Click the links to go to documents. Click the green arrow to see metadata.This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.
Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035
Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216
Balmer, B. C., E. S. Zolman, J. L. Bolton, D. A. Fauquier, E. P. Fougères, R. C. George, T. Goldstein, M. Gowen, T. Kolkmeyer, C. Le-Bert, B. Mase, T. Norton, J. Peterson, T. K. Rowles, J. T. Saliki, G. M. Ylitalo. In press. Ranging patterns and exposure to cumulative stressors of a common bottlenose dolphin (Tursiops truncatus) in Georgia. Southeastern Naturalist.
Bellmore, J. R., G. R. Pess, J. J. Duda, J. E. O'Connor, A. East, M. Foley, A. E. Wilcox, J. J. Major, P. B. Shafroth, S. A. Morley, C. Magirl, C. W. Anderson, J. E. Evans, C. E. Torgersen. In press. Conceptualizing ecological responses to dam removal: If you remove it, what's to come? Bioscience.
Breslow, S. J., A. Margaret, D. Holstein, B. Sojka, R. Barnea, X. Basurto, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, C. Hicks, A. Levine, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. In press. Evaluating Indicators of Human Wellbeing for Ecosystem-Based Management. Ecosystem Health & Sustainability, (12). doi:10.1080/20964129.2017.1411767
Breton, T. S., L. W. Kenter, K. Greenlaw, J. Montgomery, G. W. Goetz, D. L. Berlinsky, J. A. Luckenbach. In press. Initiation of sex change and gonadal gene expression in black sea bass (Centropristis striata) exposed to exemestane, an aromatase inhibitor. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology.
Brodeur, R. D., M. E. Hunsicker, A. Hann, T. W. Miller. In press. Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources. Marine Ecology Progress Series.
Chittaro, P. M., J. Hegg, B. P. Kennedy, L. A. Weitkamp, L. L. Johnson, C. Bucher, R. W. Zabel. In press. Early life history river residence and performance of Snake River fall Chinook salmon. Ecology of Freshwater Fish.
Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11
Francis, T. B., P. S. Levin, A. E. Punt, I. C. Kaplan, A. Varney, K. C. Norman. In press. Linking knowledge to action in ocean ecosystem management: The Ocean Modeling Forum. Elementa: Science of the Anthropocene.
Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. In press. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. PLoS ONE.
Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.
Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy.
Henderson, M. J., I. S. Iglesias, C. J. Michel, A. J. Ammann, D. D. Huff. In press. Estimating spatial-temporal differences in Chinook salmon outmigration survival with habitat and predation related covariates. Canadian Journal of Fisheries and Aquatic Sciences.
Kiffney, P. M., N. Sean, C. Jeremy, M. Liermann, D. G. Burrows. In press. Multiple pathways of carbon and nitrogen incorporation by consumers across an experimental gradient of salmon carcass inputs. Ecosphere.
Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.
Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.
Litz, M. N., J. A. Miller, R. D. Brodeur, E. A. Daly, L. A. Weitkamp, A. G. Hansen. In press. Energy dynamics of subyearling Chinook salmon reveal the importance of piscivory to short term growth during early marine residence. Fisheries Oceanography.
Lundin, J. I., G. M. Ylitalo, D. A. Giles, E. A. Seely, B. F. Anulacion, D. Boyd, J. Hempelmann, K. M. Parsons, R. K. Booth, S. K. Wasser. In press. Pre-oil spill baseline profiling for contaminants in Southern Resident killer whale fecal samples indicates possible exposure to vessel exhaust. Marine Pollution Bulletin.
MacCall, A. D., T. B. Francis, D. R. Armitage, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, P. S. Levin, J. McIssac, D. K. Okamoto, M. R. Poe, A. E. Punt, S. Reifenstuhl, A. O. Shelton, J. J. Silver, T. F. Thornton, R. Voss, J. Woodruff. In press. A heuristic model of learned migration behavior exhibits distinctive spatial and reproductive dynamics. ICES Journal of Marine Science.
Michel, C. J., J. M. Smith, N. J. Demetras, D. D. Huff, S. A. Hayes. In press. Non-native Fish Predator Density and Molecular-based Diet Estimates Provide Direct Evidence of Predation on Juvenile Salmon in the San Joaquin River, California. San Francisco Estuary and Watershed Science.
Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.
Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003
Shelton, A. O., C. J. Harvey, J. F. Samhouri, K. S. Andrews, B. E. Feist, K. E. Frick, N. Tolimieri, G. Williams, L. Antrim, H. D. Berry. In press. From the predictable to the unexpected: kelp forest and benthic invertebrate community dynamics following decades of sea otter expansion. Oecologia.
Shelton, A. O., W. H. Satterthwaite, E. Ward, B. E. Feist, B. J. Burke. In press. Using hierarchical models to estimate stock-specific and seasonal variation in ocean distribution, survivorship, and aggregate abundance of fall run Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.
Sol, S. Y., A. Hanson, K. Marcoe, L. L. Johnson. In press. Juvenile salmon assemblages at the Mirror Lake Complex in the lower Columbia River before and after a culvert modification. North American Journal of Fisheries Management.
Tallis, H., G. Bratman, J. F. Samhouri, J. Fargione. In press. Are California Elementary School Test Scores More Strongly Associated with Urban Trees Than Poverty? Frontiers in Environmental Psychology.
Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.
Ward, E. J., H. Delgado-Nordmann, R. Brenner, A. H. Beaudreau, S. D. Moffitt, A. O. Shelton. In press. Assessing long-term changes in sex ratios of Pacific herring in Prince William Sound. Fisheries Research.
Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.
Thorson, J. T. 2019. Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments. Fisheries Research, 210:143-161. doi:https://doi.org/10.1016/j.fishres.2018.10.013
Fonner, R., and A. Warlick. 2018. Marine Protected Resources on the U.S. West Coast: Current Management and Opportunities for Applying Economic Analysis. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-144.
Hall, J. E., C. M. Greene, O. Stefankiv, J. H. Anderson, B. Timpane-Padgham, G. R. Pess, T. J. Beechie. 2018. Large river habitat complexity and productivity of Chinook salmon in Puget Sound Rivers. PLoS ONE.
Henderson M, Fiechter J, Huff DD, Wells BK. 2018. Spatial variability in ocean-mediated growth potential is linked to Chinook salmon survival. Fish Oceanogr. 00:1-11. https://doi.org/10.1111/fog.12415
Lamb, J. J., B. P. Sandford, G. A. Axel, M. G. Nesbit, B. L. Sanderson. 2018. Monitoring the migrations of wild Snake River spring/summer Chinook salmon juveniles: fish collection and tagging, 2018. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.
Manhard, C. V., M. Adkinson, J. J. Hard, W. W. Smoker, A. J. Gharrett. 2018. Local adaptation of phenology revealed in outcrosses between spawning segments of a salmonid population. Molecular Ecology. doi:10.1111/mec.14908
Marandel F, Lorance P, Berthelé O, Trenkel VM, Waples RS, Lamy J-B. 2018. Estimating effective population size of large fish populations, is it feasible? Fish and Fisheries (published online 24 November 2018; DOI: 10.1111/faf.12338)
Marshall, K. N., L. E. Koehn, P. S. Levin, T. E. Essington, O. Jensen. 2018. Inclusion of ecosystem information in U.S. fish stock assessments suggests movement towards ecosystem-based fisheries management. ICES Journal of Marine Science. doi:https://doi.org/10.1093/icesjms/fsy152
Marshall, K. N., J. T. Duffy-Anderson, E. Ward, S. Anderson, M. E. Hunsicker, B. Williams. 2018. Long-term trends in ichthyoplankton assemblage structure, biodiversity, and community synchrony in the Gulf of Alaska and their relationships to ocean conditions. Progress in Oceanography.