Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216Go to metadata icon

Breslow, S. J., A. Margaret, D. Holstein, B. Sojka, R. Barnea, X. Basurto, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, C. Hicks, A. Levine, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. In press. Evaluating Indicators of Human Wellbeing for Ecosystem-Based Management. Ecosystem Health & Sustainability, (12). doi:10.1080/20964129.2017.1411767Go to metadata icon

Brodeur, R. D., M. E. Hunsicker, A. Hann, T. W. Miller. In press. Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources. Marine Ecology Progress Series.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Elias, A., F. P. Thrower, K. M. Nichols. In press. Rainbow trout personality: individual behavioral variation in juvenile Oncorhynchus mykiss. Behaviour.Go to metadata icon

Fonner, Robert, and Alok K. Bohara. "Optimal Control of Wild Horse Populations with Nonlethal Methods." Land Economics 93, no. 3 (2017): 390-412, doi:10.3368/le.93.3.390Go to metadata icon

Fulton, E. A., A. E. Punt, C. M. Dichmont, C. J. Harvey, R. Gorton. In press. Ecosystems say good management pays off. Fish and Fisheries.Go to metadata icon

Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. In press. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. PLoS ONE.Go to metadata icon

Hall, J. E., T. P. Khangaonkar, C. A. Rice, J. W. Chamberlin, T. Zackey, F. E. Leonetti, M. Rustay, K. L. Fresh, A. N. Kagley, M. Rowse. In press. Characterization of annual salinity and temperature patterns in a large river delta to support tidal wetland habitat restoration efforts. Northwest Science.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy.Go to metadata icon

Keller, A. A., P. H. Frey, J. R. Wallace, M. A. Head, C. R. Wetzel, J. M. Cope, J. H. Harms. In press. Canary rockfishes (Sebastes pinniger) return from the brink: catch, distribution and life history along the U.S. west coast (Washington to California). Marine Ecology Progress Series.Go to metadata icon

Kiffney, P. M., N. Sean, C. Jeremy, M. Liermann, D. G. Burrows. In press. Multiple pathways of carbon and nitrogen incorporation by consumers across an experimental gradient of salmon carcass inputs. Ecosphere.Go to metadata icon

Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Litz, M. N., J. A. Miller, R. D. Brodeur, E. A. Daly, L. A. Weitkamp, A. G. Hansen. In press. Energy dynamics of subyearling Chinook salmon reveal the importance of piscivory to short term growth during early marine residence. Fisheries Oceanography.Go to metadata icon

Manhard, C. V., M. Adkinson, J. J. Hard, W. W. Smoker, A. J. Gharrett. In press. Local adaptation of phenology revealed in outcrosses between spawning segments of a salmonid population. Molecular Ecology.Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Neely, M. G., J. S. Morey, P. Anderson, B. C. Balmer, G. M. Ylitalo, E. S. Zolman, T. Speakman, C. Sinclair, M. Bachman, K. Huncik, J. R. Kucklick, P. E. Rosel, K. L. Mullin, T. K. Rowles, L. H. Schwacke, F. M. Van Dolah. In press. Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the Northern Gulf of Mexico and Southeastern U.S. Atlantic Coast. Marine Genomics.Go to metadata icon

Neuman, M. J., S. Wang, S. Busch, C. Friedman, K. Gruenthal, R. G. Gustafson, D. Kushner, K. Stierhoff, G. VanBlaricom, S. Wright. In press. A Status Review of Pinto Abalone (Haliotis kamtschatkana) Along the West Coast of North America: Interpreting Trends, Addressing Uncertainty, and Assessing Risk for a Wide-ranging Marine Invertebrate. Journal of Shellfish Research.Go to metadata icon

Nogueira, A., N. Tolimieri, D. Gonzalez-Troncoso. In press. Using multivariate state-space models to examine commercial stocks p of Sebastes spp on the Flemish Cap. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Stern, R., S. K. Moore, V. L. Trainer, B. D. Bill, A. Fischer, S. Batten. In press. Spatial and temporal patterns of Pseudo-nitzschia genetic diversity in the North Pacific Ocean from the Continuous Plankton Recorder survey. Marine Ecology Progress Series.Go to metadata icon

Stock, B., E. J. Ward, J. T. Thorson, J. E. Jannot, B. X. Semmens. In press. The utility of spatial model-based estimators of unobserved bycatch. ICES Journal of Marine Science.Go to metadata icon

Sutherland, K. R., H. L. Sorensen, O. N. Blondheim, R. D. Brodeur, A. Galloway. In press. Range expansion of tropical pyrosomes in the northeast Pacific Ocean. Ecology.Go to metadata icon

Waples, R.S., and S. T. Lindley.  In press.  Genomics and conservation units:  The genetic basis of adult migration timing in Pacific salmonids.  Evolutionary Applications.Go to metadata icon

Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.Go to metadata icon

Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon


Cramer, Lori A., C. Flathers, D. Caracciolo, S.M.Russell, F. Conway. 2018. Graying of the fleet: Perceived impacts on coastal resilience and local policy. Marince Policy. 96, 27-35. Go to metadata icon

Farmer, N. A., K. Baker, D. G. Zeddies, S. L. Denes, D. P. Noren, L. Garrison, A. Machernis, E. M. Fougères, M. Zykov. 2018. Population consequences of disturbance by offshore oil and gas activity for endangered sperm whales (Physeter macrocephalus). Biological Conservation, 227:189-204. doi: to metadata icon

Lively, J. A., T. P. Good. 2018. Ghost Fishing. In Sheppard, C. R. (Ed.) World Seas: An Environmental Evaluation. Elsevier Science.Go to metadata icon

Luckenbach, J. A., Y. Yamamoto. 2018. Genetic & Environmental Sex Determination in Cold-Blooded Vertebrates: Fishes, Amphibians, and Reptiles. In Skinner, M. K., P. Swanson. (Eds.) Encyclopedia of Reproduction. Elsevier.Go to metadata icon

Thorson, J. T. 2018. Three problems with the conventional delta-model for biomass sampling data, and a computationally efficient alternative. Canadian Journal of Fisheries and Aquatic Sciences, 75(9):1369-1382. doi:10.1139/cjfas-2017-0266Go to metadata icon

Turner, J. W., J. J. Tallman, A. Macias, L. J. Pinnell, N. Elledge, D. N. Azadani, W. B. Nilsson, R. N. Paranjpye, R. N. Paranjpye, E. V. Armbrust, M. S. Strom. 2018. Comparative Genomic Analysis of Vibrio diabolicus and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species. Frontiers in Microbiology, 9(1893). doi:10.3389/fmicb.2018.01893Go to metadata icon

Ward, E. J., K. Oken, K. A. Rose, S. Sable, K. Watkins, M. D. Scheuerell, E. E. Holmes. 2018. Applying spatiotemporal models to monitoring data to quantify fish population responses to the Deepwater Horizon oil spill in the Gulf of Mexico. Environmental Monitoring and Assessment.Go to metadata icon

Zeman, S. M., M. Corrales-Ugalde, R. D. Brodeur, K. R. Sutherland. 2018. Trophic ecology of the neustonic cnidarian Velella velella in the northern California Current during an extensive bloom year: insights from gut contents and stable isotope analysis. Marine Biology, 165:150. doi: to metadata icon