpkin, A. Mace, K. Mengerink, J. R. Morrison, J. Murray, K. C. Norman, J. O'Donnell, J. Overland, R. Parsons, N. Pettigrew, L. Pfeiffer, E. Pidgeon, M. Plummer, J. Polovina, J. Quintrell, T. Rowles, J. Runge, M. B. Rust, E. Sanford, U. Send, M. Singer, C. Speir, D. Stanitski, C. Thornber, C. Wilson, Y. Xue. 2013. Oceans and Marine Resources in a Changing Climate. Oceanography and Marine Biology: Annual Review, 51.Go to metadata icon

Incardona, J.P., Swarts, T.H., Edmunds, R.C., Sloan, C.A., and Scholz, N.L. 2013. Exxon Valdez to Deepwater Horizon: comparable toxicity of both crude oils to fish early life stages. Aquatic Toxicology, 142-143:303-316.Go to metadata icon

Jannot, J.E. and D.S. Holland 2013. Identifying ecological and fishing drivers of bycatch in a U.S. groundfish fishery. Ecological Applications 23(7):1645-58.Go to metadata icon

Johnson, L. L., B. F. Anulacion, M. R. Arkoosh, O. P. Olson, C. A. Sloan, S. Y. Sol, J. A. Spromberg, D. J. Teel, G. K. Yanagida, G. M. Ylitalo. 2013. The next link will exit from NWFSC web site Persistent organic pollutants in juvenile Chinook salmon in the Columbia Basin:  implications for stock recovery. Transactions of the American Fisheries Society, 142(1):21-40.Go to metadata icon

Jorgensen, J. C., M. M. McClure, M. B. Sheer, N. L. Munn. 2013. Combined effects of climate change and bank stabilization on shallow water habitats of Chinook salmon. Munn, N. L. Conservation Biology, 27(6):1201-1211.Go to metadata icon

Jorgenson, B., Brown, L., Fleishman, E., Macneale, K.H., Schlenk, D., Scholz, N.L., Spromberg, J.A., Werner, I., Weston, D., Young, T.M., Zhang, M., and Zhao, Q. 2013. Predicted transport of pyrethroid insecticides from an urban landscape to surface water. Environmental Toxicology and Chemistry, 32:2469-2477.Go to metadata icon

Kaplan, I.C., D.S. Holland and E.A Fulton 2013. Finding the gas pedal and brake in an individual quota fishery: Linking ecology, economics, and fleet dynamics to evaluate alternative management strategies for US West Coast trawl fisheries. ICES Journal of Marine Science 71(2)308-319. doi 10.1093/icesjms/fst114.Go to metadata icon

Kaplan, I. C., I. A. Gray, J. C. Field, A. D. Smith, E. A. Fulton, C. L. Brown. 2013. Impacts of depleting forage species in the California Current. Environmental Conservation.Go to metadata icon

Kasperski, S. and D.S. Holland 2013. Income Diversification and Risk for Fishermen. Proceedings of the National Academy of Science. 100(6):2076-2081.  doi: 10.1073/pnas.1212278110Go to metadata icon

The next link will exit from NWFSC web site  

Keller, A.A., Bradburn, M.J. and V.H. Simon. 2013. Shifts in condition and distribution of eastern North Pacific flatfish along the U.S. west coast (2003 – 2010). Deep-Sea Res I 77:23-35Go to metadata icon

Kleisner, K., C. Longo, M. Coll, B. S. Halpern, D. Hardy, F. Le Manach, D. Pauly, A. A. Rosenberg, J. F. Samhouri, C. Scarborough, U. R. Sumaila, R. Watson, D. Zeller. 2013. Exploring patterns of seafood provision revealed in the Ocean Health Index. Ambio, 42(8):910-922. doi:10.1007/s13280-013-0447-xGo to metadata icon

Laetz, C. A., D. H. Baldwin, V. Hebert, J. D. Stark, N. L. Scholz. 2013. The interactive neurobehavioral toxicity of diazinon, malathion, and ethoprop to juvenile coho salmon. Environmental Science & Technology, 47(6):2925-2931.Go to metadata icon

Lanman, C. W., K. Lundquist, H. Perryman, J. Asarian, B. Dohlman, R. B. Lanman, M. M. Pollock. 2013. The historical range of beaver (Castor canadensis) in coastal California: an updated review of the evidence. California Fish and Game, 99(4):193-221.Go to metadata icon

Larsen, D. A., D. L. Harstad, C. R. Strom, M. V. Johnston, C. M. Knudsen, D. E. Fast, T. N. Pearsons, B. R. Beckman. 2013. The next link will exit from NWFSC web site Early life history variation in hatchery and natural origin spring Chinook salmon in the Yakima River, Washington. Transactions of the American Fisheries Society, 142(2):540-555.Go to metadata icon

Lee, J. S., E. P. Tezak, B. A. Berejikian. 2013. Ontogenetic Changes in Dispersal and Habitat use in Hatchery-Reared Lingcod. Reviews in Fisheries Science, 21(3-4):267-275. doi:10.1080/10641262.2013.799391Go to metadata icon

Lee, J. S., E. P. Tezak, B. A. Berejikian. 2013. Telemetry tag effects on juvenile lingcod movement: a lab & field study. Journal of Fish Biology, 82(6):1848-1857. doi:10.1111/jfb.12111Go to metadata icon

Leslie, H. A., E. Goldman, K. L. McLeod, L. Sievanen, H. Balasubramanian, A. Feuerstein, N. Knowlton, K. Lee, R. Pollnac, J. F. Samhouri. 2013. The next link will exit from NWFSC web site How good science and stories can go hand-in-hand. Conservation Biology, 27(5):1126-1129. doi:10.1111/cobi.12080Go to metadata icon

Lisi, P. J., D. E. Schindler, G. R. Pess. 2013. The next link will exit from NWFSC web site Association between geomorphic attributes of watersheds, water temperature, and salmon spawn timing in Alaskan streams. Geomorphology, 185:78-86.Go to metadata icon

Litz, M. N., R. L. Emmett, P. J. Bentley, A. M. Claiborne, C. Barceló. 2013. The next link will exit from NWFSC web site Biotic and abiotic factors influencing forage fish and pelagic nekton community in the Columbia River plume (USA) throughout the upwelling season 1999-2009. ICES Journal of Marine Science, 71(1):5-18.Go to metadata icon

Lomeli, M.J.M, W.W. Wakefield. 2013. A flexible sorting grid to reduce Pacific halibut (Hippoglossus stenolepis) bycatch in the US west coast groundfish bottom trawl fishery, Fisheries Research 143:102-108.Go to metadata icon

Luckenbach, J. A., Y. Yamamoto, J. M. Guzman, P. Swanson. 2013. Identification of ovarian genes regulated by follicle-stimulating hormone (Fsh) in vitro during early secondary oocyte growth in coho salmon. Molecular and Cellular Endocrinology, 366:38-52. doi:http://dx.doi.org/10.1016/j.mce.2012.11.015Go to metadata icon

Maynard, D. J., J. G. Trial. 2013. The Use of Hatchery Technology for the Conservation of Pacific and Atlantic Salmon. Reviews in Fish Biology and Fisheries.Go to metadata icon

McClure, M. M., L. G. Crozier, D. A. Boughton, M. A. Alexander, S. T. Lindley, J. Nye, M. J. Rowland, E. E. Seney, A. Snover, K. Van Houtan. 2013. The next link will exit from NWFSC web site Incorporating climate science in applications of the U.S. Endangered Species Act for aquatic species. Conservation Biology, 27(6):1222-1233.Go to metadata icon

McElhany, P., D. S. Busch. 2013. The next link will exit from NWFSC web site Appropriate pCO2 treatments in ocean acidification experiments. Marine Biology, 160(8):1807-1812.Go to metadata icon

McHuron, E. A., D. J. Greig, K. Colegrove, M. Fleetwood, T. R. Spraker, F. M. Gulland, J. T. Harvey, K. A. Lefebvre, E. R. Frame. 2013. The next link will exit from NWFSC web site Domoic acid exposure, clinical signs, and histopathology in Pacific harbor seals (Phoca vitulina richardii). Harmful Algae, 23:28-33.Go to metadata icon

Metzger, D. C., J. A. Luckenbach, J. T. Dickey, B. R. Beckman. 2013. Development of a multiplex gene expression assay for components of the endocrine growth axis in coho salmon. General and Comparative Endocrinology, 189:134-140. doi:http://dx.doi.org/10.1016/j.ygcen.2013.04.022Go to metadata icon

Millar, R. B., C. E. Jordan. 2013. A simple variance formula for spawner abundance estimated using trapezoidal area-under-the-curve. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Miller, J. A., D. J. Teel, A. M. Baptista, C. A. Morgan. 2013. Disentangling bottom-up and top-down effects on survival during early ocean residence in a population of Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences, 70:617- 629.Go to metadata icon

Miller, T. W., K. L. Bosley, J. Shibata, R. D. Brodeur, K. Omori, R. L. Emmett. 2013. The next link will exit from NWFSC web site Contribution of prey to Humboldt squid Dosidicus gigas in the northern California Current, revealed by stable isotope analyses. Marine Ecology Progress Series, 477:123-134.Go to metadata icon

Moore, J. M., K. A. Curtis, R. L. Lewsison, P. W. Dillingham, J. M. Cope, S. V. Fordham, S. Heppell, S. A. Pardo, C. A. Simpendorfer, G. Tuck, S. Zhou. 2013. Evaluating sustainability of fisheries bycatch for marine megafauna: conservation reference points for data-limited populations. Environmental Conservation, 40(04):329-344. doi:doi:10.1017/S037689291300012XGo to metadata icon

Moore, M. E., B. A. Berejikian, E. P. Tezak. 2013. A floating bridge disrupts seaward migration and increases mortality of steelhead smolts in Hood Canal, Washington State. PLoS ONE.Go to metadata icon

Moran, P., D. J. Teel, M. A. Banks, T. D. Beacham, M. R. Bellinger, S. M. Blankenship, J. R. Candy, J. C. Garza, J. E. Hess, S. R. Narum, L. W. Seeb, W. D. Templin, C. G. Wallace, C. T. Smith. 2013. Divergent life-history races do not represent Chinook salmon coast-wide: the importance of scale in Quaternary biogeogrqaphy.Go to metadata icon

Morzaria-Luna, H., C. H. Ainsworth, I. C. Kaplan, P. S. Levin, E. A. Fulton. 2013. Indirect effects of conservation policies on the coupled human-natural ecosystem of the Gulf of California. PLoS ONE, 8.5:e64085.Go to metadata icon

Moser, M. L., M. L. Moser, M. S. Myers, M. S. Myers, J. E. West, J. E. West, S. M. O'Neill, B. J. Burke. 2013. The next link will exit from NWFSC web site English sole spawning migration and evidence for feeding site fidelity in Puget Sound, USA, with implications for contaminant exposure. Northwest Science, 87(4):317-325.Go to metadata icon

Naman, S. M., P. M. Kiffney, G. R. Pess, T. W. Buehrens, T. R. Bennett. 2013. The next link will exit from NWFSC web site Abundance and body condition of sculpin (Cottids spp.) in a small forest stream following recolonization by juvenile coho salmon Oncorhynchus kisutch. River Research and Applications, 20(3):360-371.Go to metadata icon

Neel, M. C., K. S. McKelvey, N. Ryman, M. W. Lloyd, R. Short Bull, F. W. Allendorf, M. K. Schwartz, R. S. Waples. 2013. The next link will exit from NWFSC web site Estimation of effective population size in continuously distributed populations:  there goes the neighborhood. Heredity, 111(3):189199.Go to metadata icon

Noren, D. P., M. M. Holt, R. C. Dunkin, T. M. Williams. 2013. The metabolic cost of communicative sound production in bottlenose dolphins (Tursiops truncatus). Journal of Experimental Biology, 216:1624-1629.Go to metadata icon

Noren, D. P., S. M. Budge, S. J. Iverson, M. E. Goebel, D. P. Costa, T. M. Williams. 2013. Characterization of Blubber Fatty Acid Signatures in Northern Elephant Seals (Mirounga angustirostris) Over the Postweaning Fast. Journal of Comparative Physiology, B, 183:1065-1074. doi:DOI 10.1007/s00360-013-0773-0Go to metadata icon

Ohms, H. A., M. R. Sloat, G. H. Reeves, C. E. Jordan, J. B. Dunham. 2013. The next link will exit from NWFSC web site Influence of sex, migration distance, and latitude on life history expression in steelhead and rainbow trout (Oncorhynchus mykiss). Canadian Journal of Fisheries and Aquatic Sciences, 71(1):70-80.Go to metadata icon

The next link will exit from NWFSC web site W Olson, E Emmenegger, J Glenn, J Winton, F Goetz. (2013). Comparative susceptibility between three stocks of yellow perch (Perca flavescens) to Great Lakes viral hemorrhagic septicemia virus IVb J. Fish Disease 36(8):711-719.Go to metadata icon

Olson, W., E. Emmenegger, J. Glenn, J. Winton, F. W. Goetz. 2013. The next link will exit from NWFSC web site Expression kinetics of key genes in the early innate immune response to Great Lakes viral hemorrhagic septicemia virus IVb infection in yellow perch (Perca flavescens). Developmental and Comparative Immunology, 41(1):11-19.Go to metadata icon

Ono, K. D.S. Holland and R. Hilborn 2013. How does species association affect mixed stock fisheries management? A comparative analysis of the effect of marine protected areas, discard bans, or individual fishing quotas. Canadian Journal of Fisheries and Aquatic Sciences 70(12): 1792-1804, 10.1139/cjfas-2013-0046.Go to metadata icon

Ann-Marie K. Osterback, Danielle M. Frechette, Andrew O. Shelton, Sean A. Hayes, Morgan H. Bond, Scott A. Shaffer, and Jonathan W. Moore 2013. High predation on small populations: avian predation on imperiled salmonids. Ecosphere 4:art116.http://dx.doi.org/10.1890/ES13-00100.1Go to metadata icon

Paranjpye, Rohinee, Mark Meyers, Evan Yount and Jesssica Thompson. 2012. Zebrafish as a model for Vibrio parahaemolyticus virulence. Infection and Immunity.Go to metadata icon

Parnell, A. C., D. L. Phillips, S. Bearhop, B. X. Semmens, E. J. Ward, J. W. Moore, A. L. Jackson, J. Grey, D. Kelly, R. Inger. 2013. Bayesian Stable Isotope Mixing Models. Environmetrics.Go to metadata icon

Pearson, S. F., P. J. Hodum, T. P. Good, M. Schrimpf, S. M. Knapp. 2013. A model approach for estimating colony size, trends, and habitat associations of burrow-nesting seabirds. Condor, 115(2):356-365.Go to metadata icon

Pearsons, T. N., J. G. Murauskas, D. A. Larsen, B. R. Beckman, A. H. Dittman. 2013. Hitting the Right Target: Rearing Innovations for Conservation Aquaculture. Hatchery International.Go to metadata icon

Peel, D., R. S. Waples, G. M. Macbeth, C. Do, J. R. Ovenden. 2013. The next link will exit from NWFSC web site Accounting for missing data in estimation of contemporary genetic effective population size (Ne). Molecular Ecology Resources, 13(2):243-253.Go to metadata icon

Pershing, A., D. S. Holland. 2013. Fisheries management in a changing climate: lessons from the 2012 ocean heat wave in the Northwest Atlantic. Oceanography, 26(2):60-64. doi:10.5670/oceanog.2013.27.Go to metadata icon

Pess, G. R., T. P. Quinn, D. E. Schindler, M. Liermann. 2013. The next link will exit from NWFSC web site Freshwater habitat associations between pink (Oncorhynchus gorbuscha), chum (O. keta), and Chinook salmon (O. tshawytscha) in a watershed dominated by sockeye salmon (O. nerka) abundance. Ecology of Freshwater Fish, 23(3):360-372.Go to metadata icon

Peterson, E. E., J. M. Ver Hoef, D. J. Isaak, J. A. Falke, M. Fortin, C. E. Jordan, K. M. McNyset, P. Monestiez, A. S. Ruesch, A. Sengupta, E. A. Steel, D. M. Theobald, C. E. Torgersen, S. J. Wenger. 2013. Modeling dendritic ecological networks in space: An integrated network perspective. Ecology Letters.Go to metadata icon

Peterson, J. O., C. A. Morgan, W. T. Peterson, E. Di Lorenzo. 2013. The next link will exit from NWFSC web site Seasonal and interannual variation in the extent of hypoxia in the northern California Current from 1998-2012. Limnology and Oceanography, 58(6):2279-2292.Go to metadata icon

Petrou, E., L. Hauser, R. S. Waples, J. E. Seeb, W. D. Templin, D. Gomez-Uchida, L. W. Seeb. 2013. The next link will exit from NWFSC web site Secondary contact and changes in coastal hydrology influence the nonequilibrium population structure of a salmonid (Oncorhynchus keta). Molecular Ecology, 22(23):5848-5860.Go to metadata icon

Phillips, R. B., J. Faber-Hammond, J. A. Luckenbach. 2013. The next link will exit from NWFSC web site The sablefish (Anoplopoma fimbria) karyotype including the location of 5S and 18S rDNA and information on cell culture conditions. Aquaculture Research, 44(11):1801-1804.Go to metadata icon

Phillips, R. B., L. K. Park, K. A. Naish. 2013. The next link will exit from NWFSC web site Assignment of Chinook salmon (Oncorhynchus tshawytscha) linkage groups to specific chromosomes reveals a karyotype with multiple rearrangements of the chromosome arms of rainbow trout (Oncorhynchus mykiss). Genes, Genomes, Genetics, 3(12):2289-2295.Go to metadata icon

Poe, M. R., K. C. Norman, P. S. Levin. 2013. Cultural interactions in coastal environments: key connections and guiding principles for conservation. Conservation Letters.Go to metadata icon

Andre E. Punt; Teresa A'mar; Nicholas A. Bond; Douglas S. Butterworth; Carryn L. de Moor; Jose A. A. De Oliveira; Melissa A. Haltuch; Anne B. Hollowed; Cody Szuwalski 2013. Fisheries management under climate and environmental uncertainty: control rules and performance simulation. doi: 10.1093/icesjms/fst057Go to metadata icon

Reum, J. C., T. E. Essington, C. M. Greene, C. A. Rice, K. L. Fresh. 2013. The next link will exit from NWFSC web site Biotic and abiotic controls on body size during a critical life history stage of a pelagic fish, Pacific herring (Clupea pallasi). Fisheries Oceanography, 22(4):324-336.Go to metadata icon

Rhode, J., A. N. Kagley, K. L. Fresh, F. Goetz, T. P. Quinn. 2013. The next link will exit from NWFSC web site Partial migration and diel movement patterns in Puget Sound coho salmon (Oncorhynchus kisutch). Transactions of the American Fisheries Society, 142(6):1615-1628.Go to metadata icon

Roegner, G. C., E. A. Daly, R. D. Brodeur. 2013. The next link will exit from NWFSC web site Surface distribution of brachyuran megalopae and ichthyoplankton in the Columbia River plume during transition from downwelling to upwelling conditions. Continental Shelf Research.Go to metadata icon

Rosenberger, S. J., W. P. Connor, C. A. Peery, D. J. Milks, M. L. Schuck, J. A. Hesse, S. G. Smith. 2013. The next link will exit from NWFSC web site Acclimation enhances postrelease performance of hatchery fall Chinook salmon subyearlings while reducing the potential for interaction with natural fish. North American Journal of Fisheries Management, 33(3):519-528.Go to metadata icon

Ryan, C., B. McHugh, B. Boyle, P. Lopez-Suarez, C. T. Elfes, D. T. Boyd, G. M. Ylitalo, G. Van Blaricom, P. Clapham, J. Robbins, M. Berube, P. Palsboll, I. O'Connor, S. Berrow. 2013. Levels of Persistent Organic Pollutants in Northeast Atlantic Humpback Whales Megaptera novaeangliae. Endangered Species Research, 22(3):213-223. doi:10.3354/esr00545Go to metadata icon

Samhouri, J. F., A. Haupt, P. S. Levin, J. Link, R. Shuford. 2013. Lessons learned from developing integrated ecosystem assessments to inform marine ecosystem-based management in the USA. ICES Journal of Marine Science. doi:10.1093/icesjms/fst141Go to metadata icon

Satterthwaite, W. H., M. S. Mohr, M. R. O'Farrell, E. Andersen, M. A. Banks, S. J. Bates, M. R. Bellinger, L. A. Borgerson, E. D. Crandall, J. C. Garza, B. J. Kormos, P. W. Lawson, M. Palmer-Zwahlen. 2013. Use of genertic stock identification data for comparison of the ocean spatial distribution, size-at-age, and fishery exposure of Klamath River versus California Coastal Chinook salmon. Transactions of the American Fisheries Society, 147:117-133. doi:10.1080/00028487.2013.837096Go to metadata icon

Schwacke, L. H., C. A. Smith, F. I. Townsend, R. S. Wells, L. B. Hart, B. C. Balmer, T. K. Collier, S. De Guise, M. M. Fry, L. J. Guillette Jr, S. V. Lamb, S. M. Lane, W. E. McFee, N. J. Place, M. C. Tumlin, G. M. Ylitalo, E. S. Zolman, T. Rowles. 2013. Health of bottlenose dolphins (Tursiops truncatus) in the Gulf of Mexico following the Deepwater Horizon oil spill. Environmental Science & Technology, 48:93-103.Go to metadata icon

Sebring, S. H., M. C. Carper, R. D. Ledgerwood, B. P. Sandford, G. M. Matthews, A. F. Evans. 2013. The next link will exit from NWFSC web site Relative vulnerability of PIT-tagged subyearling fall Chinook salmon to predation by Caspian terns and double-crested cormorants in the Columbia River estuary. Transactions of the American Fisheries Society, 142(5):1321-1334.Go to metadata icon

Semmens, B. X., E. J. Ward, A. C. Parnell, D. L. Phillips. 2013. Statistical basis and outputs of stable isotope mixing models: Comment on Fry (2013). Marine Ecology Progress Series.Go to metadata icon

Seney, E. E., M. M. McClure, M. J. Rowland, R. A. Lowery, R. Griffis. 2013. Climate change, marine environments, and the U.S. Endangered Species Act: an overview. Conservation Biology, 27(6):1138-1146. doi:10.1111/cobi.12167Go to metadata icon

Shelton, A. O., D. Kinzey, C. Reiss, S. Munch, G. Watters, M. Mangel. 2013. Among-year variation in growth of Antarctic krill (Euphausia superba) based on length-frequency data. Marine Ecology Progress Series.Go to metadata icon

Shelton, A. O., W. H. Satterthwaite, M. Beakes, S. Munch, S. M. Sogard, M. Mangel. 2013. Separating intrinsic and environmental contributions to growth and their population consequences. American Naturalist.Go to metadata icon

Smith, E. K., J. M. Guzman, J. A. Luckenbach. 2013. Molecular cloning, characterization, and sexually dimorphic expression of five major sex differentiation-related genes in a Scorpaeniform fish, sablefish (Anoplopoma fimbria). Comparative Biochemistry and Physiology Part B: Comparative Biochemistry, 165:125-137. doi:http://dx.doi.org/10.1016/j.cbpb.2013.03.011Go to metadata icon

Snover, A., N. Mantua, J. S. Littell, M. A. Alexander, M. M. McClure. 2013. Choosing and Using Climate Change Scenarios for Ecological Impacts Assessments. Conservation Biology, 27(6):1147-1157. doi:10.1111/cobi.12163Go to metadata icon

Stewart, I. J., A. C. Hicks, I. G. Taylor, J. T. Thorson, C. R. Wetzel, S. Kupschas. 2013. The next link will exit from NWFSC web site A comparison of stock assessment uncertainty estimates using maximum likelihood and Bayesian methods implemented with the same model framework. Fisheries Research, 142(May 2013):37-46. doi:10.1016/j.fishres.2012.07.003Go to metadata icon

Sweka, J. A., T. C. Wainwright. 2013. The next link will exit from NWFSC web site Use of population viability analysis models for Atlantic and Pacific salmon recovery planning. Reviews in Fish Biology and Fisheries, Volume 24(3):901-917. doi:10.1007/s11160-013-9332-8Go to metadata icon

Taylor, I. G., R. D. Methot. 2013. Hiding or dead? A computationally efficient model of selective mortality. Fisheries Research.Go to metadata icon

Taylor, I. G., V. V. Gertseva, R. D. Methot, M. Maunder. 2013. A spawner-recruit relationship based on pre-recruit survival, illustrated with application to spiny dogfish shark. Fisheries Research, (142)15-21.Go to metadata icon

Taylor, I. G., V. V. Gertseva, S. E. Matson. 2013. Spine-based ageing methods in the spiny dogfish shark, Squalus suckleyi: how they measure up. Fisheries Research, 147:83-92. doi:http://dx.doi.org/10.1016/j.fishres.2013.04.011Go to metadata icon

Thorson, J. T., C. Minto, C. Minte-Vera, K. Kleisner, K. Longo. 2013. A new role for effort dynamics in the theory of harvested populations and data-poor stock assessment. Canadian Journal of Fisheries and Aquatic Sciences, 70(12):1829-1844. doi:10.1139/cjfas-2013-0280Go to metadata icon

Thorson, J. T., E. J. Ward. 2013. Accounting for space-time interactions in index standardization models. Fisheries Research.Go to metadata icon

Thorson, J. T., E. J. Ward. 2013. Accounting for space-time interactions in index standardization models. Fisheries Research, 147:426-433.Go to metadata icon

Thorson, J. T., I. J. Stewart, I. G. Taylor, A. E. Punt. 2013. Using a recruitment-linked multispecies stock assessment model to estimate common trends in recruitment for US West Coast groundfishes. Marine Ecology Progress Series.Go to metadata icon

Tolimieri, N., Samhouri, J.F., Simon, V., Feist, B.E. & Levin, P.S. (2013) Linking the trophic fingerprint of groundfishes to ecosystem structure and function in the California Current. Ecosystems, 16, 1216-1229.Go to metadata icon

Trainer, V.L., Moore, L., Bill, B.D., Adams, N.G., Harrington, N., Borchert, J., da Silva, D.AM, Eberhart, B.T.L. 2013. Diarrhetic shellfish toxins and other lipophilic toxins of human health concern in Washington State. Marine Drugs, 11:1815-1835, doi:10.3390/md11061815Go to metadata icon

Turner, J. W., R. N. Paranjpye, E. D. Landis, S. V. Biryukov, N. Gonzalez-Escalona, W. B. Nilsson, M. S. Strom. 2013. Population Structure of Clinical and Environmental Vibrio parahaemolyticus from the Pacific Northwest Coast of the United States. PLoS ONE, 8(2):e55726.Go to metadata icon

Van Daele, M. B., C. T. Robbins, B. X. Semmens, E. J. Ward, L. J. Van Daele, W. B. Leacock. 2013. Salmon consumption by Kodiak brown bears (Ursus arctos middendorffi) with ecosystem management implications. Canadian Journal of Zoology, 91(3):164-174.Go to metadata icon

Van Doornik, D. M., B. A. Berejikian, L. A. Campbell. 2013. The next link will exit from NWFSC web site Gene flow between sympatric life history forms of Oncorhynchus mykiss located above and below migratory barriers. PLoS ONE, 8(11):12.Go to metadata icon

Van Doornik, D. M., D. L. Eddy, R. S. Waples, S. J. Boe, E. A. Berntson, P. Moran. 2013. The next link will exit from NWFSC web site Genetic monitoring of threatened Chinook salmon populations: estimating introgression of non-native hatchery stocks and temporal genetic changes. North American Journal of Fisheries Management, 33(4):693-706.Go to metadata icon

Vizza, C., B. L. Sanderson, D. G. Burrows, H. J. Coe. 2013. The next link will exit from NWFSC web site The effects of ethanol preservation on fish fin stable isotopes: does variation in C:N ratio and body size matter? Transactions of the American Fisheries Society, 142(5):1469-1476.Go to metadata icon

Wainwright, T. C., L. A. Weitkamp. 2013. The next link will exit from NWFSC web site Effects of climate change on Oregon Coast coho salmon: habitat and life-cycle interactions. Northwest Science, 87(3):219-242.Go to metadata icon

Walters, A. W., K. K. Bartz, M. M. McClure. 2013. Interactive impacts of water diversion and climate change for juvenile Chinook salmon in the Lemhi River. Conservation Biology.Go to metadata icon

Walters, A. W., K. K. Bartz, M. M. McClure. 2013. Interactive effects of water diversion and climate change for juvenile Chinook salmon in the Lemhi River Basin. Conservation Biology, 27(6):1179-1189. doi:10.1111/cobi.12170Go to metadata icon

Waples, R. S. (guest editor) 2013. The next link will exit from NWFSC web site Special section:  Incorporating climate change into risk analysis under the U.S. Endangered Species Act. Conservation Biology, 27(6):1137.Go to metadata icon

Waples, R. S., G. Luikart, J. R. Faulkner, D. A. Tallmon. 2013. The next link will exit from NWFSC web site Simple life history traits explain key effective population size ratios across diverse taxa. Proceedings of the Royal Society of London. Series B, 280(1768):1339.Go to metadata icon

Waples, R. S., M. Nammack, J. F. Cochrane, J. A. Hutchings. 2013. The next link will exit from NWFSC web site A tale of two acts: endangered species listing practices in Canada and the United States. Bioscience, 63(9):723-734.Go to metadata icon

Winans, G. A. 2013. The next link will exit from NWFSC web site Twenty five novel microsatellite markers for English sole, Parophrys vetulus. Conservation Genetics Resources, 6(2):417-419.Go to metadata icon

Xu, J., J. W. Turner, M. Idso, S. V. Biryukov, L. Rognstad, H. Gong, V. L. Trainer, M. L. Wells, M. S. Strom, Q. Yu. 2013. In-situ Strain-level Detection and Identification of Vibrio parahaemolyticus Using Surface-enhanced Raman Spectroscopy. Analytical Chemistry, 85:2630-2637.Go to metadata icon

Zabel, R. W., B. J. Burke, M. L. Moser. 2013. The next link will exit from NWFSC web site Modeling temporal phenomena in variable environments with parametric models: an application to migrating salmon. Ecological Modelling, 273:23-30.Go to metadata icon

Zamon, J. E., E. M. Phillips, T. J. Guy. 2013. The next link will exit from NWFSC web site Marine bird aggregations associated with the tidally-driven plume and plume fronts of the Columbia Rvier. Deep Sea Research Part II: Topical Studies in Oceanography, In press.Go to metadata icon

da Silva, D. A., J. Buzitis, W. L. Reichert, J. E. West, S. M. O'Neill, L. L. Johnson, T. K. Collier, G. M. Ylitalo. 2013. Endocrine Disrupting Chemicals in Fish Bile: A Rapid Method of Analysis Using English Sole (Parophrys vetulus) from Puget Sound, WA, USA. Chemosphere, 92(11):1550 - 1556. doi:http://dx.doi.org/10.1016/j.chemosphere.2013.04.027Go to metadata icon