Northwest Fisheries Science Center

Recent Scientific Publications

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This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.

In press

Andrews, K. S., K. M. Nichols, C. J. Harvey, N. Tolimieri, R. Garner, A. Obaza, D. M. Tonnes. In press. All hands on deck: local ecological knowledge and expert volunteers contribute to the first delisting of a marine fish species under the Endangered Species Act. Citizen Science: Theory and Practice.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.Go to metadata icon

Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035Go to metadata icon

Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216Go to metadata icon

Armitage, D. R., D. K. Okamoto, J. J. Silver, T. Francis, P. S. Levin, A. E. Punt, I. P. Davies, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, A. D. MacCall, M. R. Poe, S. Reifenstuhl, A. O. Shelton, T. F. Thornton, R. Voss, J. Woodruff. In press. Integrating governance with quantitative evaluation of resource management strategies to improve social and ecological outcomes. BioScience.Go to metadata icon

Balmer, B. C., G. M. Ylitalo, S. Watwood, B. M. Quigley, J. L. Bolton, K. L. Mullin, P. E. Rosel, T. K. Rowles, T. Speakman, E. S. Zolman, L. H. Schwacke. In press. Comparison of persistent organic pollutants (POPs) between small cetaceans in coastal and estuarine waters of the northern Gulf of Mexico. Marine Pollution Bulletin.Go to metadata icon

Bellanger, M., D.S. Holland, C.M. Anderson, O. Guyader, and C. Macher. Incentive effect of joint and several liability in fishery cooperatives on regulatory compliance. Fisher and Fisheries.Go to metadata icon

Charnley, S., R. McLain, M. R. Poe. In press. Natural Resource Access Rights and Wrongs: Nontimber Forest Products Gathering in Urban Environments. Society & Natural Resources.Go to metadata icon

Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11Go to metadata icon

Dai, X., B. D. Bill, N. G. Adams, U. Tillmann, C. A. Sloan, D. Lu, V. L. Trainer. In press. The effect of temperature and salinity on growth rate and azaspiracid concentration in two strains of Azadinium poporum (Dinophyceae) from Puget Sound, Washington State. Harmful Algae.Go to metadata icon

Gao, J., J. T. Thorson, C. Szuwalski, H. Wang. In press. Historical dynamics of the demersal fish community in the East and South China Seas. PLoS ONE.Go to metadata icon

Goldbogen, J. A., D. E. Cade, D. M. Wisniewska, et al., M. B. Hanson, M. M. Holt. In press. Why whales are big but not bigger: Physiological drivers and ecological limits in the age of ocean giants. Science.Go to metadata icon

Haltuch, M. A., N. Tolimieri. In press. Oceanographic drivers of petrale sole recruitment in the California Current. Fisheries Oceanography.Go to metadata icon

Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.Go to metadata icon

Harvey, C. J., J. L. Fisher, J. F. Samhouri, G. D. Williams, T. B. Francis, K. C. Jacobson, Y. L. deReynier, M. E. Hunsicker, N. Garfield. In press. The importance of long-term ecological time series for integrated ecosystem assessment and ecosystem-based management. Progress in Oceanography.Go to metadata icon

Holt, M. M., M. B. Hanson, C. K. Emmons, D. Haas, D. A. Giles, J. T. Hogan. In press. Sounds associated with foraging and prey capture in individual fish-eating killer whales, Orcinus orca. Journal of the Acoustical Society of America.Go to metadata icon

Keogh, M. J., B. Taras, K. B. Beckmen, K. A. Burek-Huntington, G. M. Ylitalo, B. S. Fadely, L. Rea, K. W. Pitcher. In press. Organochlorine contaminant concentrations in blubber of young Steller sea lion (Eumetopias jubatus) are influenced by region, age, sex, and lipid stores. Science of the Total Environment.Go to metadata icon

Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.Go to metadata icon

Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment.Go to metadata icon

Michel, C. J., J. M. Smith, B. Lehman, N. J. Demetras, D. D. Huff, P. L. Brandes, J. A. Israel, T. P. Quinn, S. A. Hayes. In press. Limitations of active removal to manage predatory fish populations. North American Journal of Fisheries Management.Go to metadata icon

Moran, P., J. Dazey, L. LaVoy, S. Young. In press. Genetic Mixture Analysis Supports Re-calibration of the Fishery Regulation Assessment Model. Fisheries.Go to metadata icon

Morgan, C. A., B. R. Beckman, L. A. Weitkamp, K. L. Fresh. In press. Recent Ecosystem Disturbance in the Northern California Current. Fisheries. doi:10.1002/fsh.10273Go to metadata icon

Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.Go to metadata icon

Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003Go to metadata icon

Ohlberger, J., D. E. Schindler, E. J. Ward, T. Walsworth, T. E. Essington. In press. Resurgence of an apex marine predator and the decline in prey body size. Proceedings of the National Academy of Sciences.Go to metadata icon

Okamoto, D. K., M. R. Poe, T. B. Francis, A. E. Punt, P. S. Levin, A. O. Shelton, D. R. Armitage, J. S. Cleary, R. R. Jones, H. Kitka, L. C. Lee, A. D. MacCall, J. McIssac, S. Reifenstuhl, J. J. Silver, J. Schmidt, T. F. Thornton, R. Voss, J. Woodruff. In press. Attending to spatial social-ecological sensitivities to improve ecological trade-off assessments. Fish and Fisheries.Go to metadata icon

Punt, A. E., J. M. Cope. In press. Extending Integrated Stock Assessments Models to Use Non-Depensatory Three-Parameter Stock-Recruitment Relationships. Fisheries Research.Go to metadata icon

Trushenski, J. T., D. A. Larsen, M. A. Middleton, M. Jakaitis, E. L. Johnson, C. C. Kozfkay, P. A. Kline. In press. Search for the Smoking Gun: Identifying and Addressing the Causes of Post-release Morbidity and Mortality of Hatchery-reared Snake River Sockeye Salmon Smolts. Transactions of the American Fisheries Society.Go to metadata icon

Waples RS, KA Naish, CR Primmer.  2020.  Conservation and management of salmon in the age of genomics.  Annual Review of Animal Biosciences 8:xxx-xxx (in press).Go to metadata icon

Weil, J., M. Trudel, S. Tucker, R. D. Brodeur, F. Juanes. In press. Percent ash-free dry weight as a robust method to estimate energy density across taxa. Ecology and Evolution.Go to metadata icon

Wiedenmann, J., J. Wilen, P. S. Levin, M. Plummer, M. Mangel. In press. A framework for exploring the bioeconomic causes and consequences of ecosystem fishing patterns. Coastal Management.Go to metadata icon


Colt, J., Maynard, D. 2019a. Correction of Metabolic Parameters and Unit Process Performance Data. ¿ Part I. Derivation of Equations. Aquacultural Engineering, 86, 101999, Colt, J., Maynard, D. 2019b. Correction of Metabolic Parameters and Unit Process Performance Data. ¿ Part II. Comparison of Analytical Approaches. Aquacultural Engineering, 87, 102019, to metadata icon

Gardner, L. D., K. A. Peck, G. W. Goetz, T. L. Linbo, J. Cameron, N. L. Scholz, B. A. Block, J. Incardona. 2019. Cardiac remodeling in response to embryonic crude oil exposure involves unconventional NKX family members and innate immunity genes. Journal of Experimental Biology.Go to metadata icon

Gertseva, V. V., S. E. Matson, I. G. Taylor, J. Bizzaro, J. R. Wallace. 2019. The next link will exit from NWFSC web site Stock assessment of the Longnose Skate (Beringraja rhina) in state and Federal waters off California, Oregon and Washington. Pacific Fishery Management Council, Portland, OR.Go to metadata icon

Gonzalez, S., J. K. Horne, E. J. Ward. 2019. Temporal variability in pelagic biomass distributions at wave and tidal sites and implications for standardization of biological monitoring. International Marine Energy Journal.Go to metadata icon

Holland, D.S. and C. Martin. Bycatch Quotas, Risk Pools, and Cooperation in the Pacific Whiting Fishery. Frontiers in Marine Science, 27 September 2019 to metadata icon

Meador, J. P., J. Nahrgang. 2019. Characterizing Crude Oil Toxicity to Early-Life Stage Fish Based On a Complex Mixture: Are We Making Unsupported Assumptions? Environmental Science & Technology, 53:11080-11092. doi:10.1021/acs.est.9b02889Go to metadata icon

Moore, M. K., K. Frazier M.S. 2019. Humans are Animals, Too: Critical Commonalities and Differences Between Human and Wildlife Forensic Genetics. Journal of Forensic Sciences, 64(6):1603-1621. doi: to metadata icon

Nelson, B., A. O. Shelton, M. J. Ford, E. J. Ward. 2019. Synchronization of hatchery-origin Chinook salmon. Ecosphere.Go to metadata icon

Ogden, D. A., A. L. Barenberg, R. M. Gleason. 2019. Operation of the adult trap at Lower Granite Dam, 2018. Report of the National Marine Fisheries Service to the Bonneville Power Administration. Portland, Oregon.Go to metadata icon

The next link will exit from NWFSC web site Rhodes, L. D. and Mimeault, C. 2019. Characterization of Renibacterium salmoninarum and bacterial kidney disease to inform pathogen transfer risk assessments in British Columbia. DFO Can. Sci. Advis. Sec. Res. Doc. 2019/018. vi + 46 p.Go to metadata icon

Sakinan, S., G. L. Lawson, P. H. Wiebe, D. Chu. 2019. Accounting for seasonal and composition-related variability in acoustic material properties in estimating copepod and krill target strength. Limnology and Oceanography: Methods.Go to metadata icon

Satterthwaite, W. H., K. S. Andrews, B. J. Burke, J. L. Gosselin, C. M. Greene, C. J. Harvey, S. H. Munsch, M. R. O'Farrell, J. F. Samhouri, K. L. Sobocinski. 2019. Ecological thresholds in forecast performance for key United States West Coast Chinook salmon stocks. ICES Journal of Marine Science.Go to metadata icon

Taylor, I. G., V. V. Gertseva, A. Stephens, J. Bizzaro. 2019. The next link will exit from NWFSC web site Status of Big Skate (Beringraja binoculata) Off the U.S. West Coast. Report to Pacific Fishery Management Counci Portland, OR.Go to metadata icon

Tennessen, J. B., M. M. Holt, E. J. Ward, M. B. Hanson, C. K. Emmons, D. A. Giles, J. T. Hogan. 2019. Hidden Markov models reveal temporal patterns and sex differences in killer whale behavior. Scientific Reports.Go to metadata icon

Ward, E. J., S. C. Anderson, L. Damiano, M. E. Hunsicker, M. A. Litzow. 2019. Modeling regimes with extremes: the bayesdfa package for identifying and forecasting common trends and anomalies in multivariate time-series data. R Journal.Go to metadata icon

Windsor, A. M. PhD, M. K. Moore, K. A. Warner, S. R. Stadig, J. Deeds. 2019. Evaluation of variation within the barcode region of Cytochrome c Oxidase I (COI) for the detection of commercial Callinectes sapidus Rathbun, 1896 (blue crab) products of non-US origin. PeerJ, 7:e7827. doi: to metadata icon