Northwest Fisheries Science Center

Publications: Journal Article

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In press

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. P. Dietrich, M. Rew, W. Olson, G. Young, F. W. Goetz. In press. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research.Go to metadata icon

Barceló, C., L. Ciannelli, R. D. Brodeur. In press. Pelagic marine refugia and climatically sensitive areas in an eastern boundary current upwelling system. Global Change Biology.Go to metadata icon

Brainard, R. E., C. Birkeland, C. M. Eakin, P. McElhany, M. Patterson, G. A. Piniak, M. Dunlap, M. Weijerman. In press. Incorporating Climate and Ocean Change into Extinction Risk Assessments for 82 Coral Species. Conservation Biology.Go to metadata icon

Charnley, S., C. Carothers, T. Satterfield, A. Levine, M. R. Poe, K. C. Norman, J. Donatuto, M. B. Mascia, S. J. Breslow, X. Basurto, C. Hicks, C. Garcia-Quijano, K. St. Martin, A. Agrawal, N. Dolsak, P. S. Levin. In press. Evaluating the Best Available Social Science for Natural Resource Management Decision-making. Environmental Science & Policy.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Faber-Hammond, J., R. B. Phillips, L. K. Park. In press. The Sockeye Salmon Neo-Y Chromosome is a Fusion between the Coho Y Chromosome and the Long Arm of Rainbow Trout Omy2. Cytogenetic and genome research, 136(1):69-74.Go to metadata icon

Farmer, N. A., D. P. Noren, E. P. Fougères, A. Machernis, K. Baker. In press. Resilience of endangered sperm whales (Physeter macrocephalus) to foraging disturbance in the Gulf of Mexico, USA: A bioenergetics approach. Marine Ecology Progress Series.Go to metadata icon

Fullerton, A. H., B. J. Burke, J. J. Lawler, C. E. Torgersen, J. L. Ebersole, S. G. Leibowitz. In press. Simulated juvenile salmon growth and phenology respond to altered thermal regimes and stream network shape. Ecosphere.Go to metadata icon

Fullerton, A. H., C. E. Torgersen, J. J. Lawler, E. A. Steel, J. L. Ebersole, S. Y. Lee. In press. Longitudinal thermal heterogeneity in rivers and refugia for coldwater species: effects of scale and climate change. Aquatic Sciences.Go to metadata icon

Gustafson, L. L., L. H. Creekmore, K. R. Snekvik, J. A. Ferguson, J. V. Warg, M. Blair, T. R. Meyers, B. A. Stewart, K. I. Warheit, J. Kerwin, A. E. Goodwin, L. D. Rhodes, J. E. Whaley, M. K. Purcell, C. Bentz, D. Shasa, J. Bader, J. R. Winton. In press. A systematic surveillance program for infectious salmon anemia virus supports its absence in the Pacific Northwest of the United States. Journal of Fish Diseases.Go to metadata icon

Hall, J. E., T. P. Khangaonkar, C. A. Rice, J. W. Chamberlin, T. Zackey, F. E. Leonetti, M. Rustay, K. L. Fresh, A. N. Kagley, M. Rowse. In press. Characterization of annual salinity and temperature patterns in a large river delta to support tidal wetland habitat restoration efforts. Northwest Science.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Hernandez-Ortz, J. S., D. I. Hernandez-Mena, G. Alama-Bermejo, R. Kutcha, K. C. Jacobson. In press. Morphological and molecular characterisation of Aporocotyle margolisi Smith, 1967 (Digenea: Aporocotylidae) from the North Pacific hake Merluccius productus (Ayres) (Gadiformes: Merlucciidae) off Oregon. Systematic Parasitology.Go to metadata icon

Hess, J. E., R. D. Vetter, P. Moran. In press. A steep genetic cline in yellowtail rockfish, Sebastes flavidus, suggests regional isolation across the Cape Mendocino faunal break. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Jackson, T. M., G. C. Roegner, K. g. OMalley. In press. Evidence for isolation by distance and inter-annual variation in genetic structure of Dungeness crab (Cancer magister) along the U.S. west coast. Molecular Ecology.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leonard, J. L., E. Steiner. In press. Initial Economic Impacts of Pacific Coast Groundfish Fishery Individual Fishing Quota Program. North American Journal of Fisheries Management, 37(4):862-881. doi:10.1080/02755947.2017.1330784Go to metadata icon

Lin, J. E., J. J. Hard, R. Hilborn, L. Hauser. In press. Modeling local adaptation and gene flow in sockeye salmon. Ecosphere.Go to metadata icon

Lomeli, M. J., W. W. Wakefield, B. Herrmann. In press. Illuminating the Headrope of a Selective Flatfish Trawl: Effect on Catches of Groundfishes Including Pacific Halibut. Marine and Coastal Fisheries.Go to metadata icon

Macqueen, D. J., C. Primmer, R. Houston, B. Nowak, L. Bernatchez, S. Bersath, W. Davidson, C. Gallardo-Escarate, T. Goldammer, Y. Guiguen, P. Iturra, J. Kijas, B. Koop, S. Lien, A. Maass, S. Martin, P. McGinnity, M. Montecino, K. Naish, K. M. Nichols, K. Olafsson, S. Omholt, Y. Palti, G. Plastow, C. Rexroad, M. Rise, S. Sandve, P. Schulte, A. Tello, R. Vidal, J. O. Vik, A. Wargelius, J. M. Yanez. In press. Functional Analysis of All Salmonid Genomes: an international initiative supporting future salmonid research, conservation, and aquaculture. BMC Genomics.Go to metadata icon

Masi, M., C. H. Ainsworth, I. C. Kaplan, M. J. Schirripa. In press. Evaluation of robust single-species harvest control rules for managing reef fish in the Gulf of Mexico. Marine and Coastal Fisheries.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Neely, M. G., J. S. Morey, P. Anderson, B. C. Balmer, G. M. Ylitalo, E. S. Zolman, T. Speakman, C. Sinclair, M. Bachman, K. Huncik, J. R. Kucklick, P. E. Rosel, K. L. Mullin, T. K. Rowles, L. H. Schwacke, F. M. Van Dolah. In press. Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the Northern Gulf of Mexico and Southeastern U.S. Atlantic Coast. Marine Genomics.Go to metadata icon

Schwenke, P. L., L. K. Park, L. Hauser. In press. Introgression among three rockfish species (Sebastes spp.) In the Salish Sea, Northeast Pacific Ocean. PLoS ONE.Go to metadata icon

Shelton, A. O., M. E. Hunsicker, E. J. Ward, B. E. Feist, R. Blake, C. L. Ward, B. Williams, J. T. Duffy-Anderson, A. Hollowed, A. C. Haynie. In press. Spatio-temporal models reveal subtle changes to demersal communities following the Exxon Valdez oil spill. ICES Journal of Marine Science.Go to metadata icon

Silber GK, M Lettrich, PO Thomas, J Baker, M Baumgartner, EA Becker, P Boveng, D Dick, J Fiechter, J Forcada, KA Forney, R Griffis, J Hare, A Hobday, D Howell, K Laidre, N Mantua, L Quakenbush, JA Santora, P Spencer, K Stafford, C Stock, W Sydeman, K Van Houtan, and RS Waples.  Projecting marine mammal distribution in a changing climate. Frontiers in Marine Science (in press).Go to metadata icon

Tolimieri, N., M. A. Haltuch, Q. X. Li, M. Jacox, S. J. Bograd. In press. Ooceanographic drivers of sablefish recruitment in the California Current. Fisheries Oceanography.Go to metadata icon


Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.Go to metadata icon

Ward, E. J., S. C. Anderson, A. O. Shelton, R. Brenner, J. Watson, J. C. Shriver, A. H. Beaudreau, A. C. Haynie, M. Adkison, B. Williams. In press. Effects of increased specialization on revenue of Alaskan salmon fishers over four decades. Journal of Applied Ecology.Go to metadata icon

West, J. E., S. M. O'Neill, G. M. Ylitalo. In press. Time trends of persistent organic pollutants in benthic and pelagic indicator fishes from Puget Sound, Washington, USA. Archives of Environmental Contamination and Toxicology.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon

Williamson, K. S., B. P. May. In press. Mitochondrial DNA haplotype diversity in apparent XY-female Fall- and Spring-Run Chinook Salmon in California's Central Valley. Transactions of the American Fisheries Society.Go to metadata icon