Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Andrews, K. S., K. M. Nichols, C. J. Harvey, N. Tolimieri, R. Garner, A. Obaza, D. M. Tonnes. In press. All hands on deck: local ecological knowledge and expert volunteers contribute to the first delisting of a marine fish species under the Endangered Species Act. Citizen Science: Theory and Practice.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216Go to metadata icon

Armitage, D. R., D. K. Okamoto, J. J. Silver, T. Francis, P. S. Levin, A. E. Punt, I. P. Davies, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, A. D. MacCall, M. R. Poe, S. Reifenstuhl, A. O. Shelton, T. F. Thornton, R. Voss, J. Woodruff. In press. Integrating governance with quantitative evaluation of resource management strategies to improve social and ecological outcomes. BioScience.Go to metadata icon

Balmer, B. C., G. M. Ylitalo, S. Watwood, B. M. Quigley, J. L. Bolton, K. L. Mullin, P. E. Rosel, T. K. Rowles, T. Speakman, E. S. Zolman, L. H. Schwacke. In press. Comparison of persistent organic pollutants (POPs) between small cetaceans in coastal and estuarine waters of the northern Gulf of Mexico. Marine Pollution Bulletin.Go to metadata icon

Bellanger, M., D.S. Holland, C.M. Anderson, O. Guyader, and C. Macher. Incentive effect of joint and several liability in fishery cooperatives on regulatory compliance. Fisher and Fisheries.Go to metadata icon

Blake, R., C. L. Ward, M. E. Hunsicker, A. O. Shelton, A. B. Hollowed. In press. Spatial community structure of groundfish is conserved across the Gulf of Alaska. Marine Ecology Progress Series.Go to metadata icon

Campbell, M. A., M. Hale, G. McKinney, K. M. Nichols, D. E. Pearse. In press. Long term conservation of ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae. Genes, Genomes, Genetics.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Chittaro, P. M., J. Hegg, B. P. Kennedy, L. A. Weitkamp, L. L. Johnson, C. Bucher, R. W. Zabel. In press. Juvenile river residence and performance of Snake River fall Chinook salmon. Ecology of Freshwater Fish.Go to metadata icon

Chow, M. I., J. I. Lundin, C. J. Mitchell, J. W. Davis, G. Young, N. L. Scholz, J. McIntyre. In press. An urban runoff mortality syndrome in juvenile coho salmon. Aquatic Toxicology.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Deacy, W. W., W. B. Leacock, E. J. Ward, J. B. Armstrong. In press. Aerial surveys cause high magnitude but ephemeral decreases in bear presence at salmon streams in Kodiak, Alaska. PLoS ONE.Go to metadata icon

Elias, A., F. P. Thrower, K. M. Nichols. In press. Rainbow trout personality: individual behavioral variation in juvenile Oncorhynchus mykiss. Behaviour.Go to metadata icon

Gavery, M., K. M. Nichols, B. A. Berejikian, C. P. Tatara, G. W. Goetz, J. T. Dickey, D. M. Van Doornik, P. Swanson. In press. Temporal dynamics of DNA methylation patterns in response to rearing juvenile steelhead (Oncorhynchus mykiss) in a hatchery versus simulated stream environment. Genes.Go to metadata icon

Gonzalez, S., J. K. Horne, E. J. Ward. In press. Temporal variability in pelagic biomass distributions at wave and tidal sites and implications for standardization of biological monitoring. International Marine Energy Journal.Go to metadata icon

Haltuch, M. A., N. Tolimieri. In press. Oceanographic drivers of petrale sole recruitment in the California Current. Fisheries Oceanography.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Huynh, T. B., W. T. Fairgrieve, E. S. Hayman, J. S. Lee, J. A. Luckenbach. In press. Inhibition of ovarian development and instances of sex reversal in genotypic female sablefish (Anoplopoma fimbria) exposed to elevated water temperature. General and Comparative Endocrinology, 279:88-98.Go to metadata icon

Keller, A. A., J. H. Harms, J. R. Wallace, C. Jones, J. A. Benante, A. Chappell. In press. Changes in long-lived rockfishes after more than a decade of protection within California¿s largest marine reserve on Areas (2014 - 2016). Marine Ecology Progress Series, 623:175-193. doi: to metadata icon

Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment.Go to metadata icon

Morgan, C. A., B. R. Beckman, L. A. Weitkamp, K. L. Fresh. In press. Recent Ecosystem Disturbance in the Northern California Current. Fisheries. doi:10.1002/fsh.10273Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Nelson, B., A. O. Shelton, M. J. Ford, E. J. Ward. In press. Synchronization of hatchery-origin Chinook salmon. Ecosphere.Go to metadata icon

Pfeiffer, L., T. Petesch. In press. The impact of rationalization management on exposure to high wind conditions in the Alaska Bering Sea/Aleutian Island crab fisheries. Journal of Agromedicine.Go to metadata icon

Punt, A. E., J. M. Cope. In press. Extending Integrated Stock Assessments Models to Use Non-Depensatory Three-Parameter Stock-Recruitment Relationships. Fisheries Research.Go to metadata icon

Stimpert, A. K., B. C. Madrigal, W. W. Wakefield, M. M. Yoklavich. In press. Acoustic influence of underwater mobile survey vehicles on the soundscape of Pacific rockfish habitat. Journal of the Acoustical Society of America Express Letters.Go to metadata icon

Trushenski, J. T., D. A. Larsen, M. A. Middleton, M. Jakaitis, E. L. Johnson, C. C. Kozfkay, P. A. Kline. In press. Search for the Smoking Gun: Identifying and Addressing the Causes of Post-release Morbidity and Mortality of Hatchery-reared Snake River Sockeye Salmon Smolts. Transactions of the American Fisheries Society.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon


Barnett, L., E. Ward, J. E. Jannot, A. O. Shelton. 2019. Measures of dynamic heterogeneity reveal interdependence of marine community density and fishery removals. Ecological Indicators.Go to metadata icon

Crozier, L. G., M. M. McClure, T. J. Beechie, S. J. Bograd, D. A. Boughton, M. I. Carr, T. D. Cooney, J. B. Dunham, C. M. Greene, M. A. Haltuch, E. L. Hazen, D. M. Holzer, D. D. Huff, R. C. Johnson, C. E. Jordan, I. C. Kaplan, S. T. Lindley, N. J. Mantua, P. B. Moyle, J. M. Myers, M. W. Nelson, L. A. Weitkamp, L. A. Weitkamp, E. Willis-Norton, M. W. Nelson. 2019. The next link will exit from NWFSC web site Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem. PLoS ONE, 14(7).Go to metadata icon

Haltuch, M. A., E. Brooks, J. K. Brodziak, K. F. Johnson, N. Klibansky, R. D. Nash, M. R. Payne, K. Shertzer, S. Subbey, B. K. Wells. 2019. Unraveling the Recruitment Problem: A Review of Environmentally-Informed Forecasting. Fisheries Research, 217(September):189-216. doi: to metadata icon

Jackson, A. D., M. L. Moser, S. Onjukka, S. E. LaPatra, K. Lujan, C. Samson, M. G. White, M. Blair, L. D. Rhodes, R. Lampman, A. N. Maine, J. C. Jolley. 2019. The next link will exit from NWFSC web site Occurrence of pathogens in Pacific lamprey (Entosphenus tridentatus). Reviews in Fish Biology and Fisheries, doi: to metadata icon

Johnson, K. F., J. T. Thorson, A. E. Punt. 2019. Investigating the value of including depth during spatiotemporal index standardization. Fisheries Research, 216:12-137. doi:10.1016/j.fishres.2019.04.004Go to metadata icon

Kozfkay, C. C., M. Peterson, B. P. Sandford, E. Johnson, P. A. Kline. 2019. The next link will exit from NWFSC web site The productivity and viability of Snake River sockeye salmon hatchery adults released into Redfish Lake, Idaho. Transactions of the American Fisheries Society, 148(2):308-323.Go to metadata icon

Lehnert, SJ, T Kess, P Bentzen, MP Kent, S Lien, J Gilbey, M Clément, NW Jeffrey, RS Waples, and IR Bradbury.  2019.  Genomic signatures and correlates of widespread population declines in salmon.  Nature Communications 10:2996 (doi: 10.1038/s41467-019-10972).Go to metadata icon

Maunder, M., J. T. Thorson. 2019. The next link will exit from NWFSC web site Modeling temporal variation in recruitment in fisheries stock assessment: a review of theory and practice. Fisheries Research, 217:71-86. doi: to metadata icon

Moser, M. L., J. Hume, K. Aronsuu, R. Lampman, A. D. Jackson. 2019. Lamprey Reproduction and Early Life History: Insights from Artificial Propagation. In Docker, M. F. (Ed.) Biology of Lampreys Volume 2. Springer.Go to metadata icon

Thorson, J. T. 2019. The next link will exit from NWFSC web site Correcting bias-correction: Let's simplify stock assessment by replacing tuning algorithms with statistics. Fisheries Research, 217:133-139. doi: to metadata icon

Thorson, J. T., M. W. Dorn, O. S. Hamel. 2019. The next link will exit from NWFSC web site Steepness for West Coast rockfishes: Results from a twelve-year experiment in iterative regional meta-analysis. Fisheries Research, 217(11-20). doi: to metadata icon

Thorson, J. T., M. Rudd, H. Winker. 2019. The case for estimating recruitment variation in data-moderate and data-poor age-structured models. Fisheries Research, 217:87-97. doi: to metadata icon

Trigg, S., P. McElhany, M. Maher, D. Perez, S. Busch, K. M. Nichols. 2019. Uncovering mechanisms of global ocean change effects on the Dungeness crab (Cancer magister) through metabolomics analysis. Scientific Reports, 9:10717. doi: to metadata icon

Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. 2019. Beaver activity increases habitat complexity and spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences, 76(7):1086-1095. doi: to metadata icon