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Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.
Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216
Balmer, B. C., E. S. Zolman, J. L. Bolton, D. A. Fauquier, E. P. Fougères, R. C. George, T. Goldstein, M. Gowen, T. Kolkmeyer, C. Le-Bert, B. Mase, T. Norton, J. Peterson, T. K. Rowles, J. T. Saliki, G. M. Ylitalo. In press. Ranging patterns and exposure to cumulative stressors of a common bottlenose dolphin (Tursiops truncatus) in Georgia. Southeastern Naturalist.
Bellmore, J. R., G. R. Pess, J. J. Duda, J. E. O'Connor, A. East, M. Foley, A. E. Wilcox, J. J. Major, P. B. Shafroth, S. A. Morley, C. Magirl, C. W. Anderson, J. E. Evans, C. E. Torgersen. In press. Conceptualizing ecological responses to dam removal: If you remove it, what's to come? Bioscience.
Brainard, R. E., C. Birkeland, C. M. Eakin, P. McElhany, M. Patterson, G. A. Piniak, M. Dunlap, M. Weijerman. In press. Incorporating Climate and Ocean Change into Extinction Risk Assessments for 82 Coral Species. Conservation Biology.
Breslow, S. J., A. Margaret, D. Holstein, B. Sojka, R. Barnea, X. Basurto, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, C. Hicks, A. Levine, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. In press. Evaluating Indicators of Human Wellbeing for Ecosystem-Based Management. Ecosystem Health & Sustainability, (12). doi:10.1080/20964129.2017.1411767
Breton, T. S., L. W. Kenter, K. Greenlaw, J. Montgomery, G. W. Goetz, D. L. Berlinsky, J. A. Luckenbach. In press. Initiation of sex change and gonadal gene expression in black sea bass (Centropristis striata) exposed to exemestane, an aromatase inhibitor. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology.
Brodeur, R. D., M. E. Hunsicker, A. Hann, T. W. Miller. In press. Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources. Marine Ecology Progress Series.
Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11
Faber-Hammond, J., R. B. Phillips, L. K. Park. In press. The Sockeye Salmon Neo-Y Chromosome is a Fusion between the Coho Y Chromosome and the Long Arm of Rainbow Trout Omy2. Cytogenetic and genome research, 136(1):69-74.
Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. In press. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. PLoS ONE.
Hall, J. E., C. M. Greene, O. Stefankiv, J. H. Anderson, B. Timpane-Padgham, G. R. Pess, T. J. Beechie. In press. Large river habitat complexity and productivity of Chinook salmon in Puget Sound Rivers. PLoS ONE.
Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.
Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy.
Henderson, M. J., I. S. Iglesias, C. J. Michel, A. J. Ammann, D. D. Huff. In press. A mechanistic-based model replicates spatial patterns in outmigration survival of Sacramento River Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.
Henderson M, Fiechter J, Huff DD, Wells BK. 2018. Spatial variability in ocean¿mediated growth potential is linked to Chinook salmon survival. Fisheries Oceanography 00:1¿11. https://doi.org/10.1111/fog.12415
Hess, J. E., R. D. Vetter, P. Moran. In press. A steep genetic cline in yellowtail rockfish, Sebastes flavidus, suggests regional isolation across the Cape Mendocino faunal break. Canadian Journal of Fisheries and Aquatic Sciences.
Keller, A. A., P. H. Frey, J. R. Wallace, M. A. Head, C. R. Wetzel, J. M. Cope, J. H. Harms. In press. Canary rockfishes (Sebastes pinniger) return from the brink: catch, distribution and life history along the U.S. west coast (Washington to California). Marine Ecology Progress Series.
Kiffney, P. M., N. Sean, C. Jeremy, M. Liermann, D. G. Burrows. In press. Multiple pathways of carbon and nitrogen incorporation by consumers across an experimental gradient of salmon carcass inputs. Ecosphere.
Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.
Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.
Litz, M. N., J. A. Miller, R. D. Brodeur, E. A. Daly, L. A. Weitkamp, A. G. Hansen. In press. Energy dynamics of subyearling Chinook salmon reveal the importance of piscivory to short term growth during early marine residence. Fisheries Oceanography.
Lundin, J. I., G. M. Ylitalo, D. A. Giles, E. A. Seely, B. F. Anulacion, D. Boyd, J. Hempelmann, K. M. Parsons, R. K. Booth, S. K. Wasser. In press. Pre-oil spill baseline profiling for contaminants in Southern Resident killer whale fecal samples indicates possible exposure to vessel exhaust. Marine Pollution Bulletin.
MacCall, A. D., T. B. Francis, D. R. Armitage, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, P. S. Levin, J. McIssac, D. K. Okamoto, M. R. Poe, A. E. Punt, S. Reifenstuhl, A. O. Shelton, J. J. Silver, T. F. Thornton, R. Voss, J. Woodruff. In press. A heuristic model of learned migration behavior exhibits distinctive spatial and reproductive dynamics. ICES Journal of Marine Science.
Marandel F, Lorance P, Berthele O, Trenkel VM, Waples RS, Lamy JB. In press. Estimating effective population size of large fish populations, is it feasible? A study case on marine fish. Fish and Fisheries
Michel, C. J., J. M. Smith, N. J. Demetras, D. D. Huff, S. A. Hayes. In press. Non-native Fish Predator Density and Molecular-based Diet Estimates Provide Direct Evidence of Predation on Juvenile Salmon in the San Joaquin River, California. San Francisco Estuary and Watershed Science.
Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.
Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003
Nogueira, A., N. Tolimieri, D. Gonzalez-Troncoso. In press. Using multivariate state-space models to examine commercial stocks p of Sebastes spp on the Flemish Cap. Canadian Journal of Fisheries and Aquatic Sciences.
Shelton, A. O., C. J. Harvey, J. F. Samhouri, K. S. Andrews, B. E. Feist, K. E. Frick, N. Tolimieri, G. Williams, L. Antrim, H. D. Berry. In press. From the predictable to the unexpected: kelp forest and benthic invertebrate community dynamics following decades of sea otter expansion. Oecologia.
Shelton, A. O., W. H. Satterthwaite, E. Ward, B. E. Feist, B. J. Burke. In press. Using hierarchical models to estimate stock-specific and seasonal variation in ocean distribution, survivorship, and aggregate abundance of fall run Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.
Sol, S. Y., A. Hanson, K. Marcoe, L. L. Johnson. In press. Juvenile salmon assemblages at the Mirror Lake Complex in the lower Columbia River before and after a culvert modification. North American Journal of Fisheries Management.
Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.
Ward, E. J., H. Delgado-Nordmann, R. Brenner, A. H. Beaudreau, S. D. Moffitt, A. O. Shelton. In press. Assessing long-term changes in sex ratios of Pacific herring in Prince William Sound. Fisheries Research.
Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.
Williamson, K. S., B. P. May. In press. Mitochondrial DNA haplotype diversity in apparent XY-female Fall- and Spring-Run Chinook Salmon in California's Central Valley. Transactions of the American Fisheries Society.