Northwest Fisheries Science Center

Publications: Journal Article

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2017

Adams, J. N., R. D. Brodeur, E. A. Daly, T. W. Miller. 2017. Prey availability and feeding ecology of juvenile Chinook (Oncorhynchus tshawytscha) and coho (O. kisutch) salmon in the northern California Current ecosystem, based on stomach content and stable isotope analyses. Marine Biology.Go to metadata icon

Adams NG, Schwenke P, Smith GJ, Trainer VL (2017) Microsatellite Markers for Population Genetic Applications in the Domoic Acid-producing Diatom Pseudo-nitzschia australis Frenguelli (Bacillariophyceae). Protist 168: 197-205Go to metadata icon

Anderson, L. E., M. Plummer. 2017. Recreational demand for shellfish harvesting under environmental closures. Marine Resource Economics, 32(1):43-57. doi:10.1086/688975Go to metadata icon

Anderson, S. C., E. J. Ward, A. O. Shelton, M. Adkison, A. H. Beaudreau, R. Brenner, A. C. Haynie, J. C. Shriver, J. Watson, B. Williams. 2017. Benefits and risks of diversication for individual fishers. Proceedings of the National Academy of Science.Go to metadata icon

Ardón, M., A. M. Helton, M. D. Scheuerell, E. S. Bernhardt. 2017. The next link will exit from NWFSC web site Fertilizer legacies meet saltwater incursion: challenges and constraints for coastal plain wetland restoration. Elementa: Science of the Anthropocene, 5:41. doi:10.1525/elementa.236Go to metadata icon

Argostegui, M. C., J. M. Smith, A. N. Kagley, D. Spilsbury-Puci, K. L. Fresh, T. P. Quinn. 2017. The next link will exit from NWFSC web site Spatially clustered movement patterns and the segregation of subadult Chinook salmon within the Salish Sea. Marine and Coastal Fisheries, 9(1):1-12.Go to metadata icon

Barnett, L., T. A. Branch, R. A. Ranasinghe, T. E. Essington. 2017. The next link will exit from NWFSC web site Old-growth fishes become scarce under fishing. Current Biology, 27:2843-2848. doi:10.1016/j.cub.2017.07.069Go to metadata icon

Bednarsek, N., R. A. Feely, N. Tolimieri, A. J. Hermann, S. A. Siedlecki, H. Poortenar, G. G. Waldbusser, P. McElhany, S. R. Alin, J. L. Menkel. 2017. Exposure history determines pteropod vulnerability to ocean acidification along the US West Coast. Nature: Scientific Reports, 7:4526:1-12. doi:10.1038/s41598-017-03934-zGo to metadata icon

Bednarsek, N., T. Klinger, C. J. Harvey, S. Weisberg, R. M. McCabe, R. A. Feely, J. Newton, N. Tolimieri. 2017. New ocean, new needs: application of pteropod shell dissolution as a biological indicator for marine resource management. Ecological Indicators, 76:240-244. doi:10.1016/jecolind.2017.01.025Go to metadata icon

Berdalet, E., R. Kudela, E. Urban, H. Enevoldsen, N. S. Banas, M. Burford, C. J. Gobler, B. Karlson, P. T. Lim, L. MacKenzie, M. Montresor, V. L. Trainer, G. Usup, K. Yin. 2017. GlobalHAB: a new program to promote international research, observations, and modeling of harmful algal blooms in aquatic systems. Oceanography.Go to metadata icon

Jennie L. Bolton, Paula A. White, Douglas G. Burrows, Jessica I. Lundin &
Gina M. Ylitalo (2017) Food resources influence levels of persistent organic pollutants and stable
isotopes of carbon and nitrogen in tissues of Arctic foxes (Vulpes lagopus) from the Pribilof Islands,
Alaska, Polar Research, 36:sup1, 12, DOI: 10.1080/17518369.2017.1310994Go to metadata icon

Bosley, K. M., L. Copeman, B. R. Dumbauld, K. L. Bosley. 2017. Identification of thalassinidean shrimp food sources in an Oregon estuary using fatty acid analysis and stable isotope ratios. Estuaries and Coasts, 40(4):1113-1130. doi:10.1007/s12237-016-0193-yGo to metadata icon

Brette, F., H. L. Shiels, G. L. Galli, C. Cros, J. Incardona, N. L. Scholz, B. A. Block. 2017. A novel cardiotoxic mechanism for a pervasive global pollutant. Scientific Reports, 7:41476Go to metadata icon

Chasco, B., I. C. Kaplan, E. J. Ward, A. Thomas, A. Acevedo-Gutierrez, D. P. Noren, M. J. Ford, M. B. Hanson, J. Scordino, S. J. Jeffries, S. F. Pearson, K. N. Marshall. 2017. Estimates of Chinook salmon consumption in Puget Sound area waters by four marine mammal predators from 1970  2015. Canadian Journal of Fisheries and Aquatic Sciences. doi:10.1139/cjfas-2016-0203Go to metadata icon

Cook, M. A., J. S. Lee, K. C. Massee, T. H. Wade, F. W. Goetz. 2017. Effects of rearing temperature on growth and survival of larval sablefish (Anoplopoma fimbria)., 479:91-99.Go to metadata icon

Cram, J., C. E. Torgersen, R. Klett, G. R. Pess, D. May, T. N. Pearsons, A. H. Dittman. 2017. Spatial variability of Chinook Salmon spawning site fidelity and habitat preferences. Transactions of the American Fisheries Society, 146(2):206-221. doi:http://dx.doi.org/10.1080/00028487.2016.1254112Go to metadata icon

Daly, E. A., R. D. Brodeur, T. D. Auth. 2017. The next link will exit from NWFSC web site Anomalous ocean conditions in 2015: impacts on spring Chinook salmon and their prey field. Marine Ecology Progress Series, 566:169-182.Go to metadata icon

Deacy, W. W., J. B. Armstrong, W. B. Leacock, C. T. Robbins, D. D. Gustine, E. J. Ward, J. A. Erlenbach, J. A. Stanford. 2017. Phenological synchronization disrupts a keystone trophic interaction. Proceedings of the National Academy of Sciences.Go to metadata icon

Du, B., Lofton, J.M., Peter, K.T., Gipe, A.D., James, C.A., McIntyre, J.K., Scholz, N.L., Baker, J.E., and Kolodziej, E.P. 2017. Suspect and non-target screening of organic contaminants and potential toxicants in highway runoff and fish tissue with high resolution time of flight mass spectrometry. Environmental Science: Processes and Impacts, 19:1185-1196.Go to metadata icon

Durban, J. W., H. Fearnbach, D. G. Burrows, G. M. Ylitalo, R. Pitman. 2017. Morphological and ecological evidence for two sympatric forms of Type B killer whale around the Antarctic Peninsula. Polar Biology, 40:231-236.Go to metadata icon

Faulkner, J. R., V. N. Minin. 2017. The next link will exit from NWFSC web site Locally adaptive nonparametric smoothing with Markov random fields and shrinkage priors. Bayesian Analysis, Advance publication.Go to metadata icon

Frey, P. H., A. A. Keller, V. Simon. 2017. Dynamic population trends observed in the deep-living Pacific flatnose, Antimora microlepis, on the U.S. West Coast. Deep Sea Research Part I: Oceanographic Research.Go to metadata icon

Fuhrman, A. E., D. A. Larsen, E. A. Steel, G. Young, B. R. Beckman. 2017. Chinook salmon emergence phenotypes: describing the relationships between temperature, emergence timing, and condition factor in a reaction norm framework. Ecology of Freshwater Fish. doi:10.1111/eff.12351Go to metadata icon

Fuller, E., J. F. Samhouri, J. Stoll, J. Watson, S. A. Levin. 2017. Human Connectivity in Social-Ecological Systems. Science.Go to metadata icon

Fung, H., R. S. Waples. 2017. Performance of IUCN proxies for generation length. Conservation Biology 31:883-893; DOI: 10.1111/cobi.12901).Go to metadata icon

Gertseva, V. V., S. E. Matson, J. M. Cope. 2017. Spatial growth variability in marine fish: example from northeast Pacific groundfish. ICES Journal of Marine Science, 74(6):1602-1613.Go to metadata icon

Gladics AJ, EF Melvin, RM Suryan, TP Good, JE Jannot, and TJ Guy. 2017. Fishery-specific solutions to seabird bycatch in the U.S. West Coast sablefish fishery. Fisheries Research 196: 85-95.Go to metadata icon

Goethel, D. R., A. M. Berger. 2017. Accounting for Spatial Complexities in the Calculation of Biological Reference Points: Effects of Misdiagnosing Population Structure for Stock Status Indicators. Canadian Journal of Fisheries and Aquatic Sciences. doi:10.1139/cjfas-2016-0290Go to metadata icon

Gruss, A., K. A. Rose, J. Simons, C. H. Ainsworth, E. A. Babcock, D. D. Chagaris, K. de Mutsert, J. Froeschke, P. Himchak, I. C. Kaplan, M. Zetina Rejon. 2017. Recommendations on the use of ecosystem modeling for informing ecosystem-based fisheries management and restoration outcomes in the Gulf of Mexico. Marine and Coastal Fisheries, 9:281295. doi:http://dx.doi.org/10.1080/19425120.2017.1330786Go to metadata icon

Guzman, J. M., J. A. Luckenbach, M. A. Middleton, K. C. Massee, C. Jensen, F. W. Goetz, A. Jasonowicz, P. Swanson. 2017. Reproductive life history of sablefish (Anoplopoma fimbria) from the U.S. Washington coast. PLoS ONE, 12(9):e0184413. doi:https://doi.org/10.1371/ journal.pone.0184413Go to metadata icon

Hamner RH, R Constantine, R Mattlin, RS Waples, and CS Baker.  2017.  Genotype-based estimates of local abundance and effective population size for Hector’s dolphins.  Biological Conservation 211:150-160.Go to metadata icon

Harvey, C. J., C. R. Kelble, F. B. Schwing. 2017. Implementing "the IEA": using integrated ecosystem assessment frameworks, programs, and applications in support of operationalizing ecosystem-based management. ICES Journal of Marine Science, 74:398-405. doi:10.1093/icesjms/fsw201Go to metadata icon

Havey, M. A., A. H. Dittman, T. P. Quinn, S. C. Lema, D. May. 2017. Experimental evidence for olfactory imprinting by sockeye salmon, Oncorhynchus nerka, at embryonic and smolt stages. Transactions of the American Fisheries Society, 146(1):74-83. doi:http://dx.doi.org/10.1080/00028487.2016.1238409Go to metadata icon

Helyer, J., J. F. Samhouri. 2017. Fishing and environmental influences on herbivorous fish biomass across the Hawaiian Archipelago. Marine Ecology Progress Series, 575:1-15. doi:https://doi.org/10.3354/meps12235Go to metadata icon

Hines, D., M. Liermann, T. Seder, B. Cluer, G. R. Pess, C. Shoenebeck. 2017. The next link will exit from NWFSC web site Diel shifts in salmonid fry micro-habitat selection. North American Journal of Fisheries Management, Early view.Go to metadata icon

Holland, D.S., C. Speir, J. Agar, S. Crosson, G. DePiper, S. Kasperski, D. Kitts, and L. Perruso. 2017. The Impact of Catch Shares on Diversification of Fishers¿ Income and Risk? Proceedings of the National Academy of Sciences 114 (35) 9302-9307Go to metadata icon

Holland, D.S., E. Steiner, and A. Warlick. 2017. Can Vessel Buybacks Pay Off: An Evaluation of an Industry Funded Fishing Vessel Buyback. Marine Policy 82:8-15 doi.org/10.1016/j.marpol.2017.05.002.Go to metadata icon

Holsman, K. K., J. F. Samhouri, G. Cook, E. L. Hazen, E. Olsen, M. Dillard, S. K. Gaichas, C. Kelble, M. J. Fogarty, K. S. Andrews. 2017. An ecosystem-based approach to risk assessment. Ecosystem Health & Sustainability, 3:e01256. doi:10.1002/ehs2.1256Go to metadata icon

Holt, M. M., M. B. Hanson, D. A. Giles, C. K. Emmons, J. T. Hogan. 2017. Noise levels received by endangered killer whales (Orcinus orca) before and after vessel regulations. Endangered Species Research, 34:15-26. doi:https://doi.org/10.3354/esr00841Go to metadata icon

Hussey, N., J. DiBattista, J. W. Moore, E. J. Ward, A. Fisk, S. Kessel, T. Guttridge, K. Feldheim, B. Franks, S. Gruber, O. Weideli, D. Chapman. 2017. Risky business for a juvenile marine predator? Testing the influence of foraging strategies on size and growth rate under natural conditions. Proceedings of the Royal Society of London. Series B.Go to metadata icon

Incardona, J. 2017. Molecular mechanisms of crude oil developmental toxicity in fish. Archives of Environmental Contamination and Toxicology.Go to metadata icon

Johnson, R. B., E. L. Kroeger, W. L. Reichert, C. S. Carter, M. B. Rust. 2017. Uptake and selective partitioning of dietary lipids and fatty acids to ovarian and muscle tissue of maturing coho salmon during secondary oocyte growth. Comparative Biochemistry and Physiology Part B: Comparative Biochemistry, 208-209:7-18.Go to metadata icon

Jones, T., J. K. Parrish, A. E. Punt, V. L. Trainer, R. Kudela, J. Lang, M. Brancato, A. Odell, B. M. Hickey, V. Participant. 2017. A perfect storm:  massive marine bird mortality caused by a dinoflagellate bloom in the Northeast Pacific. Marine Ecology Progress Series, 579:111-127. doi:https://doi.org/10.3354/meps12253Go to metadata icon

Kagley, A. N., J. M. Smith, K. L. Fresh, K. E. Frick, T. P. Quinn. 2017. The next link will exit from NWFSC web site Residency, partial migration, and late egress of sub-adult Chinook salmon (Oncorhynchus tshawytscha) and comparisons with coho salmon (O. kisutch) in Puget Sound, Washington. Fishery Bulletin, 115(4):544-555.Go to metadata icon

Kaplan, I. C., L. E. Koehn, E. E. Hodgson, K. Marshall, T. E. Essington. 2017. Modeling food-web effects of low sardine and anchovy abundance in the California Current. Ecological Modelling.Go to metadata icon

Kaylor, M., D. R. Warren, P. M. Kiffney. 2017. The next link will exit from NWFSC web site Long-term effects of riparian forest harvest on light in Pacific Northwest streams. Freshwater Science, 36(1):1-13.Go to metadata icon

Keller, A. A., L. Ciannelli, W. W. Wakefield, V. H. Simon, J. A. Barth, S. D. Pierce. 2017. Species-specific responses of demersal fishes to near-bottom oxygen levels within the California Current large marine ecosystem. Marine Ecology Progress Series, (568)151-173. doi:https://doi.org/10.3354/meps12066Go to metadata icon

Kelly, R. P., C. Closek, J. L. O'Donnell, J. Kralj, A. O. Shelton, J. F. Samhouri. 2017. Genetic and Manual Survey Methods Yield Different and Complementary Views of an Ecosystem. Frontiers in Marine Science.Go to metadata icon

Kim, J., U. Tillmann, N. G. Adams, B. Krock, W. L. Stutts, J. R. Deeds, M. Han, V. L. Trainer. 2017. Identification of Azadinium species and a new azaspiracid from Azadinium poporum in Puget Sound, Washington State, USA. Harmful Algae, 68:152-167.Go to metadata icon

Kodama, M., J. J. Hard, K. A. Naish. 2017. Mapping of quantitative trait loci for temporal growth and age at maturity in coho salmon: evidence for genotype-by-sex interactions. Marine Genomics. doi:10.1016/j.margen.2017.07.004Go to metadata icon

 Donald A. Larsen, Mollie A. Middleton, Jon T. Dickey, Ryan S. Gerstenberger, Chris V. Brun & Penny Swanson (2017) Use of Morphological and Physiological Indices to Characterize Life History Diversity in Juvenile Hatchery Winter-Run Steelhead, Transactions of the American Fisheries Society, 146:4, 663-679, DOI: 10.1080/00028487.2017.1296492Go to metadata icon

Lee, J. S., L. Britt, M. A. Cook, T. H. Wade, B. A. Berejikian, F. W. Goetz. 2017. Effect of Light Intensity and Feed Density on Feeding Behavior, Growth, and Survival of Larval Sablefish Anoplopoma fimbria. Aquaculture Research, 48:4438-4448. doi:10.1111/are.13269Go to metadata icon

Lee, J. S., M. A. Cook, J. A. Luckenbach, B. A. Berejikian, C. A. Simchick, S. M. Oden, F. W. Goetz. 2017. Investigation of long-term effects of larval rearing temperature on growth, deformities, flesh quality, and phenotypic sex of cultured sablefish (Anoplopoma fimbria). Aquaculture, 479:91-99. doi:http:// dx.doi.org/10.1016/j.aquaculture.2017.05.010Go to metadata icon

Lefebvre, K. A., P. Kendrick, W. Ladiges, E. M. Hiolski, B. E. Ferriss, D. R. Smith, D. J. Marcinek. 2017. The next link will exit from NWFSC web site Chronic low-level exposure to the common seafood toxin domoic acid causes cognitive deficits in mice. Harmful Algae, 64(2017):20-29.Go to metadata icon

Lehman, B., D. D. Huff, S. A. Hayes, S. T. Lindley. 2017. The next link will exit from NWFSC web site Relationships between Chinook salmon swimming performance and water quality in the San Joaquin River, California. Transactions of the American Fisheries Society, 146(2):349-358.Go to metadata icon

Liermann, M., G. R. Pess, M. McHenry, J. R. McMillan, M. Elofson, T. R. Bennett, R. Moses. 2017. The next link will exit from NWFSC web site Relocation and recolonization of coho salmon Oncorhynchus kisutch in two tributaries to the Elwha River:  implications for management and monitoring. Transactions of the American Fisheries Society.Go to metadata icon

Linder, H., J. K. Horne, E. J. Ward. 2017. Evaluating Models that Characterize Baseline Conditions: Ecological Monitoring at Marine Renewable Energy Sites. Ecological Indicators, 83:178-191.Go to metadata icon

Lomeli, M. J., O. S. Hamel, W. W. Wakefield, D. L. Erickson. 2017. Improving catch utilization in the U.S. West Coast groundfish bottom trawl fishery: An evaluation of T90-mesh and diamond-mesh cod ends. Marine and Coastal Fisheries, 9(1):149-160.Go to metadata icon

Luckenbach, J. A., W. T. Fairgrieve, E. S. Hayman. 2017. Establishment of monosex female production of sablefish (Anoplopoma fimbria) through direct and indirect sex control. Aquaculture, 479:285-296. doi:http://dx.doi.org/10.1016/j.aquaculture.2017.05.037Go to metadata icon

Marsha, A., E. A. Steel, A. H. Fullerton, C. Sowder. 2017. Monitoring riverine thermal regimes on stream networks: Insights into spatial sampling designs from the Snoqualmie River, WA. Ecological Indicators, 84:11-26. doi:http://dx.doi.org/10.1016/j.ecolind.2017.08.028Go to metadata icon

Marshall, K. N., I. C. Kaplan, E. E. Hodgson, A. J. Hermann, D. S. Busch, P. McElhany, T. E. Essington, C. J. Harvey, E. A. Fulton. 2017. Risks of ocean acidification on the California Current food web and fisheries: ecosystem model projections. Global Change Biology. doi:10.1111/gcb.13594Go to metadata icon

Marty, M. S., A. Blankenship, J. Chambers, L. Constantine, W. Kloas, A. Kumar, L. Lagadic, J. P. Meador, D. Pickford, T. Schwarz, T. Verslycke. 2017. Population-Relevant Endpoints in the Evaluation of Endocrine-active Substances (EAS) for Ecotoxicological Hazard and Risk Assessment. Integrated Environmental Assessment and Management, 13(2):317-330. doi:10.1002/ieam.1887Go to metadata icon

Matson, S. E., I. G. Taylor, V. V. Gertseva, M. W. Dorn. 2017. Novel Catch Projection Model for a Commercial Groundfish Catch Shares Fishery. Ecological Modelling, 349:51-61. doi:10.1016/j.ecolmodel.2017.01.023Go to metadata icon

Matthiessen, P., G. Ankley, R. Biever, P. Bjerregaard, C. Bogert, J. P. Meador. 2017. The next link will exit from NWFSC web site Recommended approaches to the scientific evaluation of ecotoxicological hazards and risks of endocrine-active substances. Integrated Environmental Assessment and Management, 13(2):267-279. doi:10.1002/ieam.1885Go to metadata icon

McGowan, D. W., J. K. Horne, S. L. Parker-Stetter. 2017. Variability in species composition and distribution of forage fish in the Gulf of Alaska. Deep Sea Research Part II: Topical Studies in Oceanography.Go to metadata icon

McHugh, P. A., W. C. Saunders, N. Bouwes, C. E. Wall, S. Bangen, J. M. Wheaton, M. Nahorniak, J. Ruzycki, I. A. Tattam, C. E. Jordan. 2017. Linking models across scales to assess the viability and restoration potential of a threatened population of steelhead (Oncorhynchus mykiss) in the Middle Fork John Day River, Oregon, USA. Ecological Modelling, 355:24-38. doi:http://dx.doi.org/10.1016/j.ecolmodel.2017.03.022Go to metadata icon

McKibben, S. M., W. T. Peterson, A. M. Wood, V. L. Trainer, M. Hunter, A. E. White. 2017. The next link will exit from NWFSC web site Climatic regulation of the neurotoxin domoic acid. Proceedings of the National Academy of Sciences, USA, 114(2):239-244.Go to metadata icon

Meador, J. P., A. Yeh, E. P. Gallagher. 2017. Determining potential adverse effects in marine fish exposed to pharmaceuticals and personal care products with the fish plasma model and whole-body tissue concentrations. Environmental Pollution, 230:1018-1029. doi:http://dx.doi.org/10.1016/j.envpol.2017.07.047Go to metadata icon

Miller, J. A., W. T. Peterson, L. A. Copeman, X. Du, C. A. Morgan, M. N. Litz. 2017. Temporal variation in the biochemical ecology of lower trophic levels in the Northern California Current. Progress in Oceanography, 155:1-12.Go to metadata icon

Monnahan, C. C., J. T. Thorson, T. A. Branch. 2017. The next link will exit from NWFSC web site Faster estimation of Bayesian models in ecology using Hamiltonian Monte Carlo. Methods in Ecology and Evolution, 8(3):339-348. doi:10.1111/2041-210X.12681Go to metadata icon

Moore, M. E., B. A. Berejikian. 2017. Population, habitat, and marine location effects on early marine survival and migration behavior of Puget Sound steelhead smolts. Ecosphere.Go to metadata icon

Moser, M. L., K. Patten, S. C. Corbett, B. E. Feist, S. T. Lindley. 2017. The next link will exit from NWFSC web site Abundance and distribution of sturgeon feeding pits in a Washington estuary. Environmental Biology of Fishes, 100(5):597-609.Go to metadata icon

Nielsen, J.R., E. Thunberg, D. Holland, J.O. Schmidt et al. 2017. Integrated Ecological-Economic Fisheries Models – Evaluation, Review and Challenges for Implementation. Fish and Fisheries DOI: 10.1111/faf.12232Go to metadata icon

Noren, D. P., M. M. Holt, R. C. Dunkin, N. M. Thometz, T. M. Williams. 2017. Comparative and cumulative energetic costs of odontocete responses to anthropogenic disturbance. Proceedings of Meetings on Acoustics, 27. doi:http://dx.doi.org/10.1121/2.0000357Go to metadata icon

Noren, D. P., M. M. Holt, R. C. Dunkin, T. M. Williams. 2017. Echolocation is cheap for some mammals: dolphins conserve oxygen while producing high-intensity clicks. Journal of Experimental Marine Biology and Ecology, 495:103-109. doi:http://dx.doi.org/10.1016/j.jembe.2017.07.002Go to metadata icon

OMalley, K. g., K. Corbett, D. P. Jacobson, T. M. Jackson, G. C. Roegner. 2017. Genetic connectivity of Dungeness crab (Cancer magister) across oceanographic regimes. Journal of Shellfish Research.Go to metadata icon

Gary R. O¿Brien, Joseph Wheaton, Kirstie Fryirs, Peter McHugh, Nicolaas Bouwes, Gary Brierley & Chris Jordan (2017) A geomorphic assessment to inform strategic stream restoration planning in the Middle Fork John Day Watershed, Oregon, USA, Journal of Maps, 13:2, 369-381Go to metadata icon

O'Donnell, J. L., R. P. Kelly, A. O. Shelton, J. F. Samhouri, N. Lowell, G. D. Williams. 2017. Spatial dispersion of environmental DNA in a nearshore marine habitat. PeerJ.Go to metadata icon

Peters, R. J., M. Liermann, M. L. McHenry, P. Bakke, G. R. Pess. 2017. The next link will exit from NWFSC web site Changes in streambed composition in salmonid spawning habitat of the Elwha River during dam removal. Journal of American Water Resources Association, Early view.Go to metadata icon

Phillips, E. M., J. K. Horne, J. E. Zamon. 2017. The next link will exit from NWFSC web site Predator-prey interactions influenced by a dynamic river plume. Canadian Journal of Fisheries and Aquatic Sciences, preview online.Go to metadata icon

Phillips, N. D., N. Reid, T. Thys, C. Harrod, N. Payne, C. A. Morgan, H. J. White, S. Porter, J. D. Houghton. 2017. The next link will exit from NWFSC web site Applying species distribution modelling to a data poor, pelagic fish complex: the ocean sunfishes. Journal of Biogeography, Early view.Go to metadata icon

Raverty, S. A., L. D. Rhodes, E. Zabek, A. Eshghi, C. E. Cameron, M. B. Hanson, J. P. Schroeder. 2017. Respiratory Microbiome of Endangered Southern Resident Killer Whales and Microbiota of Surrounding Sea Surface Microlayer in the Eastern North Pacific. Scientific Reports, 7(394):1-12. doi:10.1038/s41598-017-00457-5Go to metadata icon

Richerson, K. and D.S. Holland 2017. Quantifying and predicting responses to a West Coast salmon fishery closure. ICES Journal of Marine Science https://doi.org/10.1093/icesjms/fsx093Go to metadata icon

Samhouri, J. F., K. S. Andrews, G. Fay, C. J. Harvey, E. L. Hazen, S. Hennessey, K. K. Holsman, M. E. Hunsicker, S. I. Large, K. Marshall, A. C. Stier, J. Tam, S. Zador. 2017. Defining ecosystem thresholds for human activities and environmental pressures in the California Current. Ecosphere.Go to metadata icon

Shelton, A. O., T. B. Francis, B. E. Feist, G. Williams, A. Lindquist, P. S. Levin. 2017. 40 years of seagrass population stability and resilience in an urbanizing estuary. Journal of Ecology.Go to metadata icon

Sørhus, E., Incardona, J.P., Furmanek, T., Scholz, N.L., Meier, S., Edvardsen, R.B., and Jentoft, S. 2017. Novel adverse outcome pathways revealed by chemical genetics in a developing marine fish. eLife, 6:e20207.Go to metadata icon

Steel, E. A., T. J. Beechie, C. E. Torgersen, A. H. Fullerton. 2017. The next link will exit from NWFSC web site Envisioning, quantifying, and managing thermal regimes on river networks. Bioscience, 67(6):506-522.Go to metadata icon

Sørensen, L., E. Sørhus, T. Nordtug, J. Incardona, T. L. Linbo, L. Giovanetti, Ø. Karlsen, S. Meier. 2017. Oil droplet fouling and differential PAH toxicokinetics in embryos of Atlantic haddock and cod. PLoS ONE.Go to metadata icon

Tabor, R. A., F. T. Waterstrat, D. W. Lantz, H. B. Berge, M. Liermann. 2017. The next link will exit from NWFSC web site Distribution, density, and size of migratory and fluvial sculpins in relation to barriers in Puget Sound lowland streams. North American Journal of Fisheries Management, 37(4):729-742.Go to metadata icon

Thometz, N. M., J. L. Dearolf, R. C. Dunkin, D. P. Noren, M. M. Holt, O. C. Sims, B. C. Cathey, T. M. Williams. 2017. Comparative physiology of sound production muscles in two odontocetes, the bottlenose dolphin (Tursiops truncatus) and the harbor porpoise (Phocoena phocoena). Journal of Comparative Physiology, B.Go to metadata icon

Thorson, J. T., J. Cope. 2017. The next link will exit from NWFSC web site Uniform, uninformed or misinformed?: The lingering challenge of minimally informative priors in data-limited Bayesian stock assessments. Fisheries Research, 194:164-172. doi:10.1016/j.fishres.2017.06.007Go to metadata icon

Thorson, J. T., K. F. Johnson, R. D. Methot, I. G. Taylor. 2017. The next link will exit from NWFSC web site Model-based estimates of effective sample size in Stock Synthesis using the Dirichlet-multinomial distribution. Fisheries Research, 192:84-93.Go to metadata icon

Thorson, J. T., K. Somers, J. E. Jannot. 2017. Using spatio-temporal models of population growth and movement to monitor overlap between human impacts and fish populations. Journal of Applied Ecology, 52(2):577587. doi:10.1111/1365-2664.12664Go to metadata icon

Thorson, J. T., L. Barnett. 2017. The next link will exit from NWFSC web site Comparing estimates of abundance trends and distribution shifts using single- and multispecies models of fishes and biogenic habitat. ICES Journal of Marine Science, 74(5):1311-1321. doi:https://doi.org/10.1093/icesjms/fsw193Go to metadata icon

Thorson, J. T., S. Munch, D. Swain. 2017. The next link will exit from NWFSC web site Estimating partial compensation to bridge between neutral and niche theory in spatio-temporal community dynamics. Ecology, 98(5):1277-1289. doi:10.1002/ecy.1760Go to metadata icon

Timpane-Padgham, B., T. J. Beechie, T. Klinger. 2017. The next link will exit from NWFSC web site A systematic review of ecological attributes that confer resilience to climate change in environmental restoration. PLoS ONE, 12(3):e0173812.Go to metadata icon

Tolimieri, N., E. E. Holmes, G. Williams, R. Pacunski, D. Lowry. 2017. Population assessment using multivariate time-series analysis: A case study of rockfishes in Puget Sound. Ecology and Evolution, 7:2846-2860. doi:10.1002/ece3.2901Go to metadata icon

Tommasi, D., A. J. Hobday, R. D. Methot, I. C. Kaplan, J. P. Eveson, K. K. Holsman, T. J. Miller, S. K. Gaichas, M. Gehlen, A. Pershing, G. A. Vecchi, R. Msadek, T. Delworth, M. Eakin, M. A. Haltuch, R. Sefarian, C. Spillman, J. R. Hartog, S. A. Siedlecki, J. F. Samhouri, B. Muhling, R. Ash, M. L. Pinsky, V. Saba, S. Kapnick, C. F. Gaitan, R. R. Rykaczewski, M. A. Alexander, Y. Xue, K. Pegion, P. D. Lynch, M. R. Payne, T. Kristiansen, P. Lehodey, C. Werner. 2017. Managing living marine resources in a dynamic environment: the role of seasonal to decadal climate forecasts. Progress in Oceanography, 152:15-49.Go to metadata icon

Vizza, C., B. L. Sanderson, H. J. Coe, D. T. Chaloner. 2017. The next link will exit from NWFSC web site Evaluating the consequences of salmon nutrients for riparian organisms: linking condition metrics to stable isotopes. Ecology and Evolution, 7(5):1313-1324.Go to metadata icon

Waples, R.S., A. Elz, B.D. Arnsberg, J.R. Faulkner, J.J. Hard, E. Timmins-Schiffman, L.K. Park.  2017. Human-mediated evolution in a threatened species? Juvenile life-history changes in Snake River salmon. Evolutionary Applications 10:667-681; DOI: 10.1111/eva.12468.Go to metadata icon


Waples, R.S., and E.C. Anderson. 2017.  Purging putative siblings from population genetic datasets: A cautionary view.  Molecular Ecology 26:1211-1224.Go to metadata icon

Ward, E. J., M. Adkison, J. Couture, S. C. Dressel, M. Litzow, S. Moffitt, T. Hoem Neher, J. Trochta, R. Brenner. 2017. Evaluating signals of oil spill impacts, climate, and species interactions in Pacific herring and Pacific salmon populations in Prince William Sound and Copper River, Alaska. PLoS ONE.Go to metadata icon

Wathen, G., N. Weber, S. Bennett, N. Bouwes, C. E. Jordan. 2017. Assessing the assumptions of geographic closure in mark-recapture surveys using passive integrated transponder (PIT) antennas as virtual block nets. North American Journal of Fisheries Management.Go to metadata icon

Weber N, Bouwes N, Pollock MM, Volk C, Wheaton JM, Wathen G, et al. (2017) Alteration of stream temperature by natural and artificial beaver dams. PLoS ONE 12(5): e0176313. https://doi.org/10.1371/journal.pone.0176313Go to metadata icon

Wells, B. K., J. A. Santora, M. J. Henderson, P. Warzybok, J. Jahncke, R. W. Bradley, D. D. Huff, I. D. Schroeder, P. Nelson, J. C. Field, and D. G. Ainley. 2017. Environmental conditions and prey-switching by a seabird predator impact juvenile salmon survival. Journal of Marine Systems 174:54-63.  (The next link will exit from NWFSC web siteAccess free copy)Go to metadata icon

Wheaton, J. M., P. A. McHugh, N. Bouwes, W. C. Saunders, S. Bangen, P. Bailey, M. Nahorniak, C. E. Wall, C. E. Jordan. 2017. Upscaling Site-Scale Ecohydraulic Models to Inform Salmonid Population-Level Life Cycle Modelling and Restoration Actions Lessons from the Columbia River Basin. Earth Surface Processes and Landforms. doi:10.1002/esp.4137Go to metadata icon

Yeh, A., D. J. Marcinek, J. P. Meador, E. P. Gallagher. 2017. Effect of contaminants of emerging concern on liver mitochondrial function in Chinook salmon. Aquatic Toxicology, 190:21-31. doi:10.1016/j.aquatox.2017.06.011Go to metadata icon

Ylitalo, G. M., T. K. Collier, B. F. Anulacion, K. Juaire, R. H. Boyer, D. A. da Silva, J. L. Keene, B. A. Stacy. 2017. Determining Oil and Dispersant Exposure in Sea Turtles From the Northern Gulf of Mexico Resulting From the Deepwater Horizon Oil Spill. Endangered Species Research, 33:9-24.Go to metadata icon

Zipkin, E., S. Rossman, C. B. Yackulic, J. D. Wiens, J. T. Thorson, R. J. Davis, E. C. Grant. 2017. The next link will exit from NWFSC web site Integrating count and detectionnondetection data to model population dynamics. Ecology, 98(6):1640-1650. doi:10.1002/ecy.1831Go to metadata icon

van Leeuwen, C., T. Tokk, T. O. Haugen, P. M. Kiffney, J. Museth. 2017. The next link will exit from NWFSC web site Small larvae in large rivers:  observations on downstream movement of European grayling Thymallus thymallus during early life stages. Journal of Fish Biology, Early view.Go to metadata icon