Northwest Fisheries Science Center

Publications: Journal Article

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2016

Ackerman, MW, BK Hand, RK Waples, G Luikart, RS Waples, C Steele, BA Garner, J McCane, and M Campbell.  2016.  Effective number of breeders from sibship reconstruction: empirical evaluations using hatchery steelhead.  Evolutionary Applications (published online early 17 October 2016 DOI: 10.1111/eva.12433.).Go to metadata icon

Adams, J., I. C. Kaplan, B. Chasco, K. N. Marshall, A. Acevedo-Gutierrez, E. J. Ward. 2016. A century of Chinook salmon consumption by marine mammal predators in the Northeast Pacific Ocean. Ecological Indicators.Go to metadata icon

Adams, N. G., A. Robertson, L. M. Grattan, S. Pendleton, S. Roberts, J. K. Tracy and V. L. Trainer (2016). "Assessment of sodium channel mutations in Makah tribal members of the U.S. Pacific Northwest as a potential mechanism of resistance to paralytic shellfish poisoning." Harmful Algae 57, Part B: 26-34.Go to metadata icon

Armstrong, J. B., E. J. Ward, D. E. Schindler, P. J. Lisi. 2016. Adaptive capacity at the northern front: sockeye salmon behaviorally thermoregulate during novel exposure to warm temperatures. Conservation Physiology.Go to metadata icon

Audzijonyte, A, Fulton, E, Haddon, M, Helidoniotis F, Hobday AJ, Kuparinen A, Morrongiello J, Smith ADM, Upston J, and Waples, RS. 2016.  Trends and management implications of human-induced life-history changes in marine ectotherms:.  Fish and Fisheries 17:1005-1028.Go to metadata icon

Baliarsingh, S. K., A. A. Lotliker, M. L. Wells, V. L. Trainer, C. Parida, B. K. Sahu, S. Srnichandan, S. Sahoo. 2016. Environmental dynamics of a red Noctiluca scintillans bloom in tropical coastal waters. Sahu, K. C., S. Kumar. Marine Pollution Bulletin.Go to metadata icon

Beckman, B. R., D. L. Harstad, D. K. Spangenberg, D. K. Spangenberg, R. S. Gerstenberger, C. Brun, D. A. Larsen. 2016. The impact of different hatchery rearing environments on smolt to adult survival of spring Chinook Salmon. Transactions of the American Fisheries Society.Go to metadata icon

Beckmen, K. B., M. J. Keogh, K. A. Burek-Huntington, G. M. Ylitalo, B. S. Fadely, K. W. Pitcher. 2016. Organochlorine contaminant concentrations in multiple tissues of free-ranging Steller sea lions (Eumetopias jubatus) in Alaska. Science of the Total Environment, 542:441-452.Go to metadata icon

Bednarsek, N., C. J. Harvey, I. C. Kaplan, R. A. Feely, J. Mozina. 2016. Pteropods on the edge: convergence of warming, deoxygenation and acidification impacts from a modeling perspective. Progress in Oceanography, 145:1-24.Go to metadata icon

Bennett, S., G. R. Pess, N. Bouwes, P. Roni, R. E. Bilby, S. Gallagher, J. Ruzycki, T. W. Buehrens, W. Ehinger, J. H. Anderson, C. E. Jordan, B. Bowersox, C. M. Greene. 2016. The next link will exit from NWFSC web site Progress and challenges of testing the effectiveness of stream restoration in the Pacific Northwest using intensively monitored watersheds. Fisheries, 41(2):93-103.Go to metadata icon

Berejikian, B.A., Hard, J.J., Tatara, C.P., Van Doornik, D.M., Swanson, P., and Larsen, D.A. Rearing strategies alter patterns of size-selective mortality and heritable size variation in steelhead trout (Oncorhynchus mykiss). Canadian Journal of Fisheries and Aquatic Sciences. 74: 273-283 dx.doi.org/10.1139/cjfas-2016-0715Go to metadata icon

Berejikian, B. A., M. E. Moore, S. J. Jeffries. 2016. Predator-prey interactions between harbor seals and migrating steelhead smolts revealed by acoustic telemetry. Marine Ecology Progress Series, 543:21-35. doi:10.3354/meps11579Go to metadata icon

Bett, N. N., S. Hinch, S. Yun, A. H. Dittman. 2016. Evidence of Olfactory Imprinting at an Early Life Stage in Pink Salmon (Oncorhynchus gorbuscha). Scientific Reports. doi:10.1038/srep36393Go to metadata icon

Bill, B. D., S. K. Moore, L. R. Hay, D. M. Anderson, V. L. Trainer. 2016. Effects of temperature and salinity on growth of Alexandrium isolates from the Salish Sea. Journal of Phycology, 52(2):230-238. doi:10.1111/jpy.12386Go to metadata icon

Bizzarro, J.J., M.M. Yoklavich, and W.W. Wakefield. 2016. Diet composition and foraging ecology of U.S. Pacific Coast groundfishes with applications for fisheries management. Environ. Biol. Fish. doi:10.1007/s10641-016-0529-2Go to metadata icon

Bond, M. H., P. A. Westley, A. H. Dittman, D. E. Holecek, T. M. Marsh, T. P. Quinn. 2016. Combined Effects of Barge Transportation, River Environment, and Rearing Location on Straying and Migration of Adult Snake River Fall-Run Chinook Salmon. Transactions of the American Fisheries Society, 146(1):60-73.Go to metadata icon

Booth, D. B., J. G. Scholz, T. J. Beechie, S. C. Ralph. 2016. The next link will exit from NWFSC web site Integrating limiting-factors analysis with process-based restoration to improve recovery of endangered salmonids in the Pacific Northwest, USA. Water, 8(5):174.Go to metadata icon

Bouwes, N., N. Weber, C. E. Jordan, M. M. Pollock, W. C. Saunders, I. A. Tattam, C. Volk, J. M. Wheaton. 2016. Ecosystem experiment reveals benefits of beaver assisted restoration to a population of E.S.A. listed steelhead (Oncorhynchus mykiss). Scientific Reports.Go to metadata icon

Boyd C, DeMaster DP, Waples RS, Ward EJ, Taylor BL.  2017.  Consistent extinction risk assessment for marine species under the U.S. Endangered Species Act.  Conservation Letters 10:328-336.Go to metadata icon

Brodeur, R. D., J. S. Link, B. E. Smith, M. Ford, D. Kobayashi, T. T. Jones. 2016. The next link will exit from NWFSC web site Ecological and economic consequences of ignoring jellyfish:  a plea for increased monitoring of ecosystems. Fisheries, 41(11):630-637.Go to metadata icon

Brynildsrud, O., S. Gulla, E. J. Feil, S. F. Nørstebø, L. D. Rhodes. 2016. Identifying copy number variation of the dominant virulence factor msa within genomes of the fish pathogen Renibacterium salmoninarum. Microbial Genomics, MGen 2016 2. doi:10.1099/mgen.0.000055Go to metadata icon

Burke, B. J., J. J. Anderson, J. A. Miller, L. M. Tomaro, D. J. Teel, N. S. Banas, A. M. Baptista. 2016. The next link will exit from NWFSC web site Estimating behavior in a black box:  how coastal oceanographic dynamics influence yearling Chinook salmon marine growth and migration behaviors. Environmental Biology of Fishes, 99(8):671-686.Go to metadata icon

Busch, D. S., P. McElhany. 2016. Estimates of the Direct Effect of Seawater pH on the Survival Rate of Species Groups in the California Current Ecosystem. PLOS ONE, 11(8):e0160669. doi:doi:10.1371/journal.pone.0160669Go to metadata icon

Busch, D. S., R. Griffis, J. S. Link, K. Abrams, J. Baker, R. E. Brainard, M. Ford, J. A. Hare, A. Himes-Cornell, A. Hollowed, N. Mantua, S. McClatchie, M. M. McClure, M. W. Nelson, K. Osgood, M. B. Rust, V. Saba, M. Sigler, S. Sykora-Bodie, C. L. Toole, E. Thunberg, R. S. Waples, R. Merrick. 2016.  Climate Science Strategy of the US National Marine Fisheries Service. Marine Policy 74:58-67.Go to metadata icon

Bærum, K. M., L. A. Vøllestad, P. M. Kiffney, A. Remy, T. O. Haugen. 2016. The next link will exit from NWFSC web site Population-level variation in juvenile brown trout growth from different climatic regions to an experimental thermal gradient. Environmental Biology of Fishes, 99(12):1009-1018.Go to metadata icon

S. Calhoun, et al., Acknowledging the voice of women: implications for fisheries management and policy, Mar. Policy (2016)Go to metadata icon

Chu, D., P. H. Wiebe, G. L. Lawson. 2016. Estimation of biological parameters of marine organisms using linear and non-linear acoustic scattering model-based inversion methods. Journal of the Acoustical Society of America.Go to metadata icon

Conner, M. M., W. C. Saunders, N. Bouwes, C. E. Jordan. 2016. Evaluating impacts using a BACI design, ratios, and a Bayesian approach with a focus on restoration. Environmental Monitoring and Assessment.Go to metadata icon

Coscia I, Chopelet J, Waples RS, Mann B, and Mariani S. 2016.  Sex change and effective population size: implications for population genetic studies in marine fish.  Heredity (advance online publication, 10 August 2016; doi:10.1038/hdy.2016.50)Go to metadata icon

Dale, K. E., E. A. Daly, R. D. Brodeur. 2016. The next link will exit from NWFSC web site Interannual variability in the feeding and condition of subyearling Chinook salmon off Oregon and Washington. Fisheries Oceanography, 26(1):1-16.Go to metadata icon

Demetras, N. J., D. D. Huff, C. J. Michel, J. M. Smith, G. R. Cutter, S. A. Hayes, and S. T. Lindley. 2016. Development of underwater recorders to quantify predation of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a river environment. Fishery Bulletin 114:179-185.
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Dietrich, J. P., K. Eder, D. E. Thompson, R. A. Buchanan, J. R. Skalski, G. A. McMichael, D. S. Fryer, F. J. Loge. 2016. Survival and travel times of in-river and transported yearling Chinook salmon in the lower Columbia River and estuary. Fisheries Research, 183:435-446.Go to metadata icon

Du Preez, C., J. Curtis, M. E. Clarke. 2016. The next link will exit from NWFSC web site The structure and distribution of benthic communities on a shallow seamount (Cobb Seamount, Northeast Pacific Ocean). PLoS ONE. doi:http://dx.doi.org/10.1371/journal.pone.0165513Go to metadata icon

Du, X., W. T. Peterson, J. L. Fisher, M. Hunter, J. O. Peterson. 2016. The next link will exit from NWFSC web site Initiation and development of a toxic and persistent Pseudo-nitzschia bloom off the Oregon coast in spring/summer 2015. PLoS ONE, 11(10):e0163977.Go to metadata icon

East, A., K. Jenkins, P. J. Happe, J. Bountry, T. J. Beechie, T. Randle. 2016. The next link will exit from NWFSC web site Channel-planform evolution in four rivers of Olympic National Park, Washington, USA: The roles of hydrology, sediment supply, and trophic cascades. Earth Surface Processes and Landforms, Early view.Go to metadata icon

Esbaugh, A.J., Mager, E.M., Stieglitz, J.D., Hoenig, R., Brown, T.S., French, B.L., Linbo, T.L., Scholz, N.L., Incardona, J.P., Benetti, D.D., and Grosell, M. 2016. The effects of weathering and chemical dispersion on Deepwater Horizon crude oil toxicity to mahi mahi (Coryphaena hippurus) early life stages. Science of the Total Environment, 543:644-651.Go to metadata icon

Everett, M. V., L. K. Park, E. A. Berntson, A. Elz, C. Whitmire, A. A. Keller, M. E. Clarke. 2016. Large-scale genotyping-by-sequencing indicates high levels of gene flow in the deep-sea octocoral Swiftia simplex (Nutting 1909) on the west coast of the United States. PLoS ONE.Go to metadata icon

Fairgrieve, M. R., Y. Shibata, E. K. Smith, E. S. Hayman, J. A. Luckenbach. 2016. Molecular characterization of the gonadal kisspeptin system: cloning, tissue distribution, gene expression analysis and localization in sablefish (Anoplopoma fimbria). General and Comparative Endocrinology, 225:212-223. doi:http://dx.doi.org/10.1016/j.ygcen.2015.07.015Go to metadata icon

Feist, B. E., P. S. Levin. 2016. Novel indicators of anthropogenic influence on marine and coastal ecosystems. Frontiers in Marine Science, 3(113). doi:10.3389/fmars.2016.00113Go to metadata icon

Ferriss, B. E., J. C. Reum, P. S. McDonald, D. Farrell, C. J. Harvey. 2016. Evaluating trophic and non-trophic effects of shellfish aquaculture in a coastal estuarine food web. ICES Journal of Marine Science, 73:429-440.Go to metadata icon

Ford, M. J., A. R. Murdoch, M. P. Hughes, T. R. Seamons, E. LaHood. 2016. Broodstock history strongly influences natural spawning success in hatchery steelhead (Oncorhynchus mykiss). PLoS ONE.Go to metadata icon

Ford, M. J., J. Hempelmann, M. B. Hanson, K. L. Ayres, R. W. Baird, C. K. Emmons, J. I. Lundin, G. S. Schoor, S. K. Wasser, L. K. Park. 2016. The next link will exit from NWFSC web site Estimation of a killer whale (Orcinus orca) populations diet using sequencing analysis of DNA from feces. PLoS ONE, 11(1):e0144956.Go to metadata icon

Foss-Grant, A., E. Zipkin, J. T. Thorson, O. Jensen, W. Fagan. 2016. Hierarchical analysis of phylogenetic variation in intraspecific competition across fish species. Ecology, 97(7):17241734. doi:10.1890/15-0733.1Go to metadata icon

Fullerton, A. H., S. Anzalone, P. Moran, D. M. Van Doornik, T. Copeland, R. W. Zabel. 2016. The next link will exit from NWFSC web site Setting spatial conservation priorities despite incomplete data for characterizing metapopulations. Ecological Applications, 26(8):2560-2580.Go to metadata icon

Gayeski, N., G. R. Pess, T. J. Beechie. 2016. The next link will exit from NWFSC web site A life-table model estimation of the parr capacity of a late 19th century Puget Sound steelhead population. FACETS, 1:83-104.Go to metadata icon

Gerrodette, T., E. J. Ward, R. L. Taylor, L. Schwarz, T. Eguchi, P. R. Wade. 2016. Daniel Goodman's Empirical Approach to Bayesian Statistics. PeerJ.Go to metadata icon

Goertler, P. A., M. D. Scheuerell, C. A. Simenstad, D. L. Bottom. 2016. The next link will exit from NWFSC web site Estimating common growth patterns in juvenile Chinook salmon (Oncorhynchus tshawytscha) from diverse genetic stocks and a large spatial extent. PLoS ONE, 11(10):e0162121.Go to metadata icon

Grattan, L. M., C. Boushey, K. Tracy, V. L. Trainer, S. M. Roberts, N. Schluterman, J. G. Morris Jr. 2016. The association between razor clam consumption and memory in the CoASTAL cohort. Harmful Algae.Go to metadata icon

Grieshaber, C. A., S. R. Midway, F. S. Scharf, H. Koopman, J. A. Luckenbach, M. A. Middleton. 2016. Seasonal physiological dynamics of maturing female southern flounder (Paralichthys lethostigma). Conservation Physiology, 4(1):cow043. doi:doi:10.1093/conphys/cow043Go to metadata icon

Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. 2016. RNA-seq reveals differential gene expression in the brains of juvenile resident and migratory smolt rainbow trout (Oncorhynchus mykiss). Comparative Biochemistry and Physiology Part D: Genomics, 20:136-150. doi:http://dx.doi.org/10.1016/j.cbd.2016.07.006Go to metadata icon

Hall, J. E., P. Roni, T. R. Bennett, J. R. McMillan, K. Hanson, G. R. Pess, R. E. Moses, M. McHenry, W. Ehinger. 2016. The next link will exit from NWFSC web site Life history diversity of steelhead in two coastal Washington watersheds. Transactions of the American Fisheries Society, 145(5):990-1005.Go to metadata icon

Harley, J., T. Balmer, F. M. Farin, T. Kavanaugh, K. Dunlap, K. K. Knott, G. M. Ylitalo, T. M. O'Hara. 2016. Using domestic and free ranging Arctic canid models for environmental molecular toxicology research. Environmental Science & Technology.Go to metadata icon

Harvey, C. J., J. C. Reum, M. R. Poe, G. D. Williams, S. J. Kim. 2016. Using conceptual models and qualitative network models to advance integrative assessments of marine ecosystems. Coastal Management, 44:486-503. doi:10.1080/08920753.2016.1208881Go to metadata icon

Hassrick, J. L., M. J. Henderson, D. D. Huff, W. J. Sydeman, M. C. Sabal, J. A. Harding, A. J. Ammann, E. D. Crandall, E. P. Bjorkstedt, J. C. Garza, S. A. Hayes. 2016. The next link will exit from NWFSC web site Early ocean distribution of juvenile Chinook salmon in an upwelling ecosystem. Fisheries Oceanography, 25(2):133-146.Go to metadata icon

Hayes, S. A., A. Ammann, J. A. Harding, J. L. Hassrick, L. deWitt, C. A. Morgan. 2016. Observations of Steelhead in the California Current Lead to a Marine-Based Hypothesis for the Half-Pounder Life History, with Climate Change Implications for Anadromy. North Pacific Anadromous Fish Commission Bulletin, 6:97-105. doi:10.23849/npafcb6/97.105Go to metadata icon

Head, M. A., G. L. Stokes, J. T. Thorson, A. A. Keller. 2016. Techniques for improving estimates of maturity ogives in groundfish using double-reads and measurement error models. Fisheries Research.Go to metadata icon

Hicks, C., A. Levine, A. Agrawal, X. Basurto, S. J. Breslow, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. 2016. Engage key social concepts for sustainability. Science, 352:38-40.Go to metadata icon

Hodgson, E., T. E. Essington, I. C. Kaplan. 2016. Extending semi-quantitative ecological risk assessment to include life stage considerations. PLoS ONE, 11(7). doi:doi:10.1371/journal.pone.0158917Go to metadata icon

Holland, D.S. 2016. Development of the Pacific Groundfish Trawl IFQ Market. Marine Resource Economics. Marine Resource Economics 31(4):453-464. DOI: 10.1086/687829Go to metadata icon

Holland, D.S. and S. Kasperki. The Impact of Access Restrictions on Fishery Income Diversification of US West Coast Fishermen. Submitted to Coastal Management.Go to metadata icon

Holt, M. M., D. P. Noren, R. C. Dunkin, T. M. Williams. 2016. Comparing the metabolic costs of different sound types in bottlenose dolphins. Proceedings of Meetings on Acoustics.Go to metadata icon

Honea, J. M., M. M. McClure, J. C. Jorgensen, M. Scheuerell. 2016. Assessing freshwater life stage vulnerability and population-level responses of Chinook salmon to climate change. Climate Research.Go to metadata icon

Hubler, S., D. D. Huff, P. Edwards, and Y. Pan. 2016. The Biological Sediment Tolerance Index: Assessing fine sediments conditions in Oregon streams using macroinvertebrates. Ecological Indicators 67:132-145.Go to metadata icon

Ikeda, C. E., W. P. Cochlan, C. M. Bronicheski, V. L. Trainer, C. G. Trick. 2016. THE EFFECTS OF SALINITY ON THE CELLULAR PERMEABILITY AND ICHTHYOTOXICITY OF HETEROSIGMA AKASHIWO. Journal of Phycology.Go to metadata icon

Inaba, N., V. L. Trainer, Y. Onishi, K. Ishii, S. Wyllie-Echeverria. 2016. Spatial distribution of algicidal and growth-inhibiting bacteria associated with seagrass and macroalgae beds in Puget Sound. Harmful Algae.Go to metadata icon

Incardona, J.P. and Scholz, N.L. 2016. The influence of heart developmental anatomy on cardiotoxicity-based adverse outcome pathways in fish. Aquatic Toxicology, 177:515-525.Go to metadata icon

Johnson, K. F., E. Councill, J. T. Thorson, E. Brooks, R. D. Methot, A. E. Punt. 2016. Can autocorrelated recruitment be estimated using integrated assessment models, and how does it affect population forecasts? Fisheries Research, 183:222232. doi:10.1016/j.fishres.2016.06.004Go to metadata icon

Jorgensen, J. C., E. J. Ward, M. D. Scheuerell, R. W. Zabel. 2016. The next link will exit from NWFSC web site Assessing spatial covariance among time series of abundance. Ecology and Evolution, 6(8):2472-2485.Go to metadata icon

Kaplan, I. C., G. D. Williams, N. A. Bond, A. J. Hermann, S. A. Siedlecki. 2016. Cloudy with a chance of sardines: forecasting sardine distributions using regional climate models. Fisheries Oceanography, 25(1):15  27.Go to metadata icon

Kaplan, I. C., K. N. Marshall. 2016. A guinea pig's tale: learning to review end-to-end marine ecosystem models for management applications. ICES Journal of Marine Science, 73(7):1715-1724. doi:doi:10.1093/icesjms/fsw047Go to metadata icon

Kasprak, A., N. Hough-Snee, T. J. Beechie, N. Bouwes, G. Brierley, R. Camp, K. Fryirs, H. Imaki, M. L. Jensen, G. O. O'Brien, J. M. Wheaton. 2016. The next link will exit from NWFSC web site The blurred line between form and process: a comparison of stream channel classification frameworks. PLoS ONE, 11(3):1-31.Go to metadata icon

Keller, A., J. C. Buchanan, E. Steiner, D. Draper, A. Chappell, P. H. Frey, M. A. Head. 2016. Size at maturity for grooved Tanner crab (Chionoecetes tanneri) along the U.S. west coast (Washington to California). Fisheries Oceanography, 25(3):292-305. doi:doi:10.1111/fog.12155Go to metadata icon

Kelly, R. P., J. L. O'Donnell, N. Lowell, A. O. Shelton, J. F. Samhouri, S. Hennessey, B. E. Feist, G. Williams. 2016. Genetic signatures of ecological diversity along an urbanization gradient. PeerJ, 4:e2444. doi:10.7717/peerj.2444Go to metadata icon

Knaack, J. S., K. A. Porter, J. T. Jacob, K. Sullivan, M. Forester, R. Wang, V. L. Trainer, S. Morton, G. Eckert, E. McGahee, J. Thomas, J. McLaughlin, R. C. Johnson. 2016. Case diagnosis and characterization of suspected paralytic shellfish poisoning in Alaska. Harmful Algae.Go to metadata icon

Koehn, L. E., J. J. Hard, E. P. Akst, P. D. Boersma. 2016. Natural selection on morphology varies among years and by sex in Magellanic penguins (Spheniscus magellanicus). The Auk: Ornithological Advances, 133:783-805. doi:10.1642/AUK-16-50.1Go to metadata icon

Koehn, L. E., T. E. Essington, K. Marshall, I. C. Kaplan, W. J. Sydeman, A. Szoboslai, J. Thayer. 2016. Developing A High Taxonomic Resolution Food Web Model of the California Current Ecosystem To Assess the Trophic Position of Forage Fish and their Predators. Ecological Modelling, 335:87-100.Go to metadata icon

Kuparinen A, Hutchings J, and Waples RS.  2016.  Harvest-induced evolution and effective population size.  Evolutionary Applications 9:658-672.Go to metadata icon

Lee, J. S., M. A. Cook, B. A. Berejikian, F. W. Goetz. 2016. Temporal Changes in the Suitability of Claywater as a Greenwater Substitute for Rearing Larval Sablefish (Anoplopoma fimbria). Aquaculture, 470:11-16.Go to metadata icon

Lee, J. S., R. S. Poretsky, M. A. Cook, J. J. Reyes-Tomassini, B. A. Berejikian, F. W. Goetz. 2016. DMSP increases survival of larval sablefish (Anoplopoma fimbria). Journal of Chemical Ecology, 42(6):533-536. doi:10.1007/s10886-016-0713-zGo to metadata icon

Lefebvre, K. A., L. Quakenbush, E. R. Frame, K. Burek Huntington, G. Sheffield, R. Stimmelmayr, A. Bryan, P. Kendrick, H. Ziel, T. Goldstein. 2016. The next link will exit from NWFSC web site Prevalence of algal toxins in Alaskan marine mammals foraging in a changing arctic and subarctic environment. Harmful Algae, 55(2016):13-24.Go to metadata icon

Levin, P. S., L. E. Anderson. 2016. When good fences make bad neighbors: overcoming disciplinary barriers to improve natural resource management. Coastal Management.Go to metadata icon

Levin, P. S., S. J. Breslow, C. J. Harvey, K. C. Norman, M. R. Poe, G. D. Williams, M. Plummer. 2016. Conceptualization of Social-Ecological Systems of the California Current: an examination of interdisciplinary science supporting Ecosystem-based Management. Coastal Management, 44:397-408.Go to metadata icon

Levin, P. S., T. B. Francis, N. G. Taylor. 2016. Thirty-two essential questions for understanding the social-ecological system of forage fish: the case of Pacific Herring. Ecosystem Health & Sustainability, 2(4). doi:10.1002/ehs2.1213Go to metadata icon

Lin, J., J. J. Hard, K. Naish, D. Peterson, R. Hilborn, and L. Hauser. 2016. It's a bear market: evolutionary and ecological effects of predation on two wild sockeye salmon populations. Heredity 116:447-457 (doi:10.1038/hdy.2016.3; published online 10 February 2016).Go to metadata icon

Litz, M. N., J. A. Miller, L. A. Copeman, D. J. Teel, L. A. Weitkamp, E. A. Daly, and A. M. Claiborne.  2016 Ontogenetic shifts in the diets of juvenile Chinook salmon: new insight from stable isotopes and fatty acids.  Environmental Biology of Fishes. DOI 10.1007/s10641-016-0542-5.Go to metadata icon

Litzow, M. A., M. E. Hunsicker. 2016. The next link will exit from NWFSC web site Early warning signals, nonlinearity, and signs of hysteresis in real ecosystems. Ecosphere, 7(12):e01614.Go to metadata icon

Lomeli, M.J.M, and W.W. Wakefield. 2016. Evaluation of a sorting grid bycatch reduction device for the selective flatfish bottom trawl in the U.S. West Coast fishery. Fisheries Research 183:294–303Go to metadata icon

Luckenbach, J. A., W. T. Fairgrieve. 2016. Gonadal sex differentiation and effects of dietary methyltestosterone treatment in sablefish (Anoplopoma fimbria). Fish Physiology and Biochemistry, 42:233-248. doi:10.1007/s10695-015-0132-zGo to metadata icon

Lundin, J. I., G. M. Ylitalo, R. K. Booth, B. F. Anulacion, J. Hempelmann, K. M. Parsons, D. A. Giles, E. A. Seely, M. B. Hanson, C. K. Emmons, S. K. Wasser. 2016. Modulation in Persistent Organic Pollutant level and profile by prey availability and reproductive status in Southern Resident killer whale scat samples. Environmental Science & Technology, 50:6506-6516.Go to metadata icon

Lundin, J. I., R. Dills, G. M. Ylitalo, M. B. Hanson, C. K. Emmons, G. S. Schorr, J. Ahmad, J. Hempelmann, K. M. Parsons, S. K. Wasser. 2016. Persistent organic pollutant determination in killer whale scat samples: optimization of a gas chromatography/mass spectrometry method and application to field samples. Archives of Environmental Contamination and Toxicology, 70:9-19.Go to metadata icon

McCabe, R. M., B. M. Hickey, R. Kudela, K. A. Lefebvre, N. G. Adams, B. D. Bill, F. M. Gulland, R. E. Thomson, W. P. Cochlan, V. L. Trainer. 2016. The next link will exit from NWFSC web site An unprecedented coastwide toxic algal bloom linked to anomalous ocean conditions. Geophysical Research Letters, 43(19):10,366-10,376.Go to metadata icon

McCreless, E. E., D. D. Huff, D. A. Croll, B. R. Tershy, D. R. Spatz, N. D. Holmes, S. H. M. Butchart, and C. Wilcox. 2016. Past and estimated future impact of invasive alien mammals on insular threatened vertebrate populations. Nature Communications 7:12488.(The next link will exit from NWFSC web siteFull text | The next link will exit from NWFSC web sitepdf)Go to metadata icon

The next link will exit from NWFSC web site McElhany, P. CO2 sensitivity experiments are not sufficient to show an effect of ocean acidification. 2016. ICES Journal of Marine Science, doi:10.1093/icesjms/fsw085.Go to metadata icon

McIntyre, J.K., Anulacion, B.F., Davis, J.W., Edmunds, R.C., Incardona, J.P., Stark, J.D., and Scholz, N.L. 2016. Severe coal tar sealcoat runoff toxicity to fish is reversed by bioretention filtration. Environmental Science and Technology, 50:1570-1578.Go to metadata icon

McIntyre, J.K., Edmunds, R.C., Mudrock, E., Brown, M., Davis, J.W., Stark, J.D., Incardona, J.P. and Scholz, N.L. 2016. Confirmation of stormwater bioretention treatment effectiveness using molecular indicators of cardiovascular toxicity in developing fish. Environmental Science and Technology, 50:1561-1569.Go to metadata icon

McLaskey, A. K., J. E. Keister, P. McElhany, M. B. Olson, D. S. Busch, M. Maher, A. K. Winans. 2016. Impaired development of krill larvae (Euphausia pacifica) reared at pCO2 levels currently observed in the Northeast Pacific. Marine Ecology Progress Series.Go to metadata icon

McNatt, R. A., D. L. Bottom, S. A. Hinton. 2016. The next link will exit from NWFSC web site Residency and movement of juvenile Chinook salmon at multiple spatial scales in a tidal marsh of the Columbia River estuary. Transactions of the American Fisheries Society, 145(4):774-785.Go to metadata icon

Meador, J. P., A. Yeh, G. Young, E. P. Gallagher. 2016. Contaminants of emerging concern in a large temperate estuary. Environmental Pollution. doi:http://dx.doi.org/10.1016/j.envpol.2016.01.088Go to metadata icon

Moriarty, P. E., T. E. Essington, E. J. Ward. 2016. A Novel Method to Estimate Prey Contributions to Predator Diets. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Morley, S. A., H. J. Coe, L. S. Dunphy, J. J. Duda, M. L. McHenry, B. R. Beckman, M. Elofson, S. Sampson, L. Ward. 2016. The next link will exit from NWFSC web site Seasonal variation exceeds effects of salmon carcass additions on benthic foodwebs in the Elwha River. Ecosphere, 7(8):e01422.Go to metadata icon

Naman, S. M., C. M. Greene, C. A. Rice, J. W. Chamberlin, L. Conway-Cranos, J. R. Cordell, J. E. Hall, L. D. Rhodes. 2016. The next link will exit from NWFSC web site Stable isotope-based trophic structure of pelagic fish and jellyfish across natural and anthropogenic landscape gradients in a fjord estuary. Ecology and Evolution, 6(22):8159-8173.Go to metadata icon

Nichols, K. M., C. C. Kozfkay, S. R. Narum. 2016. Genomic signatures among Oncorhynchus nerka ecotypes to inform conservation and management of endangered populations. Evolutionary Applications, 9:1285-1300. doi:10.1111/eva.12412Go to metadata icon

Nicklason, P., H. Xu, R. Johnson, F. Sommers, L. Armbruster. 2016. Effects of Sustainable Diets from Fish Trim Waste on Growth Performance of Juvenile Sablefish (Anopoploma fimbria). The Israeli Journal of Aquaculture Bamidgeh, 68:1-11. doi:IJA.1296.2016Go to metadata icon

Nilsson, W. B., J. W. Turner. 2016. The thermostable direct hemolysin-related hemolysin (trh) gene for Vibrio parahaemolyticus: Sequence variation and implications for detection and function. Journal of Microbiological Methods, 126:1-7. doi:10.1016/j.mimet.2016.04.007Go to metadata icon

Noren, D. P., D. Hauser. 2016. Surface-based observations can assess activity budgets and fine-scale habitat use by an endangered whale population. Aquatic Mammals, 42(2):168-183. doi:DOI 10.1578/AM.42.2.2016.168Go to metadata icon

Norman, K. C., T. G. Safford, B. E. Feist, M. Henly. 2016. At the confluence of data streams: mapping the social and biophysical landscapes on the Puget Sound's edge. Coastal Management.Go to metadata icon

Ohlberger, J., M. D. Scheuerell, D. E. Schindler. 2016. The next link will exit from NWFSC web site Population coherence and environmental impacts across spatial scales: a case study of Chinook salmon. Ecosphere, 7(4):e01333.Go to metadata icon

Otto, S., S. Simons, J. Stoll, P. W. Lawson. 2016. The next link will exit from NWFSC web site Making progress on bycatch avoidance in the ocean salmon fishery using a transdisciplinary approach. ICES Journal of Marine Science, 73(9):2380-2394.Go to metadata icon

Parker-Stetter, S, S Urmy, J Horne, L Eisner & E Farley. 2016. Factors affecting summer distributions of Bering Sea forage fish species: assessing competing hypotheses. Deep Sea Research II, 134: 255-269.Go to metadata icon

Pfeiffer, L., T. Gratz. 2016. The effect of rights-based fisheries management on risk-taking and fishing safety. Proceedings of the National Academy of Sciences. doi:doi: 10.1073/pnas.1509456113Go to metadata icon

Plummer, M., B. E. Feist. 2016. Capturing energy from the motion of the ocean in a crowded sea. Coastal Management. doi:10.1080/08920753.2016.1208877Go to metadata icon

Poe, M. R., J. Donatuto, T. Satterfield. 2016. Sense of Place: Human Well-being Considerations for Ecological Restoration in Puget Sound. Coastal Management.Go to metadata icon

Puerta, P., M. E. Hunsicker, M. Hidalgo, P. Reglero, L. Ciannelli, A. Esteban, M. Gonzalez, A. Quetglas. 2016. The next link will exit from NWFSC web site Community-environment interactions explain octopus-shark spatial overlap. ICES Journal of Marine Science, 73(7):1901-1911.Go to metadata icon

Punt, A. E., A. D. MacCall, T. E. Essington, T. B. Francis, F. Hurtado-Ferro, K. Johnson, I. C. Kaplan, L. E. Koehn, P. S. Levin, W. J. Sydeman. 2016. Exploring the implications of sardine harvest control, accounting for predator dynamics: A MICE model. Ecological Modelling, 337(79-95).Go to metadata icon

Rhodes, L. D., R. B. Johnson, M. S. Myers. 2016. Effects of plant-based lipid feeds on hepatic and gastrointestinal histology and the gastrointestinal microbiome of sablefish (Anoplopoma fimbria). Aquaculture, 464:683-691. doi:http://dx.doi.org/10.1016/j.aquaculture.2016.05.010Go to metadata icon

Rindorf, A., C. M. Dichmont, P. S. Levin, P. M. Mace, S. Pascoe, R. Prellezo, A. E. Punt, D. Reid, R. Stephenson, C. Ulrich, M. Vinther, L. Worsoe Clausen. 2016. Pretty good multispecies yield. ICES Journal of Marine Science. doi:10.1093/icesjms/fsw071Go to metadata icon

Roberts, S. M., L. M. Grattan, A. M. Toben, C. Ausherman, V. L. Trainer, K. Tracy, J. G. Morris Jr. 2016. Preception of risk for domoic acid related health problems: A cross-cultural study. Harmful Algae.Go to metadata icon

Roegner, G. C., L. A. Weitkamp, D. J. Teel. 2016. The next link will exit from NWFSC web site Comparative use by Pacific salmon of shallow and deep water habitats in the Columbia River estuary prior to ocean entry. Marine and Coastal Fisheries, 8(1):536-552.Go to metadata icon

Russell, S., A. Arias-Arthur, K. Sparks, A. Varney. 2016. West Coast Communities and Catch Shares: The Early Years of Social Change. Coastal Management, 44(5):441-451.Go to metadata icon

Ruzicka, J. J., E. A. Daly, R. D. Brodeur. 2016. The next link will exit from NWFSC web site Evidence that summer jellyfish blooms impact Pacific Northwest salmon production. Ecosphere, 74(4):e01324.Go to metadata icon

Sabal, M. C., D. D. Huff, M. J. Henderson, J. Fiechter, J. A. Harding, S. A. Hayes. 2016. Contrasting patterns in growth and survival of Central Valley fall run Chinook salmon related to hatchery and ocean conditions. Environmental Biology of Fishes. doi:10.1007/s10641-016-0536-3Go to metadata icon

Sather, N. K., G. E. Johnson, D. J. Teel, A. J. Storch, J. R. Skalski, V. I. Cullinan. 2016. Shallow tidal freshwater habitats of the Columbia River: Spatial and temporal variability of fish communities and density, size, and genetic stock composition of juvenile Chinook Salmon. Transactions of the American Fisheries Society.Go to metadata icon

Sato, M, JK Horne, SL Parker-Stetter, T Essington, JE Keister, PE Moriarty, and L Li. 2016. Impacts of moderate hypoxia on fish and zooplankton prey distributions in a coastal fjord. Marine Ecology Progress Series. 560: 57-72.Go to metadata icon

Scheuerell, M. D. 2016. The next link will exit from NWFSC web site An explicit solution for calculating optimum spawning stock size from Ricker's stock recruitment model. PeerJ, 4:e1623.Go to metadata icon

Senigaglia, V., F. Christiansen, L. Bejder, D. Gendron, D. Lundquist, D. P. Noren, A. Schaffar, J. Smith, R. Williams, E. Martinez, K. Stockin, D. Lusseau. 2016. Meta-analyses of whalewatching impact studies: comparisons of cetacean responses to disturbance. Marine Ecology Progress Series.Go to metadata icon

Shelton, A. O., J. L. O'Donnell, J. F. Samhouri, N. Lowell, G. D. Williams, R. Kelly. 2016. A framework for inferring biological communities from environmental DNA. Ecological Applications.Go to metadata icon

Siedlecki, S. A., I. C. Kaplan, A. Herman, T. Nguyen, N. A. Bond, G. D. Williams, J. A. Newton, W. T. Peterson, S. R. Alin, R. A. Feely. 2016. DEVELOPMENT OF A SEASONAL FORECAST SYSTEM FOR NORTHERN CALIFORNIA CURRENT OCEAN CONDITIONS. Nature: Scientific Reports, 6:27203. doi:doi:10.1038/srep27203Go to metadata icon

Sommers, F., E. M. Mudrock, J. S. Labenia, D. H. Baldwin. 2016. Effects of Salinity on Olfactory Toxicity and Behavioral Responses of Juvenile Salmonids From Copper. Aquatic Toxicology, 175:260-268.Go to metadata icon

Spromberg, J.A., Baldwin, D.H., Damm, S.E., McIntyre, J.K., Huff, M., Davis, J.W., and Scholz, N.L. 2016. Widespread adult coho salmon spawner mortality in western U.S. urban watersheds: lethal impacts of stormwater runoff are reversed by soil bioinfiltration. Journal of Applied Ecology, 53: 398-407.Go to metadata icon

Stier, A. C., J. F. Samhouri, K. N. Marshall, E. J. Ward, M. Novak, P. S. Levin. 2016. Ecosystem Context and Historical Contingency in Apex Predator Recoveries. Science Advances, 2(5):e1501769. doi:10.1126/sciadv.1501769Go to metadata icon

Stier, A. C., J. F. Samhouri, S. Gray, R. G. Martone, M. Mach, B. S. Halpern, C. Kappel, C. Scarborough, P. S. Levin. 2016. Integrating expert perceptions into food web conservation and management". Conservation Letters. doi:10.1111/conl.12245Go to metadata icon

Suryan, R.M., K.J. Kuletz, S.L. Parker-Stetter, P.H. Ressler, M. Renner, J.K. Horne, E.V. Farley, and E.A. Labunski.  2016, Temporal shifts in seabird populations and spatial coherence with prey in the southeastern Bering Sea. Marine Ecology Progress Series, 549: 199-215.    Go to metadata icon

Sørhus, E., J. Incardona, T. Furmanek, S. Jentoft, S. Meier, R. Edvardsen. 2016. Developmental transcriptomics in Atlantic haddock: Illuminating pattern formation and organogenesis in non-model vertebrates. Developmental Biology.Go to metadata icon

Sørhus, E., J. Incardona, Ø. Karlsen, T. L. Linbo, L. Sørensen, T. Nordtug, T. van der Meeren, A. Thorsen, M. Thorbjørsen, S. Jentoft, R. Edvardsen, S. Meier. 2016. Crude oil exposures reveal roles for intracellular calcium cycling in haddock craniofacial and cardiac development. Scientific Reports.Go to metadata icon

Thorson, J. T., A. Rindorf, J. Gao, D. Hanselman, H. Winker. 2016. The next link will exit from NWFSC web site Global meta-analysis of density-dependent changes in effective area occupied for bottom-associated marine fishes. Proceedings of the National Academy of Sciences, 283(1840). doi:10.1098/rspb.2016.1853Go to metadata icon

Thorson, J. T., C. Minte-Vera. 2016. The next link will exit from NWFSC web site Relative magnitude of cohort, age, and year effects on size at age of exploited marine fishes. Fisheries Research, 180:45-53. doi:doi:10.1016/j.fishres.2014.11.016Go to metadata icon

Thorson, J. T., J. N. Ianelli, E. Larsen, M. D. Scheuerell, C. Szuwalski, E. Zipkin. 2016. Joint dynamic species distribution models: a tool for community ordination and spatiotemporal monitoring. Global Ecology and Biogeography, 25(9):http://onlinelibrary.wiley.com/doi/10.1111/geb.12464/abstract. doi:10.1111/geb.12464Go to metadata icon

Thorson, J. T., K. Kristensen. 2016. A generic approach to bias correction in population models using random effects, with spatial and age-structured examples. Fisheries Research, 175:6674. doi:doi:10.1016/j.fishres.2015.11.016Go to metadata icon

Thorson, J. T., M. L. Pinsky, E. Ward. 2016. Model-based inference for estimating distribution changes in marine fishes. Global Change Biology.Go to metadata icon

Turner, J. W., C. T. Berthiaume, R. Morales, E. V. Armbrust, M. S. Strom. 2016. Genomic evidence of adaptive evolution in emergent Vibrio parahaemolyticus ecotypes. Elementa: Science of the Anthropocene, 4:000117. doi:10.12952/journal.elementa.000117 (The next link will exit from NWFSC web siteFull Article | The next link will exit from NWFSC web siteOceans and Human Health Special Edition)Go to metadata icon

Urban, M. C., G. Bocedi, A. P. Hendry, J. B. Mihoub, G. Pe'er, A. Singer, J. R. Bridle, L. G. Crozier. and 14 others 2016. The next link will exit from NWFSC web site Improving the forecast for biodiversity under climate change. Science, 353(6304):aad8466.Go to metadata icon

Wade, A.A., B.K. Hand, R.P. Kovach, C.C. Muhlfeld, R.S. Waples, and G. Luikart.  2017. Assessments of species’ vulnerability to climate change: from pseudo to science.  Biodiversity and Conservation 26:223-229.Go to metadata icon

Wall, C. E., N. Bouwes, J. M. Wheaton, S. Bennett, W. C. Saunders, P. A. McHugh, C. E. Jordan. 2016. Design and monitoring of woody structures and their benefits to juvenile steelhead trout (Oncorhynchus mykiss) using a net rate of energy intake model. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Waples RK, Larson WA, and Waples RS.  2016.  Estimating contemporary effective population size in non-model species using linkage disequilibrium across thousands of loci.  Heredity (advance online publication, 24 August 2016; doi:10.1038/hdy.2016.60)Go to metadata icon

Waples, R.S.  2016.  Making sense of genetic estimates of effective population size.  Molecular Ecology 25:4689-4691 (Invited Perspective).  Go to metadata icon

Waples, R.S.  2016.  Life history traits and effective population size in species with overlapping generations revisited: the importance of adult mortality.  Heredity (published online 8 June 2016; doi:10.1038/hdy.2016.29).Go to metadata icon

Waples, R.S.  2016.  Tiny estimates of the Ne /N ratio in marine fishes:  Are they real?  J Fish Biology 89:2479-2504; doi 10.1111/jfb.13143.Go to metadata icon

Waples, R.S.  2016.  Proactive conservation:  An idea whose time has come?  Bioscience 66:86-87 (invited book review).Go to metadata icon

Waples, R.S., and Audzijonyte, A.  2016.  Fishery-induced evolution provides insights into adaptive responses of marine species to climate change.  Frontiers in Ecology and the Environment 14:217-224..Go to metadata icon

Waples, R.S., K. Hindar, S. Karlsson S., and J. J. Hard.  2106.  Evaluating the Ryman-Laikre effect for marine stock enhancement and aquaculture.  Current Zoology 62:617-627 (doi:10.1093/cz/zow060).Go to metadata icon

Waples RS, Adams PB, Bohnsack J, Taylor BL.  2016.  What is a 'significant portion' of a range?  Reply to Nelson et al.  Endangered Species Research 30:191-192 (Commentary).Go to metadata icon

Ward, E. J., M. E. Dahlheim, J. Waite, C. K. Emmons, K. N. Marshall, B. Chasco, K. C. Balcomb III. 2016. Long distance migration of prey synchronizes demographic rates of top oceanic predators. Ecosphere.Go to metadata icon

Warren, D. R., M. Kaylor, W. Keeton, P. M. Kiffney, H. Bechtold, J. Magee. 2016. The next link will exit from NWFSC web site Changing forests--changing streams:  riparian forest stand development and ecosystem function in temperate headwaters. Ecosphere, 7(8):e01435.Go to metadata icon

Webber, D. N., J. T. Thorson. 2016. The next link will exit from NWFSC web site Variation in growth among individuals and over time: A case study and simulation experiment involving tagged Antarctic toothfish. Fisheries Research, 180:6776. doi:10.1016/j.fishres.2015.08.016Go to metadata icon

Weijerman, M., J. Link, E. A. Fulton, E. Olsen, H. M. Townsend, S. Gaichas, C. Hansen, M. Skern-Mauritzen, I. C. Kaplan. 2016. ATLANTIS ECOSYSTEM MODEL SUMMIT: REPORT FROM A WORKSHOP. Ecological Modelling, 335:35-38.Go to metadata icon

Weitkamp, L.A., T. P. Good, D. E. Lyons, and D. D. Roby.  2016. The influence of environmental variation on the Columbia River estuarine fish community: Implications for predation on juvenile salmonids.  N. Pac. Anad. Fish. Comm. Bull. 6:33-44. doi:10.23849/npafcb6/33.44.Go to metadata icon

Wells, B. K., J. A. Santora, I. D. Schroeder, N. Mantua, W. J. Sydeman, D. D. Huff, and J. C. Field. 2016. Marine ecosystem perspectives on Chinook salmon recruitment: a synthesis of empirical and modeling studies from a California upwelling system. Marine Ecology Progress Series 552:271-284.Go to metadata icon

Wetzel, C. R., A. E. Punt. 2016. The impact of alternative rebuilding strategies to rebuild overfished stocks. ICES Journal of Marine Science.Go to metadata icon

Winans, G. A., J. Baker, M. McHenry, L. Ward, J. M. Myers. 2016. Genetic characterization of Oncorhynchus mykiss before and after dam removal with implications for recolonization of the Elwha River watershed, WA USA. Transactions of the American Fisheries Society, 146(1):160-172. doi:doi.org/10.1080/00028487.2016.1249293Go to metadata icon

Windrope, A. H., T. Quinn, K. L. Fresh, A. MacLennan, J. K. Gaydos. 2016. The next link will exit from NWFSC web site Marine shoreline management--a 35-year evaluation of outcomes in San Juan County, Washington, US. Coastal Management, 44(6):1-24.Go to metadata icon

Woods, P.J., D.S. Holland, A.E. Punt 2016. Evaluating the benefits and risks of species-transformation provisions in multispecies IFQ fisheries with joint production. Forthcoming in ICES Journal of Marine Science 73(7):1764-1773. DOI: 10.1093/icesjms/fsw031Go to metadata icon

Xu, H., L. Cao, Y. Zhang, R. B. Johnson, Y. Wei, K. Zheng, M. Liang. 2016. Dietary arachidonic acid differentially regulates the gonadal steroidogenesis in the marine teleost, tongue sole (Cynoglossus semilaevis), depending on fish gender and maturation stage. Aquaculture, 468:378-385.Go to metadata icon

Yamamoto, Y., J. A. Luckenbach, G. Young, P. Swanson. 2016. Alterations in gene expression during fasting-induced atresia of early secondary growth ovarian follicles of coho salmon, Oncorhynchus kisutch. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology, 201:1-11.Go to metadata icon

Zeman, S. M., R. D. Brodeur, E. A. Daly, K. R. Sutherland. 2016. The next link will exit from NWFSC web site Prey selection patterns of Chrysaora fuscescens in the northern California Current. Journal of Plankton Research, 38(6):1433-1443. doi:10.1093/plankt/fbw065Go to metadata icon