Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216Go to metadata icon

Balmer, B. C., E. S. Zolman, J. L. Bolton, D. A. Fauquier, E. P. Fougères, R. C. George, T. Goldstein, M. Gowen, T. Kolkmeyer, C. Le-Bert, B. Mase, T. Norton, J. Peterson, T. K. Rowles, J. T. Saliki, G. M. Ylitalo. In press. Ranging patterns and exposure to cumulative stressors of a common bottlenose dolphin (Tursiops truncatus) in Georgia. Southeastern Naturalist.Go to metadata icon

Bellmore, J. R., G. R. Pess, J. J. Duda, J. E. O'Connor, A. East, M. Foley, A. E. Wilcox, J. J. Major, P. B. Shafroth, S. A. Morley, C. Magirl, C. W. Anderson, J. E. Evans, C. E. Torgersen. In press. Conceptualizing ecological responses to dam removal: If you remove it, what's to come? Bioscience.Go to metadata icon

Breslow, S. J., A. Margaret, D. Holstein, B. Sojka, R. Barnea, X. Basurto, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, C. Hicks, A. Levine, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. In press. Evaluating Indicators of Human Wellbeing for Ecosystem-Based Management. Ecosystem Health & Sustainability, (12). doi:10.1080/20964129.2017.1411767Go to metadata icon

Breton, T. S., L. W. Kenter, K. Greenlaw, J. Montgomery, G. W. Goetz, D. L. Berlinsky, J. A. Luckenbach. In press. Initiation of sex change and gonadal gene expression in black sea bass (Centropristis striata) exposed to exemestane, an aromatase inhibitor. Comparative Biochemistry and Physiology, Part A: Molecular and Integrative Physiology.Go to metadata icon

Brodeur, R. D., M. E. Hunsicker, A. Hann, T. W. Miller. In press. Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources. Marine Ecology Progress Series.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Chittaro, P. M., J. Hegg, B. P. Kennedy, L. A. Weitkamp, L. L. Johnson, C. Bucher, R. W. Zabel. In press. Early life history river residence and performance of Snake River fall Chinook salmon. Ecology of Freshwater Fish.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Elias, A., F. P. Thrower, K. M. Nichols. In press. Rainbow trout personality: individual behavioral variation in juvenile Oncorhynchus mykiss. Behaviour.Go to metadata icon

Fonner, R., A. K. Bohara, S. Archambault. In press. Migration Choices during Conflict in Nepal: Pull forces and landscape interactions. International Journal of Development and Conflict.Go to metadata icon

Francis, T. B., P. S. Levin, A. E. Punt, I. C. Kaplan, A. Varney, K. C. Norman. In press. Linking knowledge to action in ocean ecosystem management: The Ocean Modeling Forum. Elementa: Science of the Anthropocene.Go to metadata icon

Fulton, E. A., A. E. Punt, C. M. Dichmont, C. J. Harvey, R. Gorton. In press. Ecosystems say good management pays off. Fish and Fisheries.Go to metadata icon

Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. In press. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. PLoS ONE.Go to metadata icon

Hampton, S. E., M. D. Scheuerell, M. J. Church, J. M. Melack. In press. Long-term perspectives in aquatic research. Limnology and Oceanography.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy.Go to metadata icon

Henderson, M. J., I. S. Iglesias, C. J. Michel, A. J. Ammann, D. D. Huff. In press. Estimating spatial-temporal differences in Chinook salmon outmigration survival with habitat and predation related covariates. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Kiffney, P. M., N. Sean, C. Jeremy, M. Liermann, D. G. Burrows. In press. Multiple pathways of carbon and nitrogen incorporation by consumers across an experimental gradient of salmon carcass inputs. Ecosphere.Go to metadata icon

Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Litz, M. N., J. A. Miller, R. D. Brodeur, E. A. Daly, L. A. Weitkamp, A. G. Hansen. In press. Energy dynamics of subyearling Chinook salmon reveal the importance of piscivory to short term growth during early marine residence. Fisheries Oceanography.Go to metadata icon

Lundin, J. I., G. M. Ylitalo, D. A. Giles, E. A. Seely, B. F. Anulacion, D. Boyd, J. Hempelmann, K. M. Parsons, R. K. Booth, S. K. Wasser. In press. Pre-oil spill baseline profiling for contaminants in Southern Resident killer whale fecal samples indicates possible exposure to vessel exhaust. Marine Pollution Bulletin.Go to metadata icon

MacCall, A. D., T. B. Francis, D. R. Armitage, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, P. S. Levin, J. McIssac, D. K. Okamoto, M. R. Poe, A. E. Punt, S. Reifenstuhl, A. O. Shelton, J. J. Silver, T. F. Thornton, R. Voss, J. Woodruff. In press. A heuristic model of learned migration behavior exhibits distinctive spatial and reproductive dynamics. ICES Journal of Marine Science.Go to metadata icon

Michel, C. J., J. M. Smith, N. J. Demetras, D. D. Huff, S. A. Hayes. In press. Non-native Fish Predator Density and Molecular-based Diet Estimates Provide Direct Evidence of Predation on Juvenile Salmon in the San Joaquin River, California. San Francisco Estuary and Watershed Science.Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Shelton, A. O., C. J. Harvey, J. F. Samhouri, K. S. Andrews, B. E. Feist, K. E. Frick, N. Tolimieri, G. Williams, L. Antrim, H. D. Berry. In press. From the predictable to the unexpected: kelp forest and benthic invertebrate community dynamics following decades of sea otter expansion. Oecologia.Go to metadata icon

Shelton, A. O., W. H. Satterthwaite, E. Ward, B. E. Feist, B. J. Burke. In press. Using hierarchical models to estimate stock-specific and seasonal variation in ocean distribution, survivorship, and aggregate abundance of fall run Chinook salmon. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Sol, S. Y., A. Hanson, K. Marcoe, L. L. Johnson. In press. Juvenile salmon assemblages at the Mirror Lake Complex in the lower Columbia River before and after a culvert modification. North American Journal of Fisheries Management.Go to metadata icon

Sutherland, K. R., H. L. Sorensen, O. N. Blondheim, R. D. Brodeur, A. Galloway. In press. Range expansion of tropical pyrosomes in the northeast Pacific Ocean. Ecology.Go to metadata icon

Tallis, H., G. Bratman, J. F. Samhouri, J. Fargione. In press. Are California Elementary School Test Scores More Strongly Associated with Urban Trees Than Poverty? Frontiers in Environmental Psychology.Go to metadata icon

Waples RS, S Mariani, and C. Benvenuto.  In press.  Consequences of sex change for effective population size.  Proc Royal Soc. London, B.Go to metadata icon


Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.Go to metadata icon

Ward, E. J., H. Delgado-Nordmann, R. Brenner, A. H. Beaudreau, S. D. Moffitt, A. O. Shelton. In press. Assessing long-term changes in sex ratios of Pacific herring in Prince William Sound. Fisheries Research.Go to metadata icon

Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon


2019

Thorson, J. T. 2019. The next link will exit from NWFSC web site Guidance for decisions using the Vector Autoregressive Spatio-Temporal (VAST) package in stock, ecosystem, habitat and climate assessments. Fisheries Research, 210:143-161. doi:https://doi.org/10.1016/j.fishres.2018.10.013Go to metadata icon


2018

Fonner, R., and A. Warlick. 2018. Marine Protected Resources on the U.S. West Coast: Current Management and Opportunities for Applying Economic Analysis. U.S. Department of Commerce, NOAA Technical Memorandum NMFS-NWFSC-144.Go to metadata icon

Hall, J. E., C. M. Greene, O. Stefankiv, J. H. Anderson, B. Timpane-Padgham, G. R. Pess, T. J. Beechie. 2018. Large river habitat complexity and productivity of Chinook salmon in Puget Sound Rivers. PLoS ONE.Go to metadata icon

Hard, J. J. 2018. Robin S. Waples - Recipient of the 2018 Molecular Ecology Prize. Molecular Ecology.Go to metadata icon

Henderson M, Fiechter J, Huff DD, Wells BK. 2018. Spatial variability in ocean-mediated growth potential is linked to Chinook salmon survival. Fish Oceanogr. 00:1-11. https://doi.org/10.1111/fog.12415Go to metadata icon

Lamb, J. J., B. P. Sandford, G. A. Axel, M. G. Nesbit, B. L. Sanderson. 2018. Monitoring the migrations of wild Snake River spring/summer Chinook salmon juveniles: fish collection and tagging, 2018. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.Go to metadata icon

Manhard, C. V., M. Adkinson, J. J. Hard, W. W. Smoker, A. J. Gharrett. 2018. Local adaptation of phenology revealed in outcrosses between spawning segments of a salmonid population. Molecular Ecology. doi:10.1111/mec.14908Go to metadata icon

Marandel F, Lorance P,  Berthelé O, Trenkel VM, Waples RS, Lamy J-B. 2018. Estimating effective population size of large fish populations, is it feasible?  Fish and Fisheries (published online 24 November 2018; DOI: 10.1111/faf.12338)Go to metadata icon

Marshall, K. N., L. E. Koehn, P. S. Levin, T. E. Essington, O. Jensen. 2018. Inclusion of ecosystem information in U.S. fish stock assessments suggests movement towards ecosystem-based fisheries management. ICES Journal of Marine Science. doi:https://doi.org/10.1093/icesjms/fsy152Go to metadata icon

Marshall, K. N., J. T. Duffy-Anderson, E. Ward, S. Anderson, M. E. Hunsicker, B. Williams. 2018. Long-term trends in ichthyoplankton assemblage structure, biodiversity, and community synchrony in the Gulf of Alaska and their relationships to ocean conditions. Progress in Oceanography.Go to metadata icon