Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216Go to metadata icon

Balmer, B. C., G. M. Ylitalo, S. Watwood, B. M. Quigley, J. L. Bolton, K. L. Mullin, P. E. Rosel, T. K. Rowles, T. Speakman, E. S. Zolman, L. H. Schwacke. In press. Comparison of persistent organic pollutants (POPs) between small cetaceans in coastal and estuarine waters of the northern Gulf of Mexico. Marine Pollution Bulletin.Go to metadata icon

Balmer, B. C., E. S. Zolman, J. L. Bolton, D. A. Fauquier, E. P. Fougères, R. C. George, T. Goldstein, M. Gowen, T. Kolkmeyer, C. Le-Bert, B. Mase, T. Norton, J. Peterson, T. K. Rowles, J. T. Saliki, G. M. Ylitalo. In press. Ranging patterns and exposure to cumulative stressors of a Tursiops truncatus (common bottlenose dolphin) in Georgia. Southeastern Naturalist, 18.Go to metadata icon

Bellanger, M., D.S. Holland, C.M. Anderson, O. Guyader, and C. Macher. Incentive effect of joint and several liability in fishery cooperatives on regulatory compliance. Fisher and Fisheries.Go to metadata icon

Campbell, M. A., M. Hale, G. McKinney, K. M. Nichols, D. E. Pearse. In press. Long term conservation of ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae. Genes, Genomes, Genetics.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Chittaro, P. M., J. Hegg, B. P. Kennedy, L. A. Weitkamp, L. L. Johnson, C. Bucher, R. W. Zabel. In press. Juvenile river residence and performance of Snake River fall Chinook salmon. Ecology of Freshwater Fish.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Elias, A., F. P. Thrower, K. M. Nichols. In press. Rainbow trout personality: individual behavioral variation in juvenile Oncorhynchus mykiss. Behaviour.Go to metadata icon

Fields, S., S. Henkel, G. C. Roegner. In press. Video sleds effectively survey epibenthic communities at dredged material disposal sites. Environmental Monitoring and Assessment.Go to metadata icon

Gavery, M., K. M. Nichols, B. A. Berejikian, C. P. Tatara, G. W. Goetz, J. T. Dickey, D. M. Van Doornik, P. Swanson. In press. Temporal dynamics of DNA methylation patterns in response to rearing juvenile steelhead (Oncorhynchus mykiss) in a hatchery versus simulated stream environment. Genes.Go to metadata icon

Gonzalez, S., J. K. Horne, E. J. Ward. In press. Temporal variability in pelagic biomass distributions at wave and tidal sites and implications for standardization of biological monitoring. International Marine Energy Journal.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy, 90. doi: to metadata icon

Holland, D.S., J. Abbott, and K. Norman. Fishing to Live or Living to Fish: Job Satisfaction and Identity of West Coast Fishermen. Ecological Economics.Go to metadata icon

Huynh, T. B., W. T. Fairgrieve, E. S. Hayman, J. S. Lee, J. A. Luckenbach. In press. Inhibition of ovarian development and instances of sex reversal in genotypic female sablefish (Anoplopoma fimbria) exposed to elevated water temperature. General and Comparative Endocrinology.Go to metadata icon

  Kuriyama, P.T,,  D.S. Holland, T.A. Branch, L.A.K. Barnett, R.L. Hicks, K.E. Schnier. Catch shares drive fleet consolidation and increased targeting but not spatial effort concentration nor changes in location choice in a multispecies trawl fishery. Forthcoming Canadian Journal of Fisheries and Aquatic SciencesGo to metadata icon

Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment.Go to metadata icon

MacCall, A. D., T. B. Francis, D. R. Armitage, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, P. S. Levin, J. McIssac, D. K. Okamoto, M. R. Poe, A. E. Punt, S. Reifenstuhl, A. O. Shelton, J. J. Silver, T. F. Thornton, R. Voss, J. Woodruff. In press. A heuristic model of learned migration behavior exhibits distinctive spatial and reproductive dynamics. ICES Journal of Marine Science. doi: to metadata icon

Morgan, C. A., B. R. Beckman, L. A. Weitkamp, K. L. Fresh. In press. Recent Ecosystem Disturbance in the Northern California Current. Fisheries.Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Phillips, E. M., J. K. Horne, J. E. Zamon, J. Felis, J. Adams. In press. Does perspective matter? Comparing Eulerian and Lagrangian estimates of seabird distributions. Ecology and Evolution.Go to metadata icon

Punt, A. E., J. M. Cope. In press. Extending Integrated Stock Assessments Models to Use Non-Depensatory Three-Parameter Stock-Recruitment Relationships. Fisheries Research.Go to metadata icon

Smits, A. P., C. M. Ruffing, T. V. Royer, A. P. Appling, N. A. Griffiths, R. Bellmore, M. D. Scheuerell, T. K. Harms, J. Jones. In press. Detecting signals of large-scale climate phenomena on river flows and nitrogen, phosphorus, and silica loads in the Mississippi-Atchafalaya River Basin. Geophysical Research Letters.Go to metadata icon

Stawitz, C. C., T. E. Essington, T. A. Branch, M. A. Haltuch, A. Hollowed, N. Mantua, P. Spencer. In press. A state-space approach for detecting growth variation and application to North Pacific groundfish. Fisheries Research.Go to metadata icon

Stock, B., E. J. Ward, T. Eguchi, J. E. Jannot, J. T. Thorson, B. E. Feist, B. X. Semmens. In press. Comparing predictions of fisheries bycatch using multiple spatiotemporal species distribution model frameworks. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Van Doornik, D. M., D. R. Kuligowski, C. A. Morgan, C. A. Morgan, B. J. Burke, T. R. Seamons. In press. Insights, from genetic analyses, into stock-specific distribution of juvenile steelhead (Oncorhynchus mykiss) from the Columbia River during early marine migration. Fishery Bulletin.Go to metadata icon

Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon


Anderson, K., J. A. Luckenbach, Y. Yamamoto, A. Elizur. 2019. Impacts of Fsh, Igf, and high temperature on the expression of genes involved in steroidogenesis, cell communication, and apoptosis in isolated coho salmon ovarian follicles. Aquaculture, 506:60-69. doi: to metadata icon

Axel, G. A., G. T. Brooks. 2019. DRAFT: New marking and monitoring technologies for the passive integrated transponder. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.Go to metadata icon

Barth, J. A., S. Allen, E. Dever, R. Dewey, W. Evans, R. A. Feely, J. L. Fisher, J. Fram, B. Hales, D. Ianson, J. Jackson, K. Juniper, O. Kawka, D. Kelley, J. Klymak, J. Konovsky, P. M. Kosro, A. Kurapov, E. Mayorga, P. MacCready, J. Newton, R. I. Perry, C. Risien, M. Robert, T. Ross, R. Shearman, J. D. Schumacher, S. A. Siedlecki, V. L. Trainer, S. Waterman, C. Wingard. 2019. Better regional ocean observing through cross-national cooperation: A case study from the northeast Pacific. Frontiers in Marine Science.Go to metadata icon

Beaudreau, A. H., E. J. Ward, R. Brenner, A. O. Shelton, J. C. Shriver, J. Watson, S. C. Anderson, A. C. Haynie, K. N. Marshall. 2019. Thirty years of change and the future of Alaskan fisheries: Shifts in fishing participation and diversification in response to environmental, regulatory, and economic pressures. Fish and Fisheries.Go to metadata icon

Evans, M. L., J. J. Hard, A. N. Black, N. M. Sard, K. G. O'Malley. 2019. A quantitative genetic analysis of life-history traits and lifetime reproductive success in reintroduced Chinook salmon. Conservation Genetics. doi: to metadata icon

Frick, K. E., S. C. Corbett, G. T. Brooks. 2019. Development and evaluation of a wetted wall for adult lamprey passage at the Bradford Island Fishway, 2017-2018. Report of the National Marine Fisheries Service to the U.S. Army Corps of Engineers. Portland, Oregon.Go to metadata icon

Galligan, T. M., B. C. Balmer, L. H. Schwacke, J. L. Bolton, B. M. Quigley, P. E. Rosel, G. M. Ylitalo, A. S. Boggs. 2019. Examining the Relationships Between Blubber Steroid Hormone and Persistent Organic Pollutant Measurements in Common Bottlenose Dolphins. Environmental Pollution, 249:982-991.Go to metadata icon

Honeycutt, J. L., C. A. Deck, S. C. Miller, M. E. Severance, E. B. Atkins, J. A. Luckenbach, J. A. Buckel, H. V. Daniels, J. A. Rice, R. J. Borski, J. Godwin. 2019. Warmer waters masculinize wild populations of a fish with temperature-dependent sex determination. Scientific Reports, 9:6527. doi: to metadata icon

Johnson, K. F., J. T. Thorson, A. E. Punt. 2019. Investigating the value of including depth during spatiotemporal index standardization. Fisheries Research, 216:12-137. doi:10.1016/j.fishres.2019.04.004Go to metadata icon

Lamb, J. J., B. P. Sandford, G. A. Axel, S. G. Smith, M. G. Nesbit, B. L. Sanderson. 2019. Monitoring the migrations of wild Snake River spring/summer Chinook salmon juveniles: survival and timing, 2018. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.Go to metadata icon

Larsen DA, Harstad DL, Fuhrman AE, Knudsen CM, Schroder SL, Bosch WJ, et al. (2019) Maintaining a wild phenotype in a conservation hatchery program for Chinook salmon: The effect of managed breeding on early male maturation. PLoS ONE 14(5): e0216168. to metadata icon

Moran, BM, K Hench, RS Waples, MC Höppner, CC Baldwin, O McMillan, O Puebla.  2019.  The evolution of microendemism in a reef fish (Hypoplectrus maya).  Molecular Ecology (published online 24 April 2019; to metadata icon

Moser, M. L., J. Hume, K. Aronsuu, R. Lampman, A. D. Jackson. 2019. Lamprey Reproduction and Early Life History: Insights from Artificial Propagation. In Docker, M. F. (Ed.) Biology of Lampreys Volume 2. Springer.Go to metadata icon

Moser, M. L., S. C. Corbett, M. L. Keefer, K. E. Frick, S. Lopez-Johnston, C. C. Caudill. 2019. Novel Fishway Entrance Modifications to Improve Passage for Pacific Lamprey. Journal of Ecohydraulics.Go to metadata icon

Moser, M. L., M. L. Keefer, S. C. Corbett, K. E. Frick, C. C. Caudill, S. Tackley. 2019. Providing refuges for adult Pacific lamprey Entosphenus tridentatus inside fishways. Aquaculture and Fisheries.Go to metadata icon