Northwest Fisheries Science Center

Publications: Journal Article

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2014

Anderson, J. H., G. R. Pess, R. W. Carmichael, M. J. Ford, T. Cooney, C. Baldwin, M. M. McClure. 2014. The next link will exit from NWFSC web site Planning Pacific salmon and steelhead reintroductions aimed at long-term viability and recovery. North American Journal of Fisheries Management, 34(1):72-93.Go to metadata icon

Anlauf-Dunn, K., E. J. Ward, M. Strickland. 2014. Habitat connectivity, complexity and quality: Predicting adult coho salmon occupancy and abundance. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Banas, N. S., L. Conway-Cranos, D. A. Sutherland, P. MacCready, P. M. Kiffney, M. Plummer. 2014. The next link will exit from NWFSC web site Patterns of river influence and connectivity among subbasins of Puget Sound, with application to bacterial and nutrient loading. Estuaries and Coasts, 38(3):735-753.Go to metadata icon

Bangen, S., J. Wheaton, N. Bouwes, C. E. Jordan, C. Volk, M. B. Ward. 2014. Crew variability in topgraphic surveys for monitoring instream fish habitat: a case study from the Columbia River Basin. River Research and Applications.Go to metadata icon

Beaudreau, A. H., P. S. Levin. 2014. Advancing the use of local ecological knowledge for assessing data-poor species in coastal ecosystems. Ecological Applications, 24:244-256.Go to metadata icon

Beechie, T. J., H. Imaki. 2014. The next link will exit from NWFSC web site Predicting natural channel patterns based on landscape and geomorphic controls in the Columbia River basin, USA. Water Resources Research, 50(1):1-19.Go to metadata icon

Bennett, T. R., P. Roni, K. P. Denton, M. McHenry, R. E. Moses. 2014. The next link will exit from NWFSC web site Nomads no more: Early juvenile coho salmon migrants contribute to the adult return. Ecology of Freshwater Fish, (early view).Go to metadata icon

Beyer, S. G., S. M. Sogard, C. J. Harvey, J. C. Field. 2014. Variability in rockfish (Sebastes spp.) fecundity: species contrasts, maternal size effects, and spatial differences. Environmental Biology of Fishes.Go to metadata icon

Boldt, J. L., R. G. Martone, J. F. Samhouri, R. I. Perry, S. Itoh, I. K. Chung, M. Takahashi, N. Yoshie. 2014. Developing ecosystem indicators for responses to multiple stressors. Oceanography.Go to metadata icon

Bond, M. H., B. R. Beckman, L. Rohrbach, T. P. Quinn. 2014. Differential growth in estuarine and freshwater habitats indicated by plasma IGF1 concentrations and otolith chemistry in Dolly Varden charr Salvelinus malma. Journal of Fish Biology.Go to metadata icon

Bosley, K. L., T. W. Miller, R. D. Brodeur, K. M. Bosley, A. L. Van Gaest, A. Elz. 2014. The next link will exit from NWFSC web site Feeding ecology of juvenile rockfishes off Oregon and Washington based on stomach content and stable isotope analyses. Marine Biology, 161(10):2381-2393.Go to metadata icon

 

Bradburn, M. and A.A. Keller. 2015. The effect of light on the catch rate of four species from the Northwest Fisheries Science Center’s west coast groundfish bottom trawl survey (2009 – 2010).  Fish. Res. 164:193-200.
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Breckenridge, J. K., S. M. Bollens, G. Rollwagen-Bollens, G. C. Roegner. 2014. The next link will exit from NWFSC web site Plankton assemblage variability in a river-dominated temperate estuary during late spring (high-flow) and late summer (low-flow) periods. Estuaries and Coasts.Go to metadata icon

Brette, F., B. Machado, C. Cros, J. Incardona, N. L. Scholz, B. A. Block. 2014. Crude oil impairs cardiac excitation-contraction coupling in fish. Science, 343:772-776.Go to metadata icon

Brodeur, R. D., C. Barceló, K. L. Robinson, E. A. Daly, J. J. Ruzicka. 2014. The next link will exit from NWFSC web site Spatial overlap between forage fishes and the large medusa Chrysaora fuscescens in the northern California Current region. Marine Ecology Progress Series, 510:167-181.Go to metadata icon

Brodeur, R. D., J. C. Buchanan, R. L. Emmett. 2014. The next link will exit from NWFSC web site Pelagic and demersal fish predators on juvenile and adult forage fishes in the California Current:  spatial and temporal variations. California Cooperative Oceanic Fisheries Investigations Reports, 55.Go to metadata icon

Bryan, D. R., K. L. Bosley, A. C. Hicks, M. A. Haltuch, W. W. Wakefield. 2014. Quantitative video analysis of flatfish herding behavior and impact on effective area swept of a survey trawl. Fisheries Research, Volume 154(June 2014):120126. doi:http://dx.doi.org/10.1016/j.fishres.2014.02.007Go to metadata icon

Brynildsrud, O., E. J. Feil, J. Bohlin, S. Castillo-Ramirez, D. Colquhoun, U. McCarthy, I. M. Matejusova, G. D. Wiens, L. D. Rhodes, D. W. Verner-Jeffreys. 2014. Microevolution of Renibacterium salmoninarum: evidence for intercontinental dissemination associated with fish movements. The International Society for Microbial Ecology Journal, 8(4):746-756. doi:10.1038/ismej.2013.186Go to metadata icon

Buehrens, T. W., P. M. Kiffney, G. R. Pess, T. R. Bennett, S. M. Naman, G. T. Brooks, T. Quinn. 2014. The next link will exit from NWFSC web site Increasing juvenile coho salmon densities during early recolonization have not affected resident coastal cutthroat trout growth, movement, or survival. North American Journal of Fisheries Management, 34(5):892-907.Go to metadata icon

Burke, B. J., J. J. Anderson, A. M. Baptista. 2014. The next link will exit from NWFSC web site Evidence for multiple navigational sensory capabilities by Chinook salmon. Aquatic Biology, 20(1):77-90.Go to metadata icon

Busch, D. S., M. Maher, P. Thibodeau, P. McElhany. 2014. Shell condition and survival of Puget Sound pteropods are impaired by ocean acidification conditions. PLOS ONE, 22.Go to metadata icon

Byron, C. J., B. J. Burke. 2014. The next link will exit from NWFSC web site Salmon ocean migration models suggest a variety of population-specific strategies. Reviews in Fish Biology and Fisheries, 24(3):737-756.Go to metadata icon

Campbell, L. A., D. L. Bottom, E. C. Volk, I. A. Fleming. 2014. The next link will exit from NWFSC web site Correspondence between scale morphometrics and scale and otolith chemistry for interpreting juvenile salmon life histories. Transactions of the American Fisheries Society, 144(1):55-67.Go to metadata icon

Carey, M. P., P. S. Levin, H. M. Townsend, T. J. Minello, G. R. Sutton, T. Francis, C. J. Harvey, J. E. Toft, K. K. Arkema, J. Burke, C. Kim, A. Guerry, M. Plummer, G. Spiridonov, M. H. Ruckelshaus. 2014. The next link will exit from NWFSC web site Characterizing coastal food webs with qualitative links to bridge the gap between the theory and practice of ecosystem-based management. ICES Journal of Marine Science, 71(3):713-724.Go to metadata icon

Chamberlin, J. W., T. P. Quinn. 2014. The next link will exit from NWFSC web site Effects of natal origin on localized distributions of Chinook salmon, Oncorhynchus tshawytscha, in the marine waters of Puget Sound. Fisheries Research, 153:113-122.Go to metadata icon

Chasco, B., E. J. Ward, C. Rabe, R. Kinzer, J. Vogel, J. A. Hesse, P. Kucera. 2014. Using state-space models to evaluate multiple survey methods: a case study for a threatened population of Chinook salmon (Oncorhynchus tshawytscha) in Johnson Creek, Idaho. North American Journal of Fisheries Management.Go to metadata icon

Chen, S., G. McKinney, K. M. Nichols, M. Sepulveda. 2014. In silico prediction and in vivo validation of Daphnia pulex microRNAs. PLoS ONE, 9:e83708. doi:10.1371/journal.pone.0083708Go to metadata icon

Chittaro, P. M., R. W. Zabel, K. Haught, B. L. Sanderson, B. P. Kennedy. 2014. The next link will exit from NWFSC web site Spatial and temporal patterns of growth and consumption by juvenile spring/summer Chinook salmon Oncorhynchus tshawytscha. Environmental Biology of Fishes, preview online.Go to metadata icon

Christie, M. R., M. J. Ford, M. Blouin. 2014. On the reproductive success of early-generation hatchery fish in the wild. Evolutionary Applications. doi:DOI: 10.1111/eva.12183Go to metadata icon

Claiborne, A. M., J. A. Miller, L. A. Weitkamp, D. J. Teel, R. L. Emmett. 2014. The next link will exit from NWFSC web site Evidence for selective mortality in marine environments: the role of fish migration size, timing, and production type. Marine Ecology Progress Series, 515:187-202.Go to metadata icon

Collie, J. S., I. C. Kaplan, .. .. et.al. 2014. Ecosystem Models for Fisheries Management: Finding the Sweet Spot. Fish and Fisheries, 17(1):101125.Go to metadata icon

Colt, J. E. 2014. Impact of stirring on the luminescent optical dissolved oxygen optode. North American Journal of Aquaculture, 76:242-244. doi:10.1080/15222055.2014.893474Go to metadata icon

Cooper, J., S. Diesburg, A. Babej, M. Noon, E. Kahn, M. Puettmann, J. Colt. 2014. Life Cycle Assessment of Products from Alaskan Salmon Byproducts: implications of coproduction, intermittent landings, and storage time. Fisheries Research, 151:26-38. doi:http://dx.doi.org/10.1016/j.fishres.2013.11.015Go to metadata icon

Craig, B. E., C. A. Simenstad, D. L. Bottom. 2014. The next link will exit from NWFSC web site Rearing in natural and recovering tidal wetlands enhances growth and life-history diversity of Columbia Estuary tributary coho salmon Oncorhynchus kisutch populations. Journal of Fish Biology, 85(sp1):31-51.Go to metadata icon

Crozier, L. G., J. A. Hutchings. 2014. The next link will exit from NWFSC web site Plastic and evolutionary responses to climate change in fish. Evolutionary Applications, 7(1):68-87.Go to metadata icon

Cunningham, K. A., S. A. Hayes, A. M. Wargo Rub, C. Reichmuth. 2014. The next link will exit from NWFSC web site Auditory detection of ultrasonic coded transmitters by seals and sea lions. Journal of the Acoustical Society of America, 135(4):1978-1985.Go to metadata icon

Daly, E. A., J. A. Scheurer, R. D. Brodeur, L. A. Weitkamp, B. R. Beckman, J. A. Miller. 2014. The next link will exit from NWFSC web site Juvenile steelhead distribution, migration, growth, and feeding in the Columbia River estuary, plume, and coastal waters. Marine and Coastal Fisheries, 6(1):62-80.Go to metadata icon

Dietrich, J. P., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. R. Arkoosh. 2014. Toxicity of Forest Fire Retardant Chemicals to Chinook Salmon with Different Life History Strategies and Their Potential to Recover Before Seawater Entry. Science of the Total Environment.Go to metadata icon

Dietrich, J. P., A. L. Van Gaest, S. A. Strickland, M. R. Arkoosh. 2014. The Impact of Temperature Stress and Pesticide Exposure on Mortality and Disease Susceptibility of Endangered Pacific Salmon. Chemosphere. doi:http://dx.doi.org/10.1016/j.chemosphere.2014.01.079Go to metadata icon

Doctor, K. K., B. A. Berejikian, J. J. Hard, D. M. Van Doornik. 2014. The next link will exit from NWFSC web site Growth-mediated life history traits of steelhead reveal phenotypic divergence and plastic response to temperature. Transactions of the American Fisheries Society, 143(2):317-333.Go to metadata icon

 

Ebert, D.A., Knuckey, J. and D. Kamikawa. 2014. First eastern North Pacific record of the velvet dogfish, Zameus squamulosus (Chondrichthyes: Squaliformes: Somniosidae). Marine Biodiversity Records, 7: e48, 1-3. doi: 10.1017/S1755267214000499.
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Edmunds, et al. (2014). Toward Enhanced MIQE Compliance: Reference Residual Normalization of qPCR Gene Expression Data. J. Biomol. Tech. 25:2.Go to metadata icon

Ferriss, B. E., M. Trudel, B. R. Beckman. 2014. Assessing marine pelagic ecosystems: Regional and inter-annual trends in marine growth rates of juvenile salmon off the British Columbia coast. Marine Ecology Progress Series.Go to metadata icon

Fisher, J. L., W. T. Peterson, S. G. Morgan. 2014. Does larval advection explain latitudinal differences in recruitment across upwelling regimes? Marine Ecology Progress Series, 503:123-137. doi:10.3354/meps10732Go to metadata icon

Fisher, J. P., L. A. Weitkamp, D. J. Teel, S. A. Hinton, J. A. Orsi, E. Farley, J. F. Morris, M. E. Thiess, R. M. Sweeting, M. Trudel. 2014. The next link will exit from NWFSC web site Early ocean dispersal patterns of Columbia River Chinook and coho salmon. Transactions of the American Fisheries Society, 143(1):252-272.Go to metadata icon

Fleming, I. A., D. L. Bottom, K. K. Jones, C. A. Simenstad, J. F. Craig. 2014. The next link will exit from NWFSC web site Resilience of anadromous and resident salmonid populations. Journal of Fish Biology, 85(sp1):1-7.Go to metadata icon

Foltz, K., R. W. Baird, G. M. Ylitalo, B. A. Jensen. 2014. Cytochrome P4501A1 expression in blubber biopsies of endangered false killer whales (Pseudorca crassidens) and nine other odontocete species from Hawaii. Ecotoxicology, 23(9):1607-1618.Go to metadata icon

Froehlich, H. E., T. E. Essington, A. H. Beaudreau, P. S. Levin. 2014. Movement Patterns and Distributional Shifts of Dungeness Crab (Metacarcinus magister) and English Sole (Parophrys vetulus) During Seasonal Hypoxia. Estuaries and Coasts, 37:449-460.Go to metadata icon

Froese, R., J. T. Thorson, R. Reyes. 2014. Bayesian approach to the estimation of length-weight relationships in fishes. Journal of Applied Ichthyology, 30(1):78-85. doi:10.1111/jai.12299Go to metadata icon

Frost, D. A., W. C. McAuley, B. Kluver, M. R. Wastel, D. J. Maynard, T. A. Flagg. 2014. The next link will exit from NWFSC web site Methods and accuracy of sexing sockeye salmon Oncorhynchus nerka using ultrasound for captive broodstock management. North American Journal of Aquaculture, 76(2):153-158.Go to metadata icon

Giddings, S. N., P. MacCready, B. M., Hickey, N. S. Banas, K. A. Davis, S. A., Siedlecki, V. L. Trainer, R. M. Kudela, N., A. Pelland, Connolly, T.P. 2014. Hindcasts of potential harmful algal bloom transport pathways on the Pacific Northwest coast, J. Geophys. Res. Oceans, 119, 2439–2461, doi:10.1002/2013JC009622.Go to metadata icon

Goetz, F. A., E. Jeanes, M. E. Moore, T. P. Quinn. 2014. Comparative migratory behavior and survival of wild and hatchery steelhead (Oncorhynchus mykiss) smolts in riverine, estuarine, and marine habitats of Puget Sound, Washington. Environmental Biology of Fishes.Go to metadata icon

Good, T. P., S. F. Pearson, P. J. Hodum, D. Boyd, B. F. Anulacion, G. M. Ylitalo. 2014. Persistent organic pollutants in forage fish prey of rhinoceros auklets breeding in Puget Sound and the northern California Current. Marine Pollution Bulletin, 86:367-378. doi:10.1016/j.marpolbul.2014.06.042Go to metadata icon

Guzman, J. M., J. A. Luckenbach, Y. Yamamoto, P. Swanson. 2014. Expression profiles of Fsh-regulated ovarian genes during oogenesis in coho salmon. PLOS ONE.Go to metadata icon

Hale, M., J. Colletti, S. A. Gahr, J. Scardina, F. P. Thrower, M. Harmon, M. Carter, R. A. Phillips, G. H. Thorgaard, C. Rexroad III, K. M. Nichols. 2014. Mapping and expression of candidate genes for development rate in rainbow trout (Oncorhynchus mykiss). Journal of Heredity, 105:506520.Go to metadata icon

Harstad, D. L., D. A. Larsen, B. R. Beckman. 2014. Variation in minijack rate among Columbia River Basin Chinook salmon hatchery populations. Transactions of the American Fisheries Society.Go to metadata icon

Harvey, C. J. 2014. Mediation functions in Ecopath with Ecosim: handle with care. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Head, M. A., A. A. Keller, M. J. Bradburn. 2014. Maturity and growth of sablefish, Anoplopoma fimbria, along the U.S. West Coast. Fisheries Research.Go to metadata icon

Hecht, B. C., M. Valle, F. P. Thrower, K. M. Nichols. 2014. Divergence in Expression of Candidate Genes for the Smoltification Process Between Juvenile Resident Rainbow and Anadromous Steelhead Trout. Marine Biotechnology, 16:638-656. doi:http://www.springer.com/-/10/7f056b78056e4f9791a54a386b451f8aGo to metadata icon

Heery, E., J. M. Cope. 2014. Co-occurrence of demersal fish species in the US west coast bottom trawl fishery. Fishery Bulletin, 112(1):36-48. doi:doi: 10.7755/FB.112.1.3Go to metadata icon

Hill, A. D., E. A. Daly, R. D. Brodeur. 2014. The next link will exit from NWFSC web site Diet variability of forage fishes in the Northern California Current System. Journal of Marine Systems, 146(5):121-130.Go to metadata icon

Hiolski, E. M., P. Kendrick, E. R. Frame, M. S. Myers, T. K. Bammler, R. P. Beyer, F. M. Farin, D. Smith, D. J. Marcinek, K. A. Lefebvre. 2014. The next link will exit from NWFSC web site Chronic low-level domoic acid exposure alters gene transcription and impairs mitochondrial function in the CNS. Aquatic Toxicology, 155:151-159.Go to metadata icon

Incardona, J.P., Gardner, L.D., Linbo, T.L., Swarts, T.L., Esbaugh, A.J., Mager, E.M., Stieglitz, J.D., French, B.L., Labenia, J.S., Laetz, C.A., Tagal, M., Sloan, C.A., Elizur, A., Benetti, D.D., Grosell, M., Block, B.A., and Scholz, N.L. 2014. Deepwater Horizon crude oil toxicity to the developing hearts of large predatory pelagic fish. Proceedings of the National Academy of Sciences, 111: 201320950.Go to metadata icon

Isaak, D. J., E. E. Peterson, J. M. Ver Hoef, S. J. Wenger, J. A. Falke, C. E. Torgersen, C. Sowder, E. A. Steel, M. Fortin, C. E. Jordan, A. S. Ruesch, N. Som, P. Monestiez. 2014. Spatial autocorrelation and statistical analysis on stream networks: overview and applications. WIREs Water.Go to metadata icon

Johnson, G. E., N. K. Sather, J. R. Skalski, D. J. Teel. 2014. Application of diversity indices to quantify early life-history diversity for Chinook Salmon. Ecological Indicators, 38:170-180.Go to metadata icon

Johnson, R. B., E. L. Kroeger, W. L. Reichert, D. Deavila, M. B. Rust. 2014. Abundance and Origins of Plasma Lipids in Sexually Maturing Female Coho Salmon Oncorhynchus kisutch (Walbaum) in Culture. Aquaculture Research, 45:1771-1781. doi:10.1111/are.12122Go to metadata icon

Johnson, R. B., J. K. Kim, L. C. Armbruster, C. Yarish. 2014. Nitrogen allocation of Gracilaria tikvahiae grown in urbanized estuaries of Long Island Sound and New York City, USA: a preliminary evaluation of ocean farmed Gracilaria for alternative fish feeds. Algae, 29(3):227-235. doi:http://dx.doi.org/10.4490/algae.2014.29.3.227Go to metadata icon

Jones, K. K., T. J. Cornwell, D. L. Bottom, L. A. Campbell. 2014. The next link will exit from NWFSC web site The contribution of estuary-resident life histories to the return of adult Oncorhynchus kisutch. Journal of Fish Biology, 85(sp1):52-80.Go to metadata icon

Kagley, A. N., R. G. Snider, E. Casillas. 2014. The next link will exit from NWFSC web site Effects of chemcial contaminants on growth, age-structure, and reproduction of Mytilus edulis complex from Puget Sound, Washington. Bulletin of Environmental Contamination and Toxicology, 93(1):7-12.Go to metadata icon

Keefer, M. L., C. C. Caudill, M. L. Moser. 2014. The next link will exit from NWFSC web site Fishway bottleneck relief models:  a case study using radio–tagged Pacific lampreys. Transactions of the American Fisheries Society, 143(4):1049-1060.Go to metadata icon

Keller, A. A., W. W. Wakefield, C. Whitmire, B. H. Horness, M. A. Bellman, K. L. Bosley. 2014. Distribution of demersal fishes along the U.S. west coast (Canada to Mexico) in relation to spatial fishing closures (2003  2011). Marine Ecology Progress Series, 501:169-190.Go to metadata icon

Kiffney, P. M., E. Buhle, S. M. Naman, G. R. Pess, R. Klett. 2014. The next link will exit from NWFSC web site Linking resource availability and habitat structure to stream organisms: an experimental and observational assessment. Ecosphere, 5(4):39.Go to metadata icon

Kline, P., T. A. Flagg. 2014. Putting the Red back in Redfish Lake - Twenty years of progress towards saving the Pacific Northwest's most endangered salmon population. Fisheries.Go to metadata icon

Kodama, M., M. S. Brieuc, R. H. Devlin, J. J. Hard, K. A. Naish. 2014. Comparative Mapping Between Coho Salmon (Oncorhynchus kisutch) and Three Other Salmonids Suggests a Role for Chromosomal Rearrangements in the Retention of Duplicated Regions Following a Whole Genome Duplication Event. Genes, Genomes, Genetics, 4:1717-1730. doi:10.1534/g3.114.012294Go to metadata icon

Laetz, C. A., D. H. Baldwin, V. Hebert, J. D. Stark, N. L. Scholz. 2014. Elevated temperatures increase the toxicity of pesticide mixtures to juvenile coho salmon. Aquatic Toxicology, 146:38-44.Go to metadata icon

Landguth, E. L., C. C. Muhlfeld, R. S. Waples, L. Jones, W. H. Lowe, D. Whited, J. Lucotch, H. Neville, G. Luikart. 2014. The next link will exit from NWFSC web site Combining demographic and genetic factors to assess population vulnerability in stream species. Ecological Applications, 24(6):1505-1524.Go to metadata icon

Lehuta, S. D.S. Holland and A.J. Pershing 2014. Investigating interconnected fisheries: A coupled model of the lobster and herring fisheries in the Northeast US. Canadian Journal of Fisheries and Aquatic Sciences 71(2):272-289. dx.doi.org/10.1139/cjfas-2013-0185Go to metadata icon

Levin, P. S. 2014. New conservation for the anthropocene ocean. Conservation Letters, 7:338-341.Go to metadata icon

Levin, P. S., C. Möllmann. 2014. Marine ecosystem regime shifts: challenges and opportunities for ecosystem-based management. Philosophical Transactions Royal Society of London, 370. doi:http://dx.doi.org/10.1098/rstb.2013.0275Go to metadata icon

Levin, P. S., C. R. Kelbe, R. Shuford, C. H. Ainsworth, Y. L. deReynier, R. Dunsmore, M. J. Fogarty, K. K. Holsman, E. Howell, M. E. Monaco, S. Oakes, F. E. Werner. 2014. Guidance for Implementation of Integrated Ecosystem Assessments: A U.S. Perspective. ICES Journal of Marine Science.Go to metadata icon

Levin, P. S., J. Azose, S. Anderson. 2014. Biblical influences on marine conservation: An examination of the apparent sustainability of kosher seafood. Ecology and Society, 19((2) 55). doi:10.5751/ES-06524-190255Go to metadata icon

Liermann, M., D. Rawding, G. R. Pess, B. Glaser. 2014. The next link will exit from NWFSC web site The spatial distribution of salmon and steelhead redds and optimal sampling design. Canadian Journal of Fisheries and Aquatic Sciences, 72(3):434-446.Go to metadata icon

Little, A.S., C. L. Needle, R. Hilborn, D.S. Holland, and C.T. Marshall 2015. Real-time spatial management approaches to reduce bycatch and discards: experiences from Europe and the United States. Fish and Fisheries. 16(4):576-602. DOI: 10.1111/faf.12080

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Lopez, J., K. D. Hyrenbach, C. Littnan, G. M. Ylitalo. 2014. Exploration of geographic variation of persistent organic pollutants in Hawaiian monk seals (Monachus schauinslandi) in the main Hawaiian Islands. Endangered Species Research, 24(3):249-262.Go to metadata icon

Losee, J., J. A. Miller, W. T. Peterson, D. J. Teel, K. C. Jacobson. 2014. The next link will exit from NWFSC web site Influence of ocean ecosystem variation on trophic interactions and survival of juvenile coho and Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences, 71:1747-1757.Go to metadata icon

Losee, J., J. Fisher, D. J. Teel, R. Baldwin, D. Marcogliese, K. C. Jacobson. 2014. Growth of Juvenile Coho salmon (Oncorhynchus kisutch) Relates Positively to Species Richness of Trophically Transmitted Parasites. Journal of Fish Biology, 85:1665-1681.Go to metadata icon

Lynch, H., J. T. Thorson, A. O. Shelton. 2014. Dealing with under- and over-dispersed count data in life history, spatial, and community ecology. Ecology, 95(11):31733180. doi:http://dx.doi.org/10.1890/13-1912.1Go to metadata icon

Macneale, K.H., Spromberg, J.A., Baldwin, D.H., and Scholz, N.L. 2014. A modeled comparison of direct and food web-mediated impacts of common pesticides on Pacific salmon. Public Library of Science ONE, 9: e92436.Go to metadata icon

 Mager E.M., Esbaugh, A.J., Stieglitz, J.D., Hoenig, R., Bodinier, C., Incardona, J.P., Scholz, N.L., Benetti, D.D., and Grosell, M. 2014. Acute embryonic or juvenile exposure to Deepwater Horizon crude oil impairs the swimming performance of mahi mahi (Coryphaena hippurus). Environmental Science and Technology, 48:7053-7061.Go to metadata icon

Marcogliese, D., K. C. Jacobson. 2014. The next link will exit from NWFSC web site Parasites as biological tags of marine, freshwater and anadromous fishes in North America from the tropics to the Arctic. Parasitology, (Firstview)1-22.Go to metadata icon

Marshall, K. N., I. C. Kaplan, P. S. Levin. 2014. New target fisheries lead to spatially variable food web effects in an ecosystem model of the California Current. Ecological Modelling. doi:10.1016/j.ecolmodel.2014.07.003Go to metadata icon

McIntyre, J.K., Davis, J.W., Incardona, J.P., Stark, J.D., and Scholz, N.L. 2014. Zebrafish and clean water technology: assessing the protective effects of bioinfiltration as a treatment for toxic urban runoff. Science of the Total Environment, 500-501:173-180.Go to metadata icon

McKinney, G., A. Varian, J. Scardina, K. M. Nichols. 2014. Genetic and morphological divergence in three strains of brook trout commonly stocked in Lake Superior. PLOS ONE.Go to metadata icon

McMillan, J. R., M. McHenry, G. R. Pess, R. Moses, T. P. Quinn. 2014. The next link will exit from NWFSC web site Documentation of unusual fall spawning by coastal cutthroat trout in the Elwha River system, Washington. Transactions of the American Fisheries Society, 143(6):1605-1611.Go to metadata icon

Meador J.P.  2014.  Do chemically contaminated river estuaries in Puget Sound (Washington, USA) affect the survival rate of hatchery-reared Chinook salmon?  Canadian Journal of Fisheries and Aquatic Sciences 71(1) 162-180.Go to metadata icon

Meador, J. P., M. S. Warne, P. M. Chapman, K. M. Chan, S. Yu, K. M. Leung. 2014. Tissue-based environmental quality benchmarks and standards. Environmental Science and Pollution Research, 21(1):28-32.Go to metadata icon

Miller, J. A., D. J. Teel, W. T. Peterson, A. M. Baptista. 2014. The next link will exit from NWFSC web site Assessing the relative importance of local and regional processes on the survival of a threatened salmon population. PLOS ONE, 9(6):e99814.Go to metadata icon

Miller, T. W., K. L. Bosley, J. Shibata, R. D. Brodeur, K. Omori, R. L. Emmett. 2014. The next link will exit from NWFSC web site Use of mixing models for Humboldt squid diet analysis: reply to Field et al. (2014). Marine Ecology Progress Series, 500:287-290.Go to metadata icon

Moser, M. L., A. D. Jackson, M. C. Lucas, R. P. Mueller. 2014. The next link will exit from NWFSC web site Behavior and potential threats to survival of migrating lamprey ammocoetes and macrophthalmia. Reviews in Fish Biology and Fisheries, 25(1):103-116.Go to metadata icon

Neville, D. R., A. J. Phillips, R. D. Brodeur, K. A. Higley. 2014. The next link will exit from NWFSC web site Trace levels of Fukushima disaster radionuclides in East Pacific albacore. Environmental Science & Technology, 48(9):4739-4743.Go to metadata icon

Noren, S. R., D. P. Noren, J. K. Gaydos. 2014. Living in the Fast Lane: Rapid development of the locomotor muscle in immature harbor porpoises (Phocoena phocoena). Journal of Comparative Physiology, B, 184(8):1065-1076. doi:DOI 10.1007/s00360-014-0854-8Go to metadata icon

Nosrati, K., G. Govers, B. X. Semmens, E. J. Ward. 2014. A mixing model to include uncertainty in sediment fingerprinting. Geoderma.Go to metadata icon

O'Neill, S. M., G. M. Ylitalo, J. E. West. 2014. Energy Content of Pacific Salmon as Prey of Northern and Southern Resident Killer Whales. Endangered Species Research, 25:265-281.Go to metadata icon

Paquin, M. M., A. N. Kagley, K. L. Fresh, J. W. Orr. 2014. The next link will exit from NWFSC web site First records of night smelt, Spirinchus starski, in the Salish Sea, Washington. Northwestern Naturalist, 95(1):40-43.Go to metadata icon

 Patrick, WS, Cope J (2014) Examining the 10-Year Rebuilding Dilemma for US Fish Stocks. PloS ONE 9(11): e112232 doi: 10:1371/journal pone 0112232Go to metadata icon

Pess, G. R., T. P. Quinn, S. R. Gephard, R. Saunders. 2014. The next link will exit from NWFSC web site Re-colonization of Atlantic and Pacific rivers by anadromous fishes: linkages between life history and the benefits of barrier removal. Reviews in Fish Biology and Fisheries, Online first.Go to metadata icon

Peterson, W. T., J. L. Fisher, J. O. Peterson, C. A. Morgan, B. J. Burke, K. L. Fresh. 2014. The next link will exit from NWFSC web site Applied fisheries oceanography:  ecosystem indicators of ocean conditions inform fisheries management in the California Current. Oceanography, 27(4):80-89.Go to metadata icon

Phillips, A. J., L. Ciannelli, R. D. Brodeur, W. G. Pearcy, J. Childers. 2014. The next link will exit from NWFSC web site Spatio-temporal associations of albacore CPUE in the Northeastern Pacific with localized and climate environmental indices. ICES Journal of Marine Science.Go to metadata icon

Phillips, D. L., R. Inger, S. Bearhop, A. L. Jackson, J. W. Moore, A. C. Parnell, B. X. Semmens, E. J. Ward. 2014. Best practices for use of stable isotope mixing models in food web studies. Canadian Journal of Zoology, 92:823-835.Go to metadata icon

Plummer, M., P. S. Levin. 2014. Integrated Ecosystem Assessments and Ecosystem-based Management: A Socio-ecological Perspective. The Sea, 16.Go to metadata icon

Pollock, M. M., T. J. Beechie, J. M. Wheaton, C. E. Jordan, N. Bouwes, N. Weber, C. Volk. 2014. The next link will exit from NWFSC web site Using beaver dams to restore incised stream ecosystems. Bioscience, 64(4):279-290.Go to metadata icon

Pollock, M. M., T. J. Beechie. 2014. The next link will exit from NWFSC web site Does riparian forest restoration thinning enhance biodiversity? The ecological importance of large wood. Journal of the American Water Resources Association, 50(3):543-559.Go to metadata icon

Purcell, M. K., J. J. Hard, K. G. Neely, L. K. Park, J. R. Winton, D. G. Elliott. 2014. Genetic variation in bacterial kidney disease susceptibility in Lake Michigan Chinook salmon and its progenitor population from the Puget Sound. Journal of Aquatic Animal Health, 26(1):9-18. doi:10.1080/08997659.2013.860061Go to metadata icon

Rehr, A. P., G. D. Williams, N. Tolimieri, P. S. Levin. 2014. Impacts of terrestrial and shoreline stressors on eelgrass in Puget Sound: an expert elicitation. Coastal Management, 42:246-262.Go to metadata icon

Rehr, A. P., G. D. Williams, P. S. Levin. 2014. A test of the use of computer generated visualizations in support of ecosystem-based management. Marine Policy, 46:14-18.Go to metadata icon

Reum JCP, Alin SR, Feely RA, Newton J, Warner M, McElhany P. (2014) Seasonal Carbonate Chemistry Covariation with Temperature, Oxygen, and Salinity in a Fjord Estuary: Implications for the Design of Ocean Acidification Experiments. PLoS ONE 9(2): e89619. doi:10.1371/journal.pone.0089619Go to metadata icon

Rhode, J., K. L. Fresh, T. P. Quinn. 2014. The next link will exit from NWFSC web site Factors affecting partial migration in Puget Sound coho salmon. North American Journal of Fisheries Management, 34(3):559-570.Go to metadata icon

Robinson, K. L., J. J. Ruzicka, M. B. Decker, R. D. Brodeur, F. L. Hernandez, E. M. Acha, S. Uye, H. Mianzan, W. M. Graham. 2014. Jellyfish, forage fish and the world's major fisheries. Oceanography, 27(4).Go to metadata icon

Roegner, G. C., D. J. Teel. 2014. The next link will exit from NWFSC web site Density and condition of subyearling Chinook salmon in the lower Columbia River and estuary in relation to water temperature and genetic stock of origin. Transactions of the American Fisheries Society, 143(5):1161-1176.Go to metadata icon

Roni, P., T. J. Beechie, G. R. Pess, K. Hanson. 2014. The next link will exit from NWFSC web site Wood placement in river restoration:  fact, fiction, and future direction. Canadian Journal of Fisheries and Aquatic Sciences, 72(3):466-478.Go to metadata icon

Rust, M. B., K. H. Amos, A. L. Bagwill, W. W. Dickhoff, L. M. Juarez, C. Price, J. A. Morris Jr., M. C. Rubino. 2014. The next link will exit from NWFSC web site Environmental performance of marine net-pen aquaculture in the United States. Fisheries, 39(11):508-524.Go to metadata icon

Ryan, R.W., D.S. Holland and G.E. Herrera 2014. Ecosystem Externalities in Fisheries. In Press Marine Resource Economics 29(1):39-53Go to metadata icon

Safford, T. G., K. C. Norman, M. Henly, K. E. Mills, P. S. Levin. 2014. Environmental Awareness and Public Support for Protecting and Restoring Puget Sound. Environmental Management.Go to metadata icon

Sale, P. F., T. Agardy, C. H. Ainsworth, B. E. Feist, J. D. Bell, P. Christie, O. Hoegh-Guldberg, P. J. Mumby, D. A. Feary, M. I. Saunders, T. M. Daw, S. J. Foale, P. S. Levin, K. C. Lindeman, K. Lorenzen, R. S. Pomeroy, E. H. Allison, R. H. Bradbury, J. Corrin, A. J. Edwards, D. O. Obura, Y. J. Sadovy de Mitcheson, M. A. Samoilys, C. R. Sheppard. 2014. Transforming management of tropical coastal seas to cope with challenges of the 21st century. Marine Pollution Bulletin. doi:10.1016/j.marpolbul.2014.06.005Go to metadata icon

Sergeant, C. J., J. B. Armstrong, E. J. Ward. 2014. Predator-prey migration phenologies remain synchronized in a warming catchment. Freshwater Biology.Go to metadata icon

Shelton, A.O., J.F. Samhouri, A.C. Stier, and P.S. Levin. 2014. Assessing trade-offs to inform ecosystem-based fisheries management of forage fish. Scientific Reports 4:7110  DOI: 10.1038/srep07110Go to metadata icon

Shelton, A. O., J. T. Thorson, E. J. Ward, B. E. Feist. 2014. Spatial, semi-parametric models improve estimates of species abundance and distribution. Canadian Journal of Fisheries and Aquatic Sciences, 71(11):1655-1666. doi:10.1139/cjfas-2013-0508Go to metadata icon

Shelton, A.O., T.B. Francis, G.D. Williams, B. Feist, K. Stick, P.S. Levin. 2014. Habitat limitation and spatial variation in Pacific herring egg survival. Marine Ecology Progress Series 514:231–245.Go to metadata icon

Sloat, M. R., D. J. Fraser, J. B. Dunham, J. A. Falke, C. E. Jordan, J. R. McMillan, H. A. Ohms. 2014. The next link will exit from NWFSC web site Ecological and evolutionary patterns of freshwater maturation in Pacific and Atlantic salmonines. Reviews in Fish Biology and Fisheries, 24(3):689-707.Go to metadata icon

Smith, C. T., J. Baumsteiger, W. R. Ardren, Y. Defflaff, D. K. Hawkins, D. M. Van Doornik. 2014. Eliminating variation in age-at-spawning leads to genetic divergence within a single salmon population. Journal of Fish and Wildlife Management, 6:4-18. doi:http://dx.doi.org/10.3996/122013-JFWM-086Go to metadata icon

Stachura, M. M., T. E. Essington, N. Mantua, A. B. Hollowed, M. A. Haltuch, P. Spencer, T. A. Branch, M. J. Doyle. 2014. Linking recruitment synchrony to environmental variability. Fisheries Oceanography, 23(5):Pages 389457. doi:DOI: 10.1111/fog.12066Go to metadata icon

Stanton, T. K., D. Chu, J. M. Gelb, G. L. Tipple, K. Baik. 2014. Interpreting Echo Statistics of Three Distinct Clutter Classes Measured With a Midfrequency Active Sonar: Accounting for Number of Scatterers, Scattering Statistics, and Beampattern Effects. IEEE Journal of Oceanic Engineering, 99:1-9. doi:10.1109/JOE.2014.2346417Go to metadata icon

Stewart, I. J., O. S. Hamel. 2014. Bootstrapping of sample sizes for length- or age-composition data used in stock assessments. Canadian Journal of Fisheries and Aquatic Sciences, 71(4):581-588.Go to metadata icon

Stinton, A., L. Ciannelli, D.C. Reese, W.W. Wakefield. In press. Using in situ video analysis to assess juvenile flatfish behavior along the Oregon central coast. CalCOFI Rep. 55:158-168.Go to metadata icon

Tallis, H., P. S. Levin, J. F. Samhouri, &. 238 Co-authors. 2014. A call for inclusive conservation. Nature, 515:27-28.Go to metadata icon

Teel, D. J., D. L. Bottom, S. A. Hinton, D. R. Kuligowski, G. T. McCabe Jr., R. A. McNatt, G. C. Roegner, L. A. Stamatiou, C. A. Simenstad. 2014. The next link will exit from NWFSC web site Genetic identification of Chinook salmon in the Columbia River estuary: Stock-specific distributions of juveniles in shallow freshwater habitats. North American Journal of Fisheries Management, 34(3):621-641.Go to metadata icon

Thorson, J. T. 2014. Standardizing compositional data for stock assessment. ICES Journal of Marine Science, 71(5):1117-1128. doi:10.1093/icesjms/fst224Go to metadata icon

Thorson, J. T., E. J. Ward. 2014. Accounting for vessel effects when standardizing catch rates from cooperative surveys. Fisheries Research.Go to metadata icon

Thorson, J. T., I. G. Taylor, I. J. Stewart, A. E. Punt. 2014. Rigorous meta-analysis of life history correlations by simultaneously analyzing multiple population dynamics models. Ecological Applications, 24(2):215-326. doi:10.1890/12-1803.1Go to metadata icon

Thorson, J. T., I. G. Taylor. 2014. A comparison of parametric, semi-parametric, and non-parametric approaches to selectivity in age-structured assessment models. Fisheries Research, 158:7483. doi:10.1016/j.fishres.2013.10.002Go to metadata icon

Thorson, J. T., J. Cope, W. S. Patrick. 2014. Assessing the quality of life history information in publicly available databases. Ecological Applications.Go to metadata icon

Thorson, J. T., K. Ono, S. Munch. 2014. A Bayesian approach to identifying and compensating for model misspecification in population models Read More: http://www.esajournals.org/doi/abs/10.1890/13-0187.1. Ecology, 95:329-341.Go to metadata icon

Thorson, J. T., M. D. Scheuerell, B. X. Semmens, C. Pattengill-Semmens. 2014. Demographic modeling of citizen science data informs habitat preferences and population dynamics of recovering fishes. Ecology, 95(12):3251-3258.Go to metadata icon

Thorson, J. T., M. D. Scheuerell, E. Buhle, T. Copeland. 2014. The next link will exit from NWFSC web site Spatial variability buffers temporal fluctuations in early juvenile survival for an endangered Pacific salmon. Journal of Animal Ecology, 83(1):157-167.Go to metadata icon

Thorson, J. T., O. Jensen, E. Zipkin. 2014. How variable is recruitment for marine fishes? A hierarchical model for testing life history theory. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Trainer, V.L., Sullivan, K., Eberhart, B.T.L., Paternoster, J., Shuler, A., Hignutt Jr., E., Kiser, J., Eckert, G., Morton, S.L. The impacts of paralytic shellfish poisoning on the Alaska shellfish industry and the implementation of an early warning system. J. Shellfish Research.Go to metadata icon

Volk, C., Y. Lucero, K. Barnas. 2014. The next link will exit from NWFSC web site Why is data sharing in collaborative natural resource studies so hard and what can we do to improve it? Environmental Management, 53(5):883-893.Go to metadata icon

Waples, R.S.  2015.  Testing for Hardy-Weinberg proportions:  Have we lost the plot?  Journal of Heredity (invited Perspective) 106:1-19.Go to metadata icon

Waples, R. S., T. Antao, G. Luikart. 2014. The next link will exit from NWFSC web site Effects of overlapping generations on linkage disequilibrium estimates of effective population size. Genetics, 197(2):769-780.Go to metadata icon

Waples, R. S., T. Antao. 2014. The next link will exit from NWFSC web site Intermittent breeding and constraints on litter size:  consequences for effective population size per generation (Ne) and per reproductive cycle (Nb). Evolution, 68(6):1722-1734.Go to metadata icon

Ward, E. J., E. E. Holmes, J. T. Thorson. 2014. Complexity is costly: comparing parametric and non-parametric methods for short-term population forecasting. Oikos, 123(6):652-661.Go to metadata icon

Ward, E. J., K. N. Marshall, A. Sedgley, T. Ross, T. Hass, S. F. Pearson, G. Joyce, N. J. Hamel, P. J. Hodum, R. Faucett. 2014. Using citizen-science data to identify local hotspots of seabird occurrence. PeerJ.Go to metadata icon

Wargo Rub, A. M., N. Jepsen, T. L. Liedtke, M. L. Moser, E. P. Scott Weber III. 2014. The next link will exit from NWFSC web site Surgical insertion of transmitters and telemetry methods in fisheries research. American Journal of Veterinary Research, 75(4):402-416.Go to metadata icon

Warren, D. R., C. J. Harvey, M. M. McClure, B. L. Sanderson. 2014. Use of an ecosystem-based model to evaluate alternative conservation strategies for juvenile Chinook salmon in a headwater stream. North American Journal of Fisheries Management, 34:839-852. doi:10.1080/02755947.2014.910574Go to metadata icon

Weber, N., N. Bouwes, C. E. Jordan. 2014. Estimation of Salmonid Habitat Growth Potential Through Measurements of Invertebrate Food Abundance and Temperature. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Weitkamp, L. A., G. Goulette, J. Hawkes, M. O'Malley, C. Lipsky. 2014. The next link will exit from NWFSC web site Juvenile salmon in estuaries: comparisons between North American Atlantic and Pacific salmon populations. Reviews in Fish Biology and Fisheries, 24(3):713-736.Go to metadata icon

West, J. E., S. M. O'Neill, D. C. Doty, G. M. Ylitalo, M. Dutch, J. Incardona. 2014. An evaluation of background levels and sources of polycyclic aromatic hydrocarbons in naturally spawned eggs of Pacific herring (Clupea pallasi) from Puget Sound, Washington, USA. Science of the Total Environment, 499:114-124.Go to metadata icon

Williams, J. G., S. G. Smith, J. K. Fryer, M. D. Scheurell, W. D. Muir, T. A. Flagg, R. W. Zabel, J. W. Ferguson, E. Casillas. 2014. The next link will exit from NWFSC web site Influence of ocean and freshwater conditions on Columbia River sockeye salmon Oncorhynchus nerka adult return rates. Fisheries Oceanography, 23(3):210-224.Go to metadata icon

Zipkin, E., J. T. Thorson, K. E. See, H. Lynch, E. Grant, Y. Kanno, R. Chandler, B. H. Letcher, J. A. Royle. 2014. Modeling structured population dynamics using data from unmarked individuals. Ecology, 95(1):2229. doi:http://dx.doi.org/10.1890/13-1131.1Go to metadata icon

2014. The next link will exit from NWFSC web site Rearing in natural and recovering tidal wetlands enhances growth and life-history diversity of Columbia Estuary tributary coho salmon Oncorhynchus kisutch population. Journal of Fish Biology, 85(sp1):31-51.Go to metadata icon