Click the links to go to documents. Click the green arrow to see metadata.This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.
Albergaria-Barbosa, A. C., D. A. da Silva, A. J. Rocha, S. Taniguchi, J. F. Dias, V. F. Patire, W. S. Fernandez, R. C. Figueira, M. C. Bicego. In press. Evaluation of Polycyclic Aromatic Hydrocarbons bioavailability on Santos Bay (Brazil) through biliary metabolites concentrations. Marine Pollution Bulletin.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035
Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216
Breslow, S. J., A. Margaret, D. Holstein, B. Sojka, R. Barnea, X. Basurto, C. Carothers, S. Charnley, S. Coulthard, N. Dolsak, J. Donatuto, C. Garcia-Quijano, C. Hicks, A. Levine, M. B. Mascia, K. C. Norman, M. R. Poe, T. Satterfield, K. St. Martin, P. S. Levin. In press. Evaluating Indicators of Human Wellbeing for Ecosystem-Based Management. Ecosystem Health & Sustainability, (12). doi:10.1080/20964129.2017.1411767
Brodeur, R. D., M. E. Hunsicker, A. Hann, T. W. Miller. In press. Effects of warming ocean conditions on feeding ecology of small pelagic fishes in a coastal upwelling ecosystem: a shift to gelatinous food sources. Marine Ecology Progress Series.
Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11
Hale, M., G. McKinney, F. P. Thrower, K. M. Nichols. In press. Evidence of sex-bias in gene expression in the brain transcriptome of two populations of rainbow trout (Oncorhynchus mykiss) with divergent life histories. PLoS ONE.
Hall, J. E., T. P. Khangaonkar, C. A. Rice, J. W. Chamberlin, T. Zackey, F. E. Leonetti, M. Rustay, K. L. Fresh, A. N. Kagley, M. Rowse. In press. Characterization of annual salinity and temperature patterns in a large river delta to support tidal wetland habitat restoration efforts. Northwest Science.
Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.
Haver, S., J. Gedamke, L. Hatch, R. Dziak, S. Van Parijs, M. McKenna, J. Barlow, C. Berchok, E. DiDonato, M. B. Hanson, J. Haxel, M. M. Holt, D. Lipski, H. Matsumoto, C. Meinig, D. Mellinger, S. Moore, E. M. Oleson, M. Soldevilla, H. Klinck. In press. Monitoring Long-Term Soundscape Trends in U.S. Waters: The NOAA/NPS Ocean Noise Reference Station Network. Marine Policy.
Keller, A. A., P. H. Frey, J. R. Wallace, M. A. Head, C. R. Wetzel, J. M. Cope, J. H. Harms. In press. Canary rockfishes (Sebastes pinniger) return from the brink: catch, distribution and life history along the U.S. west coast (Washington to California). Marine Ecology Progress Series.
Kiffney, P. M., N. Sean, C. Jeremy, M. Liermann, D. G. Burrows. In press. Multiple pathways of carbon and nitrogen incorporation by consumers across an experimental gradient of salmon carcass inputs. Ecosphere.
Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.
Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.
Litz, M. N., J. A. Miller, R. D. Brodeur, E. A. Daly, L. A. Weitkamp, A. G. Hansen. In press. Energy dynamics of subyearling Chinook salmon reveal the importance of piscivory to short term growth during early marine residence. Fisheries Oceanography.
Manhard, C. V., M. Adkinson, J. J. Hard, W. W. Smoker, A. J. Gharrett. In press. Local adaptation of phenology revealed in outcrosses between spawning segments of a salmonid population. Molecular Ecology.
Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.
Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003
Neely, M. G., J. S. Morey, P. Anderson, B. C. Balmer, G. M. Ylitalo, E. S. Zolman, T. Speakman, C. Sinclair, M. Bachman, K. Huncik, J. R. Kucklick, P. E. Rosel, K. L. Mullin, T. K. Rowles, L. H. Schwacke, F. M. Van Dolah. In press. Skin Transcriptomes of common bottlenose dolphins (Tursiops truncatus) from the Northern Gulf of Mexico and Southeastern U.S. Atlantic Coast. Marine Genomics.
Neuman, M. J., S. Wang, S. Busch, C. Friedman, K. Gruenthal, R. G. Gustafson, D. Kushner, K. Stierhoff, G. VanBlaricom, S. Wright. In press. A Status Review of Pinto Abalone (Haliotis kamtschatkana) Along the West Coast of North America: Interpreting Trends, Addressing Uncertainty, and Assessing Risk for a Wide-ranging Marine Invertebrate. Journal of Shellfish Research.
Nogueira, A., N. Tolimieri, D. Gonzalez-Troncoso. In press. Using multivariate state-space models to examine commercial stocks p of Sebastes spp on the Flemish Cap. Canadian Journal of Fisheries and Aquatic Sciences.
Stern, R., S. K. Moore, V. L. Trainer, B. D. Bill, A. Fischer, S. Batten. In press. Spatial and temporal patterns of Pseudo-nitzschia genetic diversity in the North Pacific Ocean from the Continuous Plankton Recorder survey. Marine Ecology Progress Series.
Waples, R. S., A. R. Hoelzel, O. E. Gaggiotti, R. Tiedemann, P. Palsboll, F. Cipriano, J. A. Jackson, J. W. Bickham, A. R. Lang. (in press). Guidelines for Genetic Data Analysis. Journal of Cetacean Research and Management.
Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. In press. Habitat complexity increases spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences.
Farmer, N. A., K. Baker, D. G. Zeddies, S. L. Denes, D. P. Noren, L. Garrison, A. Machernis, E. M. Fougères, M. Zykov. 2018. Population consequences of disturbance by offshore oil and gas activity for endangered sperm whales (Physeter macrocephalus). Biological Conservation, 227:189-204. doi:https://doi.org/10.1016/j.biocon.2018.09.006
Luckenbach, J. A., Y. Yamamoto. 2018. Genetic & Environmental Sex Determination in Cold-Blooded Vertebrates: Fishes, Amphibians, and Reptiles. In Skinner, M. K., P. Swanson. (Eds.) Encyclopedia of Reproduction. Elsevier.
Thorson, J. T. 2018. Three problems with the conventional delta-model for biomass sampling data, and a computationally efficient alternative. Canadian Journal of Fisheries and Aquatic Sciences, 75(9):1369-1382. doi:10.1139/cjfas-2017-0266
Turner, J. W., J. J. Tallman, A. Macias, L. J. Pinnell, N. Elledge, D. N. Azadani, W. B. Nilsson, R. N. Paranjpye, R. N. Paranjpye, E. V. Armbrust, M. S. Strom. 2018. Comparative Genomic Analysis of Vibrio diabolicus and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species. Frontiers in Microbiology, 9(1893). doi:10.3389/fmicb.2018.01893
Ward, E. J., K. Oken, K. A. Rose, S. Sable, K. Watkins, M. D. Scheuerell, E. E. Holmes. 2018. Applying spatiotemporal models to monitoring data to quantify fish population responses to the Deepwater Horizon oil spill in the Gulf of Mexico. Environmental Monitoring and Assessment.
Zeman, S. M., M. Corrales-Ugalde, R. D. Brodeur, K. R. Sutherland. 2018. Trophic ecology of the neustonic cnidarian Velella velella in the northern California Current during an extensive bloom year: insights from gut contents and stable isotope analysis. Marine Biology, 165:150. doi:https://doi.org/10.1007/s00227-018-3404-1