Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. P. Dietrich, M. Rew, W. Olson, G. Young, F. W. Goetz. In press. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research.Go to metadata icon

Breslow, S. J., A. Margaret, D. Holstein, B. Sojka, R. Barnea, X. Basurto, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, C. Hicks, A. Levine, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. In press. Evaluating Indicators of Human Wellbeing for Ecosystem-Based Management. Ecosystem Health & Sustainability, (12). doi:10.1080/20964129.2017.1411767Go to metadata icon

Brodeur, R. D., M. E. Hunsicker, A. Hann, T. W. Miller. In press. Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources. Marine Ecology Progress Series.Go to metadata icon

Buckner, E., D. Hernandez, J. F. Samhouri. In press. Conserving connectivity: human influence on subsidy transfer and relevant restoration efforts. Ambio.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Chittaro, P. M., L. L. Johnson, D. J. Teel, P. Moran, S. Y. Sol, K. H. Macneale, R. W. Zabel. In press. Variability in the performance of juvenile Chinook salmon is explained primarily by when and where they resided in estuarine habitats. Ecology of Freshwater Fish.Go to metadata icon

Cruz-Acevedo, E., N. Tolimieri, H. Aguirre-Villaseñor. In press. Deep-sea fish assemblages (300-2100 m) in the Eastern Pacific off Northern Mexico. Marine Ecology Progress Series. doi:https://doi.org/10.3354/meps12502.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Farmer, N. A., D. P. Noren, E. P. Fougères, A. Machernis, K. Baker. In press. Resilience of endangered sperm whales (Physeter macrocephalus) to foraging disturbance in the Gulf of Mexico, USA: A bioenergetics approach. Marine Ecology Progress Series.Go to metadata icon

Fonner, Robert, and Alok K. Bohara. "Optimal Control of Wild Horse Populations with Nonlethal Methods." Land Economics 93, no. 3 (2017): 390-412, doi:10.3368/le.93.3.390Go to metadata icon

Guzman, J. M., J. A. Luckenbach, D. A. da Silva, E. S. Hayman, G. M. Ylitalo, F. W. Goetz, P. Swanson. In press. Seasonal variation of pituitary gonadotropin subunit, brain-type aromatase and sex steroid receptor mRNAs, and plasma steroids during gametogenesis in wild sablefish. Comparative Biochemistry and Physiology Part A: Physiology.Go to metadata icon

Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. In press. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. PLoS ONE.Go to metadata icon

Hall, J. E., T. P. Khangaonkar, C. A. Rice, J. W. Chamberlin, T. Zackey, F. E. Leonetti, M. Rustay, K. L. Fresh, A. N. Kagley, M. Rowse. In press. Characterization of annual salinity and temperature patterns in a large river delta to support tidal wetland habitat restoration efforts. Northwest Science.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy.Go to metadata icon

Hernandez-Ortz, J. S., D. I. Hernandez-Mena, G. Alama-Bermejo, R. Kutcha, K. C. Jacobson. In press. Morphological and molecular characterisation of Aporocotyle margolisi Smith, 1967 (Digenea: Aporocotylidae) from the North Pacific hake Merluccius productus (Ayres) (Gadiformes: Merlucciidae) off Oregon. Systematic Parasitology.Go to metadata icon

Jackson, T. M., G. C. Roegner, K. g. OMalley. In press. Evidence for isolation by distance and inter-annual variation in genetic structure of Dungeness crab (Cancer magister) along the U.S. west coast. Molecular Ecology. doi:doi: 10.1111/mec.14443Go to metadata icon

Kaplan, I. C., T. B. Francis, A. E. Punt, L. E. Koehn, E. N. Curchitser, F. Hurtado-Ferro, K. F. Johnson, S. Lluch-Cota, W. J. Sydeman, T. E. Essington, N. G. Taylor, K. K. Holsman, A. D. MacCall, P. S. Levin. In press. A multi-model approach to understanding the role of Pacific sardine in the California Current food web. Marine Ecology Progress Series.Go to metadata icon

Kiffney, P. M., N. Sean, C. Jeremy, M. Liermann, D. G. Burrows. In press. Multiple pathways of carbon and nitrogen incorporation by consumers across an experimental gradient of salmon carcass inputs. Ecosphere.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leonard, J. L., E. Steiner. In press. Initial Economic Impacts of Pacific Coast Groundfish Fishery Individual Fishing Quota Program. North American Journal of Fisheries Management, 37(4):862-881. doi:10.1080/02755947.2017.1330784Go to metadata icon

Levin, P. S., T. E. Essington, K. N. Marshall, L. E. Koehn, L. Anderson, A. Bundy, C. Carothers, F. Coleman, L. R. Gerber, J. H. Grabowski, E. Houde, O. Jensen, C. Möllmann, K. A. Rose, J. N. Sanchirico, A. D. Smith. In press. Building effective Fishery Ecosystem Plans. Marine Policy.Go to metadata icon

Lomeli, M. J., W. W. Wakefield, B. Herrmann. In press. Illuminating the Headrope of a Selective Flatfish Trawl: Effect on Catches of Groundfishes Including Pacific Halibut. Marine and Coastal Fisheries.Go to metadata icon

Macqueen, D. J., C. Primmer, R. Houston, B. Nowak, L. Bernatchez, S. Bersath, W. Davidson, C. Gallardo-Escarate, T. Goldammer, Y. Guiguen, P. Iturra, J. Kijas, B. Koop, S. Lien, A. Maass, S. Martin, P. McGinnity, M. Montecino, K. Naish, K. M. Nichols, K. Olafsson, S. Omholt, Y. Palti, G. Plastow, C. Rexroad, M. Rise, S. Sandve, P. Schulte, A. Tello, R. Vidal, J. O. Vik, A. Wargelius, J. M. Yanez. In press. Functional Analysis of All Salmonid Genomes: an international initiative supporting future salmonid research, conservation, and aquaculture. BMC Genomics.Go to metadata icon

Masi, M., C. H. Ainsworth, I. C. Kaplan, M. J. Schirripa. In press. Evaluation of robust single-species harvest control rules for managing reef fish in the Gulf of Mexico. Marine and Coastal Fisheries.Go to metadata icon

Milligan BG, FI Archer, A-L Ferchaud, BK Hand, EM Kierepka, and RS Waples.  (in press) Disentangling genetic structure for genetic monitoring of complex populations.  Evolutionary Applications.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Neely, M. G., J. S. Morey, P. Anderson, B. C. Balmer, G. M. Ylitalo, E. S. Zolman, T. Speakman, C. Sinclair, M. Bachman, K. Huncik, J. R. Kucklick, P. E. Rosel, K. L. Mullin, T. K. Rowles, L. H. Schwacke, F. M. Van Dolah. In press. Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the Northern Gulf of Mexico and Southeastern U.S. Atlantic Coast. Marine Genomics.Go to metadata icon

Ohlberger, J., E. J. Ward, B. Lewis, D. E. Schindler. In press. Demographic changes in Chinook salmon across the Northeast Pacific Ocean. Fish and Fisheries.Go to metadata icon

Olsen, E., I. C. Kaplan, C. H. Ainsworth, G. Fay, S. K. Gaichas, R. J. Gamble, R. Girardin, H. N. Morzaria Luna, C. Hansen, K. Johnson, M. Savina-Rolland, H. M. Townsend, M. Weijerman, E. A. Fulton, J. S. Link. In press. Ocean futures as explored using a worldwide suite of ecosystem models. Frontiers in Marine Science.Go to metadata icon

Schwenke, P. L., L. K. Park, L. Hauser. In press. Introgression among three rockfish species (Sebastes spp.) In the Salish Sea, Northeast Pacific Ocean. PLoS ONE.Go to metadata icon

Thom, R. M., S. A. Breithaupt, H. L. Diefenderfer, A. Borde, G. C. Roegner, G. Johnson, D. L. Woodruff. In press. Storm-Driven Particulate Organic Matter Flux Connects a Tidal Tributary Floodplain Wetland, Main Stem River, and Estuary. Ecological Applications.Go to metadata icon

Tolimieri, N., M. A. Haltuch, Q. X. Li, M. Jacox, S. J. Bograd. In press. Ooceanographic drivers of sablefish recruitment in the California Current. Fisheries Oceanography.Go to metadata icon


Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon


2018

Barceló, C., L. Ciannelli, R. D. Brodeur. 2018. Pelagic marine refugia and climatically sensitive areas in an eastern boundary current upwelling system. Global Change Biology, 24:668-680. doi:10.1111/gcb.13857Go to metadata icon

Berejikian BA, Van Doornik DM (2018) Increased natural reproduction and genetic diversity one generation after cessation of a steelhead trout (Oncorhynchus mykiss) conservation hatchery program. PLoS ONE 13(1): e0190799. https://doi.org/10.1371/journal. pone.0190799Go to metadata icon

Fullerton, A. H., C. E. Torgersen, J. J. Lawler, E. A. Steel, J. L. Ebersole, S. Y. Lee. 2018. Longitudinal thermal heterogeneity in rivers and refugia for coldwater species: effects of scale and climate change. Aquatic Sciences, 80(3):1-15.Go to metadata icon

Gertseva, V. V., J. M. Cope. 2018. The next link will exit from NWFSC web site Rebuilding analysis for yelloweye rockfish (Sebastes ruberrimus) based on the 2017 stock assessment. Pacific Fishery Management Council, Portland, OR.Go to metadata icon

Gosselin, J. L., R. W. Zabel, J. J. Anderson, J. R. Faulkner, A. M. Baptista, B. P. Sandford. 2018. The next link will exit from NWFSC web site Conservation planning for freshwater carryover effects on Chinook salmon survival. Ecology and Evolution, 8(1):319-332.Go to metadata icon

Gruss, A., J. T. Thorson, B. Babcock, J. H. Tarnecki. 2018. The next link will exit from NWFSC web site Producing distribution maps for informing ecosystem-based fisheries management using a comprehensive survey database and spatio-temporal models. ICES Journal of Marine Science, 75(1):158¿177. doi:10.1093/icesjms/fsx120Go to metadata icon

Hunsicker, M. E., S. J. Bograd, L. G. Crozier, S. McClatchie, J. A. Morris Jr., W. T. Peterson, C. Price. 2018. Climate change impacts on fisheries and aquaculture of the United States: California Current. Pages 165-176 in Phillips, B. F., M. Pérez-Ramírez. (Eds.) Climate Change Impacts on Fisheries and Aquaculture. Wiley Blackwell.Go to metadata icon

Lamb, J. J., B. P. Sandford, G. A. Axel, M. G. Nesbit, B. L. Sanderson. 2018. Monitoring the migrations of wild Snake River spring/summer Chinook salmon juveniles: fish collection and tagging, 2017. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.Go to metadata icon

Morris, M. S., E. F. Holcombe, A. J. Borsky, P. J. Bentley, B. P. Sandford. 2018. Detection of PIT tagged juvenile salmonids migrating in the Columbia River estuary, 2017. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.Go to metadata icon

Qi, L., J. T. Thorson, V. V. Gertseva, A. E. Punt. 2018. The benefits and risks of incorporating climate-driven growth variation into stock assessment models, with application to Splitnose Rockfish (Sebastes diploproa). ICES Journal of Marine Science. doi:https://doi.org/10.1093/icesjms/fsx147Go to metadata icon

Stuart, K., R. Johnson, L. Armbruster, M. Drawbridge. 2018. Arachidonic acid in the diet of captive yellowtail and its effects on egg quality. North American Journal of Aquaculture, 80:97-106. doi:10.1002/naaq.10003Go to metadata icon

Waters, C. D., J. J. Hard, M. S. Brieuc, D. E. Fast, K. I. Warheit, C. M. Knudsen, W. J. Bosch, K. A. Naish. 2018. Genome-wide association analyses of fitness traits in captive reared Chinook salmon: Applications in evaluating conservation strategies. Evolutionary Applications.Go to metadata icon