Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216Go to metadata icon

Bosley, K. L., K. M. Bosley, A. A. Keller, C. Whitmire. In press. Relating groundfish diversity and biomass to deep-sea corals and sponges using trawl survey catch data. Marine Ecology Progress Series. doi: to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Cope, J. M., V. V. Gertseva. In press. A new way to visualize and report structural and data uncertainty in stock assessments. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Dai, X., B. D. Bill, N. G. Adams, U. Tillmann, C. A. Sloan, D. Lu, V. L. Trainer. In press. The effect of temperature and salinity on growth rate and azaspiracid concentration in two strains of Azadinium poporum (Dinophyceae) from Puget Sound, Washington State. Harmful Algae.Go to metadata icon

Doney, S. C., S. Busch, S. Cooley, K. Kroeker. In press. The Impacts of Ocean Acidification on Marine Ecosystems and Reliant Human Communities. Annual Review of Environment and Resources.Go to metadata icon

Doo, S., A. Kealoha, A. Andersson, A. Cohen, T. Hicks, Z. Johnson, M. Long, P. McElhany, N. Mollica, K. Shamberger, N. Silbiger, Y. Takeshita, S. Busch. In press. The challenges of detecting and attributing ocean acidification impacts on marine ecosystems. ICES Journal of Marine Science.Go to metadata icon

Gao, J., J. T. Thorson, C. Szuwalski, H. Wang. In press. Historical dynamics of the demersal fish community in the East and South China Seas. PLoS ONE.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Harvey, C. J., J. L. Fisher, J. F. Samhouri, G. D. Williams, T. B. Francis, K. C. Jacobson, Y. L. deReynier, M. E. Hunsicker, N. Garfield. In press. The importance of long-term ecological time series for integrated ecosystem assessment and ecosystem-based management. Progress in Oceanography.Go to metadata icon

Hawkins, B. L., A. H. Fullerton, B. L. Sanderson, E. A. Steel. In press. Individual-based simulations suggest mixed impacts of warmer temperatures and a non-native predator on Chinook salmon. Ecosphere.Go to metadata icon

Hodgson, E. E., R. A. Hovel, E. J. Ward, S. Lord, J. W. Moore. In press. Migratory diversity of a culturally-important food fish in a changing Arctic watershed. Biological Conservation.Go to metadata icon

Huggins, J. L., M. M. Garner, S. A. Raverty, D. M. Lambourn, S. A. Norman, L. D. Rhodes, J. K. Gaydos, J. K. Olson, M. Haulena, M. B. Hanson. In press. The emergence of mucormycosis in free-ranging marine mammals of the Pacific Northwest. Frontiers in Marine Science.Go to metadata icon

Keogh, M. J., B. Taras, K. B. Beckmen, K. A. Burek-Huntington, G. M. Ylitalo, B. S. Fadely, L. Rea, K. W. Pitcher. In press. Organochlorine contaminant concentrations in blubber of young Steller sea lion (Eumetopias jubatus) are influenced by region, age, sex, and lipid stores. Science of the Total Environment.Go to metadata icon

Laetz, C.A., Baldwin, D.H., and Scholz, N.L. 2020. Sublethal neurotoxicity of organophosphate insecticides to juvenile coho salmon. Aquatic Toxicology, 221:10524.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment.Go to metadata icon

Litzow, M. A., M. E. Hunsicker, E. J. Ward, S. C. Anderson, J. Gao, S. McClatchie, S. Zador, S. Batten, S. C. Dressel, J. T. Duffy-Anderson, E. Ferguson, R. Hopcroft, B. J. Laurel, R. O'Malley. In press. Evaluating ecosystem change as Gulf of Alaska temperature exceeds the limits of preindustrial variability. Progress in Oceanography.Go to metadata icon

Longo, G., L. Lam, B. Basnett, J. F. Samhouri, S. Hamilton, K. S. Andrews, G. Williams, M. M. McClure, K. M. Nichols. In press. Strong population differentiation in lingcod (Ophiodon elongatus) is driven by a small portion of the genome. Evolutionary Applications.Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Punt, A. E., J. M. Cope. In press. Extending Integrated Stock Assessments Models to Use Non-Depensatory Three-Parameter Stock-Recruitment Relationships. Fisheries Research.Go to metadata icon

Richerson, K., A. E. Punt, D. S. Holland. In press. Nearly a half century of high but sustainable exploitation in the Dungeness crab (Cancer magister) fishery. Fisheries Research. doi: to metadata icon

Sol, S. Y., D. P. Lomax, A. Hanson, C. Corbett, L. L. Johnson. In press. Fish Communities in Tidal Freshwater Wetlands in the Lower Columbia River Estuary. Northwest Science.Go to metadata icon

Swieca, K., S. Sponaugle, C. Briseño-Avena, M. Schmid, R. D. Brodeur, R. Cowen. In press. Changing with the tides: fine-scale larval fish prey availability and predation pressure near a tidally-modulated river plume. Marine Ecology Progress Series.Go to metadata icon

Thallman, H. L., E. A. Daly, R. D. Brodeur. In press. Two anomalously warm years in the northern California Current: impacts on early marine steelhead diet composition, morphology, and potential survival. Transactions of the American Fisheries Society.Go to metadata icon

Trushenski, J. T., D. A. Larsen, M. A. Middleton, M. Jakaitis, E. L. Johnson, C. C. Kozfkay, P. A. Kline. In press. Search for the Smoking Gun: Identifying and Addressing the Causes of Post-release Morbidity and Mortality of Hatchery-reared Snake River Sockeye Salmon Smolts. Transactions of the American Fisheries Society.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon

Young, E., M. Melnychuk, L. E. Anderson, R. Hilborn. In press. The importance of fishing opportunity to angler utility analysis in marine recreational fisheries. ICES Journal of Marine Science.Go to metadata icon


Anderson, L., and J. Hilger. 2020. A Discrete Choice Experiment Data Collection of U.S. West Coast Saltwater Anglers, 2017: Methodology and Response. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-155. to metadata icon

Anulacion, B.F., Ylitalo, G.M., Sol, S.Y., da Silva, D.A.M., Lomax, D.P., Johnson, L.L., 2020. Temporal trends in aluminum smelter-derived polycyclic aromatic hydrocarbons in outmigrant juvenile Chinook salmon from Kitimat, British Columbia, Canada. Mar Pollut Bull 157, 111284.Go to metadata icon

Armitage, D. R., D. K. Okamoto, J. J. Silver, T. Francis, P. S. Levin, A. E. Punt, I. P. Davies, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, A. D. MacCall, M. R. Poe, S. Reifenstuhl, A. O. Shelton, T. F. Thornton, R. Voss, J. Woodruff. 2020. Integrating governance with quantitative evaluation of resource management strategies to improve social and ecological outcomes. BioScience, 69:523-532.Go to metadata icon

Bogevik, A. S., E. S. Hayman, M. T. Bjerke, J. E. Dessen, K. A. Rorvik, J. A. Luckenbach. 2020. Phospholipid and LC-PUFA metabolism in Atlantic salmon (Salmo salar) testes during sexual maturation. PLoS ONE, 15(5):e0233322. doi:https:// to metadata icon

The next link will exit from NWFSC web site Kitts, A., Van Anrooy, R., Van Eijs, S., Pino Shibata, J., Pallalever Pérez, R., Gonçalves, A.A., Ardini, G., Liese, C., Pan, M., Steiner, E. 2020. Techno-economic performance review of selected fishing fleets in North and South America. FAO Fisheries and Aquaculture Technical Paper No. 653/2. Rome, FAO. to metadata icon

Lee, S. Y., A. H. Fullerton, N. Sun, C. E. Torgersen. 2020. Projecting spatiotemporally explicit effects of climate change on stream temperature: a model comparison and implications for coldwater fishes. Journal of Hydrology, 588:125066. doi: to metadata icon

Malick, M. J. 2020. The next link will exit from NWFSC web site Time varying relationships between ocean conditions and sockeye salmon productivity. Fisheries Oceanography, 29(3):265-275. doi: to metadata icon

Michel, C. J., M. J. Henderson, C. M. Loomis, J. M. Smith, N. J. Demetras, I. S. Iglesias, B. Lehman, D. D. Huff. 2020. The next link will exit from NWFSC web site Fish Predation on a Landscape Scale. Ecosphere, 11(6):e03168. doi: to metadata icon

Waples, R.S.  2020.  Serendipity and me.  ICES J. Mar. Sci. (published online 21 May 2020; doi:10.1093/icesjms/fsaa061.Go to metadata icon

Wells, B. K., D. D. Huff, B. J. Burke, R. D. Brodeur, J. A. Santora, J. C. Field, K. Richerson, N. J. Mantua, K. L. Fresh, M. M. McClure, W. H. Satterthwaite, F. Darby, S. J. Kim, R. W. Zabel, and S. T. Lindley. 2020. Implementing Ecosystem-Based Management Principles in the Design of a Salmon Ocean Ecology Program. Frontiers in Marine Science 7(342):1-24.Go to metadata icon

Winship, A. J., J. T. Thorson, M. E. Clarke, H. M. Coleman, B. Costa, S. E. Georgian, D. Gillett, A. Grüss, M. J. Henderson, T. F. Hourigan, D. D. Huff, N. Kreidler, J. L. Pirtle, J. V. Olson, M. Poti, C. N. Rooper, M. F. Sigler, S. Viehman, and C. E. Whitmire. 2020. Good Practices for Species Distribution Modeling of Deep-Sea Corals and Sponges for Resource Management: Data Collection, Analysis, Validation, and Communication. Frontiers in Marine Science 7(303):1-15. to metadata icon

Zabel, R. W., and C. E. Jordan, editors. 2020. Life Cycle Models of Interior Columbia River Basin Spring/Summer-run Chinook Salmon Populations. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-156. to metadata icon