Northwest Fisheries Science Center

Publications: Journal Article

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In press

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.Go to metadata icon

Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216Go to metadata icon

Balmer, B. C., E. S. Zolman, J. L. Bolton, D. A. Fauquier, E. P. Fougères, R. C. George, T. Goldstein, M. Gowen, T. Kolkmeyer, C. Le-Bert, B. Mase, T. Norton, J. Peterson, T. K. Rowles, J. T. Saliki, G. M. Ylitalo. In press. Ranging patterns and exposure to cumulative stressors of a Tursiops truncatus (common bottlenose dolphin) in Georgia. Southeastern Naturalist, 18.Go to metadata icon

Barth, J. A., S. Allen, E. Dever, R. Dewey, W. Evans, R. A. Feely, J. L. Fisher, J. Fram, B. Hales, D. Ianson, J. Jackson, K. Juniper, O. Kawka, D. Kelley, J. Klymak, J. Konovsky, P. M. Kosro, A. Kurapov, E. Mayorga, P. MacCready, J. Newton, R. I. Perry, C. Risien, M. Robert, T. Ross, R. Shearman, J. D. Schumacher, S. A. Siedlecki, V. L. Trainer, S. Waterman, C. Wingard. In press. Better regional ocean observing through cross-national cooperation: A case study from the northeast Pacific. Frontiers in Marine Science.Go to metadata icon

Beaudreau, A. H., E. J. Ward, R. Brenner, A. O. Shelton, J. C. Shriver, J. Watson, S. C. Anderson, A. C. Haynie, K. N. Marshall. In press. Thirty years of change and the future of Alaskan fisheries: Shifts in fishing participation and diversification in response to environmental, regulatory, and economic pressures. Fish and Fisheries.Go to metadata icon

Brainard, R. E., C. Birkeland, C. M. Eakin, P. McElhany, M. Patterson, G. A. Piniak, M. Dunlap, M. Weijerman. In press. Incorporating Climate and Ocean Change into Extinction Risk Assessments for 82 Coral Species. Conservation Biology.Go to metadata icon

Breton, T. S., L. W. Kenter, K. Greenlaw, J. Montgomery, G. W. Goetz, D. L. Berlinsky, J. A. Luckenbach. In press. Initiation of sex change and gonadal gene expression in black sea bass (Centropristis striata) exposed to exemestane, an aromatase inhibitor. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology, 228:51-61. doi:https://doi.org/10.1016/j.cbpa.2018.10.024Go to metadata icon

Campbell, M. A., M. Hale, G. McKinney, K. M. Nichols, D. E. Pearse. In press. Long term conservation of ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae. Genes, Genomes, Genetics.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Chittaro, P. M., J. Hegg, B. P. Kennedy, L. A. Weitkamp, L. L. Johnson, C. Bucher, R. W. Zabel. In press. Juvenile river residence and performance of Snake River fall Chinook salmon. Ecology of Freshwater Fish.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Elias, A., F. P. Thrower, K. M. Nichols. In press. Rainbow trout personality: individual behavioral variation in juvenile Oncorhynchus mykiss. Behaviour.Go to metadata icon

Evans, M. L., J. J. Hard, A. N. Black, N. M. Sard, K. G. O'Malley. In press. A quantitative genetic analysis of life-history traits and lifetime reproductive success in reintroduced Chinook salmon. Conservation Genetics.Go to metadata icon

Faber-Hammond, J., R. B. Phillips, L. K. Park. In press. The Sockeye Salmon Neo-Y Chromosome is a Fusion between the Coho Y Chromosome and the Long Arm of Rainbow Trout Omy2. Cytogenetic and genome research, 136(1):69-74.Go to metadata icon

Fields, S., S. Henkel, G. C. Roegner. In press. Video sleds effectively survey epibenthic communities at dredged material disposal sites. Environmental Monitoring and Assessment.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy, 90. doi:https://doi.org/10.1016/j.marpol.2018.01.023Go to metadata icon

Hess, J. E., R. D. Vetter, P. Moran. In press. A steep genetic cline in yellowtail rockfish, Sebastes flavidus, suggests regional isolation across the Cape Mendocino faunal break. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Huynh, T. B., W. T. Fairgrieve, E. S. Hayman, J. S. Lee, J. A. Luckenbach. In press. Inhibition of ovarian development and instances of sex reversal in genotypic female sablefish (Anoplopoma fimbria) exposed to elevated water temperature. General and Comparative Endocrinology.Go to metadata icon

Kitada S, K Nakajima, K Hamasaki, H Shishidou, RS Waples, and H Kishino.  In press.  Spawning habitat rehabilitation outperforms hatcheries in the long run.  Scientific Reports.Go to metadata icon

Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

MacCall, A. D., T. B. Francis, D. R. Armitage, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, P. S. Levin, J. McIssac, D. K. Okamoto, M. R. Poe, A. E. Punt, S. Reifenstuhl, A. O. Shelton, J. J. Silver, T. F. Thornton, R. Voss, J. Woodruff. In press. A heuristic model of learned migration behavior exhibits distinctive spatial and reproductive dynamics. ICES Journal of Marine Science. doi:https://doi.org/10.1093/icesjms/fsy091Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Nilsson, W. B., R. N. Paranjpye, O. S. Hamel, C. Hard, M. S. Strom. In press. Vibrio parahaemolyticus risk assessment in the Pacific Northwest: It's NOT what's in the water. FEMS Microbiology Ecology.Go to metadata icon

Phillips, E. M., J. K. Horne, J. E. Zamon, J. Felis, J. Adams. In press. Does perspective matter? Comparing Eulerian and Lagrangian estimates of seabird distributions. Ecology and Evolution.Go to metadata icon

Punt, A. E., J. M. Cope. In press. Extending Integrated Stock Assessments Models to Use Non-Depensatory Three-Parameter Stock-Recruitment Relationships. Fisheries Research.Go to metadata icon

Smits, A. P., C. M. Ruffing, T. V. Royer, A. P. Appling, N. A. Griffiths, R. Bellmore, M. D. Scheuerell, T. K. Harms, J. Jones. In press. Detecting signals of large-scale climate phenomena on river flows and nitrogen, phosphorus, and silica loads in the Mississippi-Atchafalaya River Basin. Geophysical Research Letters.Go to metadata icon

Stawitz, C. C., T. E. Essington, T. A. Branch, M. A. Haltuch, A. Hollowed, N. Mantua, P. Spencer. In press. A state-space approach for detecting growth variation and application to North Pacific groundfish. Fisheries Research.Go to metadata icon

Stock, B., E. J. Ward, T. Eguchi, J. E. Jannot, J. T. Thorson, B. E. Feist, B. X. Semmens. In press. Comparing predictions of fisheries bycatch using multiple spatiotemporal species distribution model frameworks. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon

Williamson, K. S., B. P. May. In press. Mitochondrial DNA haplotype diversity in apparent XY-female Fall- and Spring-Run Chinook Salmon in California's Central Valley. Transactions of the American Fisheries Society.Go to metadata icon

Yang, L, ML Baskett, and RS Waples.  In press.  Life history and temporal variability of escape events interactively determine the fitness consequences of aquaculture escapees on wild populations.  Journal of Theoretical Biology.Go to metadata icon