Click the links to go to documents. Click the green arrow to see metadata.This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.
Andrews, K. S., K. M. Nichols, C. J. Harvey, N. Tolimieri, R. Garner, A. Obaza, D. M. Tonnes. In press. All hands on deck: local ecological knowledge and expert volunteers contribute to the first delisting of a marine fish species under the Endangered Species Act. Citizen Science: Theory and Practice.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035
Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216
Armitage, D. R., D. K. Okamoto, J. J. Silver, T. Francis, P. S. Levin, A. E. Punt, I. P. Davies, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, A. D. MacCall, M. R. Poe, S. Reifenstuhl, A. O. Shelton, T. F. Thornton, R. Voss, J. Woodruff. In press. Integrating governance with quantitative evaluation of resource management strategies to improve social and ecological outcomes. BioScience.
Balmer, B. C., G. M. Ylitalo, S. Watwood, B. M. Quigley, J. L. Bolton, K. L. Mullin, P. E. Rosel, T. K. Rowles, T. Speakman, E. S. Zolman, L. H. Schwacke. In press. Comparison of persistent organic pollutants (POPs) between small cetaceans in coastal and estuarine waters of the northern Gulf of Mexico. Marine Pollution Bulletin.
Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11
Dai, X., B. D. Bill, N. G. Adams, U. Tillmann, C. A. Sloan, D. Lu, V. L. Trainer. In press. The effect of temperature and salinity on growth rate and azaspiracid concentration in two strains of Azadinium poporum (Dinophyceae) from Puget Sound, Washington State. Harmful Algae.
Goldbogen, J. A., D. E. Cade, D. M. Wisniewska, et al., M. B. Hanson, M. M. Holt. In press. Why whales are big but not bigger: Physiological drivers and ecological limits in the age of ocean giants. Science.
Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.
Harvey, C. J., J. L. Fisher, J. F. Samhouri, G. D. Williams, T. B. Francis, K. C. Jacobson, Y. L. deReynier, M. E. Hunsicker, N. Garfield. In press. The importance of long-term ecological time series for integrated ecosystem assessment and ecosystem-based management. Progress in Oceanography.
Holt, M. M., M. B. Hanson, C. K. Emmons, D. Haas, D. A. Giles, J. T. Hogan. In press. Sounds associated with foraging and prey capture in individual fish-eating killer whales, Orcinus orca. Journal of the Acoustical Society of America.
Keogh, M. J., B. Taras, K. B. Beckmen, K. A. Burek-Huntington, G. M. Ylitalo, B. S. Fadely, L. Rea, K. W. Pitcher. In press. Organochlorine contaminant concentrations in blubber of young Steller sea lion (Eumetopias jubatus) are influenced by region, age, sex, and lipid stores. Science of the Total Environment.
Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.
Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment.
Michel, C. J., J. M. Smith, B. Lehman, N. J. Demetras, D. D. Huff, P. L. Brandes, J. A. Israel, T. P. Quinn, S. A. Hayes. In press. Limitations of active removal to manage predatory fish populations. North American Journal of Fisheries Management.
Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.
Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003
Ohlberger, J., D. E. Schindler, E. J. Ward, T. Walsworth, T. E. Essington. In press. Resurgence of an apex marine predator and the decline in prey body size. Proceedings of the National Academy of Sciences.
Okamoto, D. K., M. R. Poe, T. B. Francis, A. E. Punt, P. S. Levin, A. O. Shelton, D. R. Armitage, J. S. Cleary, R. R. Jones, H. Kitka, L. C. Lee, A. D. MacCall, J. McIssac, S. Reifenstuhl, J. J. Silver, J. Schmidt, T. F. Thornton, R. Voss, J. Woodruff. In press. Attending to spatial social-ecological sensitivities to improve ecological trade-off assessments. Fish and Fisheries.
Trushenski, J. T., D. A. Larsen, M. A. Middleton, M. Jakaitis, E. L. Johnson, C. C. Kozfkay, P. A. Kline. In press. Search for the Smoking Gun: Identifying and Addressing the Causes of Post-release Morbidity and Mortality of Hatchery-reared Snake River Sockeye Salmon Smolts. Transactions of the American Fisheries Society.
Colt, J., Maynard, D. 2019a. Correction of Metabolic Parameters and Unit Process Performance Data. ¿ Part I. Derivation of Equations. Aquacultural Engineering, 86, 101999, https://doi.org/10.1016/j.aquaeng.2019.101999. Colt, J., Maynard, D. 2019b. Correction of Metabolic Parameters and Unit Process Performance Data. ¿ Part II. Comparison of Analytical Approaches. Aquacultural Engineering, 87, 102019, https://doi.org/10.1016/j.aquaeng.2019.102019.
Gardner, L. D., K. A. Peck, G. W. Goetz, T. L. Linbo, J. Cameron, N. L. Scholz, B. A. Block, J. Incardona. 2019. Cardiac remodeling in response to embryonic crude oil exposure involves unconventional NKX family members and innate immunity genes. Journal of Experimental Biology.
Gertseva, V. V., S. E. Matson, I. G. Taylor, J. Bizzaro, J. R. Wallace. 2019. Stock assessment of the Longnose Skate (Beringraja rhina) in state and Federal waters off California, Oregon and Washington. Pacific Fishery Management Council, Portland, OR.
Gonzalez, S., J. K. Horne, E. J. Ward. 2019. Temporal variability in pelagic biomass distributions at wave and tidal sites and implications for standardization of biological monitoring. International Marine Energy Journal.
Holland, D.S. and C. Martin. Bycatch Quotas, Risk Pools, and Cooperation in the Pacific Whiting Fishery. Frontiers in Marine Science, 27 September 2019 https://doi.org/10.3389/fmars.2019.00600
Meador, J. P., J. Nahrgang. 2019. Characterizing Crude Oil Toxicity to Early-Life Stage Fish Based On a Complex Mixture: Are We Making Unsupported Assumptions? Environmental Science & Technology, 53:11080-11092. doi:10.1021/acs.est.9b02889
Moore, M. K., K. Frazier M.S. 2019. Humans are Animals, Too: Critical Commonalities and Differences Between Human and Wildlife Forensic Genetics. Journal of Forensic Sciences, 64(6):1603-1621. doi:https://doi.org/10.1111/1556-4029.14066
Ogden, D. A., A. L. Barenberg, R. M. Gleason. 2019. Operation of the adult trap at Lower Granite Dam, 2018. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.
Rhodes, L. D. and Mimeault, C. 2019. Characterization of Renibacterium salmoninarum and bacterial kidney disease to inform pathogen transfer risk assessments in British Columbia. DFO Can. Sci. Advis. Sec. Res. Doc. 2019/018. vi + 46 p.
Sakinan, S., G. L. Lawson, P. H. Wiebe, D. Chu. 2019. Accounting for seasonal and composition-related variability in acoustic material properties in estimating copepod and krill target strength. Limnology and Oceanography: Methods.
Satterthwaite, W. H., K. S. Andrews, B. J. Burke, J. L. Gosselin, C. M. Greene, C. J. Harvey, S. H. Munsch, M. R. O'Farrell, J. F. Samhouri, K. L. Sobocinski. 2019. Ecological thresholds in forecast performance for key United States West Coast Chinook salmon stocks. ICES Journal of Marine Science.
Taylor, I. G., V. V. Gertseva, A. Stephens, J. Bizzaro. 2019. Status of Big Skate (Beringraja binoculata) Off the U.S. West Coast. Report to Pacific Fishery Management Counci Portland, OR.
Tennessen, J. B., M. M. Holt, E. J. Ward, M. B. Hanson, C. K. Emmons, D. A. Giles, J. T. Hogan. 2019. Hidden Markov models reveal temporal patterns and sex differences in killer whale behavior. Scientific Reports.
Ward, E. J., S. C. Anderson, L. Damiano, M. E. Hunsicker, M. A. Litzow. 2019. Modeling regimes with extremes: the bayesdfa package for identifying and forecasting common trends and anomalies in multivariate time-series data. R Journal.
Windsor, A. M. PhD, M. K. Moore, K. A. Warner, S. R. Stadig, J. Deeds. 2019. Evaluation of variation within the barcode region of Cytochrome c Oxidase I (COI) for the detection of commercial Callinectes sapidus Rathbun, 1896 (blue crab) products of non-US origin. PeerJ, 7:e7827. doi:https://doi.org/10.7717/peerj.7827