Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. P. Dietrich, M. Rew, W. Olson, G. Young, F. W. Goetz. In press. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research.Go to metadata icon

Barceló, C., L. Ciannelli, R. D. Brodeur. In press. Pelagic marine refugia and climatically sensitive areas in an eastern boundary current upwelling system. Global Change Biology.Go to metadata icon

Charnley, S., C. Carothers, T. Satterfield, A. Levine, M. R. Poe, K. C. Norman, J. Donatuto, M. B. Mascia, S. J. Breslow, X. Basurto, C. Hicks, C. Garcia-Quijano, K. St. Martin, A. Agrawal, N. Dolsak, P. S. Levin. In press. Evaluating the Best Available Social Science for Natural Resource Management Decision-making. Environmental Science & Policy.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Fullerton, A. H., C. E. Torgersen, J. J. Lawler, E. A. Steel, J. L. Ebersole, S. Y. Lee. In press. Longitudinal thermal heterogeneity in rivers and refugia for coldwater species: effects of scale and climate change. Aquatic Sciences.Go to metadata icon

Fullerton, A. H., B. J. Burke, J. J. Lawler, C. E. Torgersen, J. L. Ebersole, S. G. Leibowitz. In press. Simulated juvenile salmon growth and phenology respond to altered thermal regimes and stream network shape. Ecosphere.Go to metadata icon

Gustafson, L. L., L. H. Creekmore, K. R. Snekvik, J. A. Ferguson, J. V. Warg, M. Blair, T. R. Meyers, B. A. Stewart, K. I. Warheit, J. Kerwin, A. E. Goodwin, L. D. Rhodes, J. E. Whaley, M. K. Purcell, C. Bentz, D. Shasa, J. Bader, J. R. Winton. In press. A systematic surveillance program for infectious salmon anemia virus supports its absence in the Pacific Northwest of the United States. Journal of Fish Diseases.Go to metadata icon

Hall, J. E., T. P. Khangaonkar, C. A. Rice, J. W. Chamberlin, T. Zackey, F. E. Leonetti, M. Rustay, K. L. Fresh, A. N. Kagley, M. Rowse. In press. Characterization of annual salinity and temperature patterns in a large river delta to support tidal wetland habitat restoration efforts. Northwest Science.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Hernandez-Ortz, J. S., D. I. Hernandez-Mena, G. Alama-Bermejo, R. Kutcha, K. C. Jacobson. In press. Morphological and molecular characterisation of Aporocotyle margolisi Smith, 1967 (Digenea: Aporocotylidae) from the North Pacific hake Merluccius productus (Ayres) (Gadiformes: Merlucciidae) off Oregon. Systematic Parasitology.Go to metadata icon

Jackson, T. M., G. C. Roegner, K. g. OMalley. In press. Evidence for isolation by distance and inter-annual variation in genetic structure of Dungeness crab (Cancer magister) along the U.S. west coast. Molecular Ecology.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leonard, J. L., E. Steiner. In press. Initial Economic Impacts of Pacific Coast Groundfish Fishery Individual Fishing Quota Program. North American Journal of Fisheries Management, 37(4):862-881. doi:10.1080/02755947.2017.1330784Go to metadata icon

Lin, J. E., J. J. Hard, R. Hilborn, L. Hauser. In press. Modeling local adaptation and gene flow in sockeye salmon. Ecosphere.Go to metadata icon

Macqueen, D. J., C. Primmer, R. Houston, B. Nowak, L. Bernatchez, S. Bersath, W. Davidson, C. Gallardo-Escarate, T. Goldammer, Y. Guiguen, P. Iturra, J. Kijas, B. Koop, S. Lien, A. Maass, S. Martin, P. McGinnity, M. Montecino, K. Naish, K. M. Nichols, K. Olafsson, S. Omholt, Y. Palti, G. Plastow, C. Rexroad, M. Rise, S. Sandve, P. Schulte, A. Tello, R. Vidal, J. O. Vik, A. Wargelius, J. M. Yanez. In press. Functional Analysis of All Salmonid Genomes: an international initiative supporting future salmonid research, conservation, and aquaculture. BMC Genomics.Go to metadata icon

Masi, M., C. H. Ainsworth, I. C. Kaplan, M. J. Schirripa. In press. Evaluation of robust single-species harvest control rules for managing reef fish in the Gulf of Mexico. Marine and Coastal Fisheries.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Neely, M. G., J. S. Morey, P. Anderson, B. C. Balmer, G. M. Ylitalo, E. S. Zolman, T. Speakman, C. Sinclair, M. Bachman, K. Huncik, J. R. Kucklick, P. E. Rosel, K. L. Mullin, T. K. Rowles, L. H. Schwacke, F. M. Van Dolah. In press. Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the Northern Gulf of Mexico and Southeastern U.S. Atlantic Coast. Marine Genomics.Go to metadata icon

Schwenke, P. L., L. K. Park, L. Hauser. In press. Introgression among three rockfish species (Sebastes spp.) In the Salish Sea, Northeast Pacific Ocean. PLoS ONE.Go to metadata icon

Shelton, A. O., M. E. Hunsicker, E. J. Ward, B. E. Feist, R. Blake, C. L. Ward, B. Williams, J. T. Duffy-Anderson, A. Hollowed, A. C. Haynie. In press. Spatio-temporal models reveal subtle changes to demersal communities following the Exxon Valdez oil spill. ICES Journal of Marine Science.Go to metadata icon

Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.Go to metadata icon

Ward, E. J., S. C. Anderson, A. O. Shelton, R. Brenner, J. Watson, J. C. Shriver, A. H. Beaudreau, A. C. Haynie, M. Adkison, B. Williams. In press. Effects of increased specialization on revenue of Alaskan salmon fishers over four decades. Journal of Applied Ecology.Go to metadata icon

West, J. E., S. M. O'Neill, G. M. Ylitalo. In press. Time trends of persistent organic pollutants in benthic and pelagic indicator fishes from Puget Sound, Washington, USA. Archives of Environmental Contamination and Toxicology.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon


Cao, J., J. T. Thorson, R. Richards, Y. Chen. 2017. Spatiotemporal index standardization improves the stock assessment of northern shrimp in the Gulf of Maine. Canadian Journal of Fisheries and Aquatic Sciences, 74(11):1781 - 1793. doi:10.1139/cjfas-2016-0137 (The next link will exit from NWFSC web site | The next link will exit from NWFSC web site)Go to metadata icon

Chasco, B., I. C. Kaplan, A. Thomas, A. Acevedo-Gutierrez, D. P. Noren, M. J. Ford, M. B. Hanson, J. Scordino, K. Marshall, A. O. Shelton, C. D. Matkin, B. J. Burke, E. J. Ward. 2017. Competing tradeoffs between increasing marine mammal predation and fisheries harvest of Chinook salmon. Scientific Reports.Go to metadata icon

Feist, B. E., E. Buhle, D. H. Baldwin, J. A. Spromberg, S. Damm, J. W. Davis, N. L. Scholz. 2017. Roads to ruin: conservation threats to a sentinel species across an urban gradient. Ecological Applications. doi:10.1002/eap.1615Go to metadata icon

Kai, M., J. T. Thorson, K. R. Piner, M. Maunder. 2017. Spatiotemporal variation in size-structured populations using fishery data: an application to shortfin mako (Isurus oxyrinchus) in the Pacific Ocean. Canadian Journal of Fisheries and Aquatic Sciences, 74(11):1765-1780. doi:10.1139/cjfas-2016-0327 (The next link will exit from NWFSC web site | The next link will exit from NWFSC web site)Go to metadata icon

King, J. R., G. A. McFarlane, V. V. Gertseva, J. Gasper, S. E. Matson, C. A. Tribuzio. 2017. Shark Interactions With Directed and Incidental Fisheries in the Northeast Pacific Ocean: Historic and Current Encounters, and Challenges for Shark Conservation. Pages 9-44 in Northeast Pacific Shark Biology, Research, and Conservation. Academic Press, London, United Kingdom.Go to metadata icon

McLain, R., M. R. Poe, L. Urgenson, D. Blahna, L. Buttolph. 2017. Urban Non-Timber Forest Products Stewardship Practices Among Foragers in Seattle, Washington (USA). Urban Forestry and Urban Greening.Go to metadata icon

Noren, D. P. 2017. Marine Mammal Physiology: Requisites for Ocean Living. Edited by Michael A. Castellini and Jo-Ann Melish. Boca Raton (Florida): CRC Press. 2016. Quarterly Review of Biology.Go to metadata icon

Slater, K., G. De Piper, J. Gove, C. J. Harvey, E. L. Hazen, S. Lucey, M. Karnauskas, S. Regan, E. Siddon, E. Yasumiishi, S. Zador, P. Brady, M. Ford, R. Griffis, R. Shuford, H. M. Townsend, T. O'Brien, J. O. Peterson, J. S. Link, K. Osgood. 2017. Report of the National Ecosystem Status Report Workshop. U.S. Dept. of Commerce, NOAA Tech. Memo., NMFS-F/SPO-174, 66 p.Go to metadata icon

Thorson, J. T., R. Fonner, M. A. Haltuch, K. Ono, H. Winker. 2017. Accounting for spatiotemporal variation and fisher targeting when estimating abundance from multispecies fishery data. Canadian Journal of Fisheries and Aquatic Sciences, 74(11):1794-1807. doi:10.1139/cjfas-2015-0598 (The next link will exit from NWFSC web site | The next link will exit from NWFSC web site)Go to metadata icon

Trainer, V.L. (Ed.) 2017. Conditions Promoting Extreme Pseudo-nitzschia Events in the Eastern Pacific but not the Western Pacific. PICES Sci. Rep. No. 53, 52 pp.Go to metadata icon

H. Townsend, K. Aydin, K. Holsman, C. Harvey, I. Kaplan, E. Hazen, P. Woodworth-Jefcoats, M. Weijerman, T. Kellison, S. Gaichas, J. Link, K. Osgood, (editors). 2017. Report of the 4th National Ecosystem Modeling Workshop (NEMoW 4): Using Ecosystem Models to Evaluate Inevitable Trade-offs. U.S. Dept. of Commerce, NOAA Tech. Memo. NMFS-F/SPO-XXXGo to metadata icon