Click the links to go to documents. Click the green arrow to see metadata.This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.
Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035
Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216
Balmer, B. C., G. M. Ylitalo, S. Watwood, B. M. Quigley, J. L. Bolton, K. L. Mullin, P. E. Rosel, T. K. Rowles, T. Speakman, E. S. Zolman, L. H. Schwacke. In press. Comparison of persistent organic pollutants (POPs) between small cetaceans in coastal and estuarine waters of the northern Gulf of Mexico. Marine Pollution Bulletin.
Balmer, B. C., E. S. Zolman, J. L. Bolton, D. A. Fauquier, E. P. Fougères, R. C. George, T. Goldstein, M. Gowen, T. Kolkmeyer, C. Le-Bert, B. Mase, T. Norton, J. Peterson, T. K. Rowles, J. T. Saliki, G. M. Ylitalo. In press. Ranging patterns and exposure to cumulative stressors of a Tursiops truncatus (common bottlenose dolphin) in Georgia. Southeastern Naturalist, 18.
Campbell, M. A., M. Hale, G. McKinney, K. M. Nichols, D. E. Pearse. In press. Long term conservation of ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae. Genes, Genomes, Genetics.
Chittaro, P. M., J. Hegg, B. P. Kennedy, L. A. Weitkamp, L. L. Johnson, C. Bucher, R. W. Zabel. In press. Juvenile river residence and performance of Snake River fall Chinook salmon. Ecology of Freshwater Fish.
Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11
Gavery, M., K. M. Nichols, B. A. Berejikian, C. P. Tatara, G. W. Goetz, J. T. Dickey, D. M. Van Doornik, P. Swanson. In press. Temporal dynamics of DNA methylation patterns in response to rearing juvenile steelhead (Oncorhynchus mykiss) in a hatchery versus simulated stream environment. Genes.
Gonzalez, S., J. K. Horne, E. J. Ward. In press. Temporal variability in pelagic biomass distributions at wave and tidal sites and implications for standardization of biological monitoring. International Marine Energy Journal.
Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.
Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy, 90. doi:https://doi.org/10.1016/j.marpol.2018.01.023
Huynh, T. B., W. T. Fairgrieve, E. S. Hayman, J. S. Lee, J. A. Luckenbach. In press. Inhibition of ovarian development and instances of sex reversal in genotypic female sablefish (Anoplopoma fimbria) exposed to elevated water temperature. General and Comparative Endocrinology.
Kuriyama, P.T,, D.S. Holland, T.A. Branch, L.A.K. Barnett, R.L. Hicks, K.E. Schnier. Catch shares drive fleet consolidation and increased targeting but not spatial effort concentration nor changes in location choice in a multispecies trawl fishery. Forthcoming Canadian Journal of Fisheries and Aquatic Sciences
Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.
Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.
Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment.
MacCall, A. D., T. B. Francis, D. R. Armitage, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, P. S. Levin, J. McIssac, D. K. Okamoto, M. R. Poe, A. E. Punt, S. Reifenstuhl, A. O. Shelton, J. J. Silver, T. F. Thornton, R. Voss, J. Woodruff. In press. A heuristic model of learned migration behavior exhibits distinctive spatial and reproductive dynamics. ICES Journal of Marine Science. doi:https://doi.org/10.1093/icesjms/fsy091
Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.
Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003
Smits, A. P., C. M. Ruffing, T. V. Royer, A. P. Appling, N. A. Griffiths, R. Bellmore, M. D. Scheuerell, T. K. Harms, J. Jones. In press. Detecting signals of large-scale climate phenomena on river flows and nitrogen, phosphorus, and silica loads in the Mississippi-Atchafalaya River Basin. Geophysical Research Letters.
Stawitz, C. C., T. E. Essington, T. A. Branch, M. A. Haltuch, A. Hollowed, N. Mantua, P. Spencer. In press. A state-space approach for detecting growth variation and application to North Pacific groundfish. Fisheries Research.
Stock, B., E. J. Ward, T. Eguchi, J. E. Jannot, J. T. Thorson, B. E. Feist, B. X. Semmens. In press. Comparing predictions of fisheries bycatch using multiple spatiotemporal species distribution model frameworks. Canadian Journal of Fisheries and Aquatic Sciences.
Van Doornik, D. M., D. R. Kuligowski, C. A. Morgan, C. A. Morgan, B. J. Burke, T. R. Seamons. In press. Insights, from genetic analyses, into stock-specific distribution of juvenile steelhead (Oncorhynchus mykiss) from the Columbia River during early marine migration. Fishery Bulletin.
Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.
Anderson, K., J. A. Luckenbach, Y. Yamamoto, A. Elizur. 2019. Impacts of Fsh, Igf, and high temperature on the expression of genes involved in steroidogenesis, cell communication, and apoptosis in isolated coho salmon ovarian follicles. Aquaculture, 506:60-69. doi:https://doi.org/10.1016/j.aquaculture.2019.03.025
Axel, G. A., G. T. Brooks. 2019. DRAFT: New marking and monitoring technologies for the passive integrated transponder. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.
Barth, J. A., S. Allen, E. Dever, R. Dewey, W. Evans, R. A. Feely, J. L. Fisher, J. Fram, B. Hales, D. Ianson, J. Jackson, K. Juniper, O. Kawka, D. Kelley, J. Klymak, J. Konovsky, P. M. Kosro, A. Kurapov, E. Mayorga, P. MacCready, J. Newton, R. I. Perry, C. Risien, M. Robert, T. Ross, R. Shearman, J. D. Schumacher, S. A. Siedlecki, V. L. Trainer, S. Waterman, C. Wingard. 2019. Better regional ocean observing through cross-national cooperation: A case study from the northeast Pacific. Frontiers in Marine Science.
Beaudreau, A. H., E. J. Ward, R. Brenner, A. O. Shelton, J. C. Shriver, J. Watson, S. C. Anderson, A. C. Haynie, K. N. Marshall. 2019. Thirty years of change and the future of Alaskan fisheries: Shifts in fishing participation and diversification in response to environmental, regulatory, and economic pressures. Fish and Fisheries.
Evans, M. L., J. J. Hard, A. N. Black, N. M. Sard, K. G. O'Malley. 2019. A quantitative genetic analysis of life-history traits and lifetime reproductive success in reintroduced Chinook salmon. Conservation Genetics. doi:https://doi.org/10.1007/s10592-019-01174-4
Frick, K. E., S. C. Corbett, G. T. Brooks. 2019. Development and evaluation of a wetted wall for adult lamprey passage at the Bradford Island Fishway, 2017-2018. Report of the National Marine Fisheries Service to the U.S. Army Corps of Engineers. Portland, Oregon.
Galligan, T. M., B. C. Balmer, L. H. Schwacke, J. L. Bolton, B. M. Quigley, P. E. Rosel, G. M. Ylitalo, A. S. Boggs. 2019. Examining the Relationships Between Blubber Steroid Hormone and Persistent Organic Pollutant Measurements in Common Bottlenose Dolphins. Environmental Pollution, 249:982-991.
Honeycutt, J. L., C. A. Deck, S. C. Miller, M. E. Severance, E. B. Atkins, J. A. Luckenbach, J. A. Buckel, H. V. Daniels, J. A. Rice, R. J. Borski, J. Godwin. 2019. Warmer waters masculinize wild populations of a fish with temperature-dependent sex determination. Scientific Reports, 9:6527. doi:https://doi.org/10.1038/s41598-019-42944-x
Johnson, K. F., J. T. Thorson, A. E. Punt. 2019. Investigating the value of including depth during spatiotemporal index standardization. Fisheries Research, 216:12-137. doi:10.1016/j.fishres.2019.04.004
Lamb, J. J., B. P. Sandford, G. A. Axel, S. G. Smith, M. G. Nesbit, B. L. Sanderson. 2019. Monitoring the migrations of wild Snake River spring/summer Chinook salmon juveniles: survival and timing, 2018. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.
Larsen DA, Harstad DL, Fuhrman AE, Knudsen CM, Schroder SL, Bosch WJ, et al. (2019) Maintaining a wild phenotype in a conservation hatchery program for Chinook salmon: The effect of managed breeding on early male maturation. PLoS ONE 14(5): e0216168. https://doi.org/10.1371/journal.pone.0216168
Moran, BM, K Hench, RS Waples, MC Höppner, CC Baldwin, O McMillan, O Puebla. 2019. The evolution of microendemism in a reef fish (Hypoplectrus maya). Molecular Ecology (published online 24 April 2019; https://doi.org/10.1111/mec.15110).
Moser, M. L., J. Hume, K. Aronsuu, R. Lampman, A. D. Jackson. 2019. Lamprey Reproduction and Early Life History: Insights from Artificial Propagation. In Docker, M. F. (Ed.) Biology of Lampreys Volume 2. Springer.
Moser, M. L., M. L. Keefer, S. C. Corbett, K. E. Frick, C. C. Caudill, S. Tackley. 2019. Providing refuges for adult Pacific lamprey Entosphenus tridentatus inside fishways. Aquaculture and Fisheries.