Northwest Fisheries Science Center

Publications: Journal Article

Click the links to go to documents. Click the green arrow Go to metadata iconto see metadata.

In press

Akada, J., B. Doll, B. L. Adams. In press. test test. Abstracts of the American Oil Chemists Society.Go to metadata icon

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Andrews, K. S., K. M. Nichols, A. Elz, N. Tolimieri, C. J. Harvey, R. Pacunski, D. Lowry, K. L. Yamanaka, D. M. Tonnes. In press. Cooperative research sheds light on the listing status of threatened and endangered rockfish species. Conservation Genetics.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. P. Dietrich, M. Rew, W. Olson, G. Young, F. W. Goetz. In press. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research.Go to metadata icon

Brainard, R. E., C. Birkeland, C. M. Eakin, P. McElhany, M. Patterson, G. A. Piniak, M. Dunlap, M. Weijerman. In press. Incorporating Climate and Ocean Change into Extinction Risk Assessments for 82 Coral Species. Conservation Biology.Go to metadata icon

Breslow, S. J., A. Margaret, D. Holstein, B. Sojka, R. Barnea, X. Basurto, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, C. Hicks, A. Levine, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. In press. Evaluating Indicators of Human Wellbeing for Ecosystem-Based Management. Ecosystem Health & Sustainability, (12). doi:10.1080/20964129.2017.1411767Go to metadata icon

Brodeur, R. D., M. E. Hunsicker, A. Hann, T. W. Miller. In press. Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources. Marine Ecology Progress Series.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Chittaro, P. M., L. L. Johnson, D. J. Teel, P. Moran, S. Y. Sol, K. H. Macneale, R. W. Zabel. In press. Variability in the performance of juvenile Chinook salmon is explained primarily by when and where they resided in estuarine habitats. Ecology of Freshwater Fish.Go to metadata icon

Cruz-Acevedo, E., N. Tolimieri, H. Aguirre-Villaseñor. In press. Deep-sea fish assemblages (300-2100 m) in the Eastern Pacific off Northern Mexico. Marine Ecology Progress Series. doi: to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Elias, A., F. P. Thrower, K. M. Nichols. In press. Rainbow trout personality: individual behavioral variation in juvenile Oncorhynchus mykiss. Behaviour.Go to metadata icon

Emmons, C. K., J. J. Hard, M. E. Dahlheim, J. Waite. In press. Quantifying variation in killer whale (Orcinus orca) morphology using elliptical Fourier analysis. Marine Mammal Science.Go to metadata icon

Faber-Hammond, J., R. B. Phillips, L. K. Park. In press. The Sockeye Salmon Neo-Y Chromosome is a Fusion between the Coho Y Chromosome and the Long Arm of Rainbow Trout Omy2. Cytogenetic and genome research, 136(1):69-74.Go to metadata icon

Fonner, Robert, and Alok K. Bohara. "Optimal Control of Wild Horse Populations with Nonlethal Methods." Land Economics 93, no. 3 (2017): 390-412, doi:10.3368/le.93.3.390Go to metadata icon

Ford, M. J., K. M. Parsons, E. J. Ward, J. Hempelmann, C. K. Emmons, M. B. Hanson, K. C. Balcomb, L. K. Park. In press. Inbreeding in an endangered killer whale population. Animal Conservation.Go to metadata icon

Guzman, J. M., J. A. Luckenbach, D. A. da Silva, E. S. Hayman, G. M. Ylitalo, F. W. Goetz, P. Swanson. In press. Seasonal variation of pituitary gonadotropin subunit, brain-type aromatase and sex steroid receptor mRNAs, and plasma steroids during gametogenesis in wild sablefish. Comparative Biochemistry and Physiology Part A: Physiology.Go to metadata icon

Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. In press. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. PLoS ONE.Go to metadata icon

Hall, J. E., T. P. Khangaonkar, C. A. Rice, J. W. Chamberlin, T. Zackey, F. E. Leonetti, M. Rustay, K. L. Fresh, A. N. Kagley, M. Rowse. In press. Characterization of annual salinity and temperature patterns in a large river delta to support tidal wetland habitat restoration efforts. Northwest Science.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy.Go to metadata icon

Heery, E., A. Y. Green, B. E. Feist, K. P. Sebens. In press. Urbanization-related distribution patterns and habitat-use by giant Pacific octopus (Entroctopus dofleini). Urban Ecosystems. doi:10.1007/s11252-018-0742-1Go to metadata icon

Hernandez-Ortz, J. S., D. I. Hernandez-Mena, G. Alama-Bermejo, R. Kutcha, K. C. Jacobson. In press. Morphological and molecular characterisation of Aporocotyle margolisi Smith, 1967 (Digenea: Aporocotylidae) from the North Pacific hake Merluccius productus (Ayres) (Gadiformes: Merlucciidae) off Oregon. Systematic Parasitology.Go to metadata icon

Hess, J. E., R. D. Vetter, P. Moran. In press. A steep genetic cline in yellowtail rockfish, Sebastes flavidus, suggests regional isolation across the Cape Mendocino faunal break. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Holland, D.S. 2018. Collective Rights-Based Fishery Management (CRBFM) ¿ A Path to Ecosystem-Based Fishery Management. Annual Review of Resource Economics, Forthcoming.Go to metadata icon

Jackson, T. M., G. C. Roegner, K. g. OMalley. In press. Evidence for isolation by distance and inter-annual variation in genetic structure of Dungeness crab (Cancer magister) along the U.S. west coast. Molecular Ecology. doi:doi: 10.1111/mec.14443Go to metadata icon

Kaplan, I. C., T. B. Francis, A. E. Punt, L. E. Koehn, E. N. Curchitser, F. Hurtado-Ferro, K. F. Johnson, S. Lluch-Cota, W. J. Sydeman, T. E. Essington, N. G. Taylor, K. K. Holsman, A. D. MacCall, P. S. Levin. In press. A multi-model approach to understanding the role of Pacific sardine in the California Current food web. Marine Ecology Progress Series.Go to metadata icon

Kiffney, P. M., N. Sean, C. Jeremy, M. Liermann, D. G. Burrows. In press. Multiple pathways of carbon and nitrogen incorporation by consumers across an experimental gradient of salmon carcass inputs. Ecosphere.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leonard, J. L., E. Steiner. In press. Initial Economic Impacts of Pacific Coast Groundfish Fishery Individual Fishing Quota Program. North American Journal of Fisheries Management, 37(4):862-881. doi:10.1080/02755947.2017.1330784Go to metadata icon

Levin, P. S., T. E. Essington, K. N. Marshall, L. E. Koehn, L. Anderson, A. Bundy, C. Carothers, F. Coleman, L. R. Gerber, J. H. Grabowski, E. Houde, O. Jensen, C. Möllmann, K. A. Rose, J. N. Sanchirico, A. D. Smith. In press. Building effective Fishery Ecosystem Plans. Marine Policy.Go to metadata icon

Lomeli, M. J., W. W. Wakefield, B. Herrmann. In press. Illuminating the Headrope of a Selective Flatfish Trawl: Effect on Catches of Groundfishes Including Pacific Halibut. Marine and Coastal Fisheries.Go to metadata icon

Masi, M., C. H. Ainsworth, I. C. Kaplan, M. J. Schirripa. In press. Evaluation of robust single-species harvest control rules for managing reef fish in the Gulf of Mexico. Marine and Coastal Fisheries.Go to metadata icon

Milligan BG, FI Archer, A-L Ferchaud, BK Hand, EM Kierepka, and RS Waples.  (in press) Disentangling genetic structure for genetic monitoring of complex populations.  Evolutionary Applications.Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Neely, M. G., J. S. Morey, P. Anderson, B. C. Balmer, G. M. Ylitalo, E. S. Zolman, T. Speakman, C. Sinclair, M. Bachman, K. Huncik, J. R. Kucklick, P. E. Rosel, K. L. Mullin, T. K. Rowles, L. H. Schwacke, F. M. Van Dolah. In press. Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the Northern Gulf of Mexico and Southeastern U.S. Atlantic Coast. Marine Genomics.Go to metadata icon

Olsen, E., I. C. Kaplan, C. H. Ainsworth, G. Fay, S. K. Gaichas, R. J. Gamble, R. Girardin, H. N. Morzaria Luna, C. Hansen, K. Johnson, M. Savina-Rolland, H. M. Townsend, M. Weijerman, E. A. Fulton, J. S. Link. In press. Ocean futures as explored using a worldwide suite of ecosystem models. Frontiers in Marine Science.Go to metadata icon

Richerson, K., J. L. Leonard, D. S. Holland. In press. Predicting the economic impacts of the 2017 West Coast salmon troll ocean fishery closure. Marine Policy.Go to metadata icon

Sato, M., J. A. Barth, K. J. Benoit-Bird, S. D. Pierce, T. J. Cowles, R. D. Brodeur, W. T. Peterson. In press. Upwelling front as a boundary for planktivorous fish distributions. Marine Ecology Progress Series.Go to metadata icon

Saunders, W. C., N. Bouwes, P. A. McHugh, C. E. Jordan. In press. A network model for primary production highlights linkages between riverine fish populations and autochthonous resources. Ecosphere.Go to metadata icon

Schwenke, P. L., L. K. Park, L. Hauser. In press. Introgression among three rockfish species (Sebastes spp.) In the Salish Sea, Northeast Pacific Ocean. PLoS ONE.Go to metadata icon

Seixas, G. B., T. J. Beechie, C. Fogel, P. M. Kiffney. In press. Influence of channel width on stream shade and temperature change in a forested catchment. Journal of American Water Resources Association.Go to metadata icon

Thom, R. M., S. A. Breithaupt, H. L. Diefenderfer, A. Borde, G. C. Roegner, G. Johnson, D. L. Woodruff. In press. Storm-Driven Particulate Organic Matter Flux Connects a Tidal Tributary Floodplain Wetland, Main Stem River, and Estuary. Ecological Applications.Go to metadata icon

Tolimieri, N., M. A. Haltuch, Q. Lee, M. Jacox, S. J. Bograd. In press. Ooceanographic drivers of sablefish recruitment in the California Current. Fisheries Oceanography.Go to metadata icon

Waples, RS.  2018.  Null alleles and FIS×FST correlations.  J. Heredity (in press).Go to metadata icon

Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon

Williamson, K. S., B. P. May. In press. Mitochondrial DNA haplotype diversity in apparent XY-female Fall- and Spring-Run Chinook Salmon in California's Central Valley. Transactions of the American Fisheries Society.Go to metadata icon