Click the links to go to documents. Click the green arrow to see metadata.This is a list of publications recently entered (within the past 4 weeks) into the NWFSC Publications Database.
Andrews, K. S., K. M. Nichols, C. J. Harvey, N. Tolimieri, R. Garner, A. Obaza, D. M. Tonnes. In press. All hands on deck: local ecological knowledge and expert volunteers contribute to the first delisting of a marine fish species under the Endangered Species Act. Citizen Science: Theory and Practice.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, M. Rew, J. P. Dietrich. In press. Dietary exposure to a binary mixture of polybrominated diphenyl ethers alters innate immunity and disease susceptibility in juvenile Chinook salmon (Oncorhynchus tshawytscha). Ecotoxicology and Environmental Safety.
Arkoosh, M. R., A. L. Van Gaest, S. A. Strickland, G. P. Hutchinson, A. B. Krupkin, J. P. Dietrich. In press. Disruption of thyroid hormone concentrations in juvenile Chinook salmon (Oncorhynchus tshawytscha) exposed to polybrominated diphenyl ethers, BDE-47 and BDE-99. Chemosphere, 171:1-8. doi:DOI: 10.1016/j.chemosphere.2016.12.035
Arkoosh, M. R., J. Dietrich, M. B. Rew, W. Olson, G. Young, and F. W. Goetz. 2018. Exploring the efficacy of vaccine techniques in juvenile sablefish, Anoplopoma fimbria. Aquaculture Research, 49:205-216
Armitage, D. R., D. K. Okamoto, J. J. Silver, T. Francis, P. S. Levin, A. E. Punt, I. P. Davies, J. S. Cleary, S. C. Dressel, R. R. Jones, H. Kitka, L. C. Lee, A. D. MacCall, M. R. Poe, S. Reifenstuhl, A. O. Shelton, T. F. Thornton, R. Voss, J. Woodruff. In press. Integrating governance with quantitative evaluation of resource management strategies to improve social and ecological outcomes. BioScience.
Balmer, B. C., G. M. Ylitalo, S. Watwood, B. M. Quigley, J. L. Bolton, K. L. Mullin, P. E. Rosel, T. K. Rowles, T. Speakman, E. S. Zolman, L. H. Schwacke. In press. Comparison of persistent organic pollutants (POPs) between small cetaceans in coastal and estuarine waters of the northern Gulf of Mexico. Marine Pollution Bulletin.
Campbell, M. A., M. Hale, G. McKinney, K. M. Nichols, D. E. Pearse. In press. Long term conservation of ohnologs through partial tetrasomy following whole-genome duplication in Salmonidae. Genes, Genomes, Genetics.
Chittaro, P. M., J. Hegg, B. P. Kennedy, L. A. Weitkamp, L. L. Johnson, C. Bucher, R. W. Zabel. In press. Juvenile river residence and performance of Snake River fall Chinook salmon. Ecology of Freshwater Fish.
Ecotoxicol Environ Saf. 2017 Aug;142:157-163. doi: 10.1016/j.ecoenv.2017.03.044. Epub 2017 Apr 11
Gavery, M., K. M. Nichols, B. A. Berejikian, C. P. Tatara, G. W. Goetz, J. T. Dickey, D. M. Van Doornik, P. Swanson. In press. Temporal dynamics of DNA methylation patterns in response to rearing juvenile steelhead (Oncorhynchus mykiss) in a hatchery versus simulated stream environment. Genes.
Gonzalez, S., J. K. Horne, E. J. Ward. In press. Temporal variability in pelagic biomass distributions at wave and tidal sites and implications for standardization of biological monitoring. International Marine Energy Journal.
Harding, L. B., I. R. Schultz, D. A. da Silva, G. M. Ylitalo, D. Ragsdale, S. I. Harris, S. Bailey, B. V. Pepich, P. Swanson. In press. Wastewater treatment plant effluent alters pituitary gland gonadotropin mRNA levels in juvenile coho salmon (Oncorhynchus kisutch). Aquatic Toxicology.
Huynh, T. B., W. T. Fairgrieve, E. S. Hayman, J. S. Lee, J. A. Luckenbach. In press. Inhibition of ovarian development and instances of sex reversal in genotypic female sablefish (Anoplopoma fimbria) exposed to elevated water temperature. General and Comparative Endocrinology, 279:88-98.
Keller, A. A., J. H. Harms, J. R. Wallace, C. Jones, J. A. Benante, A. Chappell. In press. Changes in long-lived rockfishes after more than a decade of protection within California¿s largest marine reserve on Areas (2014 - 2016). Marine Ecology Progress Series, 623:175-193. doi:https://doi.org/10.3354/meps13019
Kuriyama, P. T., T. A. Branch, A. C. Hicks, J. H. Harms, O. S. Hamel. In press. Investigating three sources of bias in hook-and-line surveys: survey design, gear saturation and multispecies interactions. Canadian Journal of Fisheries and Aquatic Sciences.
Lema, S. C., M. I. Chow, E. J. Reiner, A. A. Westman, A. H. Dittman, D. May, K. M. Hardy. In press. Endocrine and metabolic impacts of warming aquatic habitats: differential responses between recently-isolated populations of a eurythermal desert pupfish. Conservation Physiology.
Leong, K., S. Wongbusarakum, R. J. Ingram, A. Mawyer, M. R. Poe. In press. Improving Representation of Human Well-Being and Cultural Importance in the West Hawai¿i Integrated Ecosystem Assessment. Frontiers in Ecology and the Environment.
Murdoch, A. R., C. J. Herring, C. H. Frady, K. E. See, C. E. Jordan. In press. Estimating observer error and steelhead redd abundance using a modified Gaussian area-under-the-curve framework. Canadian Special Publication of Fisheries and Aquatic Sciences.
Naish, K. A., R. B. Phillips, M. S. Brieuc, L. Newton, A. Elz, L. K. Park. In press. Comparative genome mapping between Chinook salmon (Oncorhynchus tshawytscha) and rainbow trout (O. mykiss) based on homologous microsatellite loci. Genes, Genomes, Genetics, 3(12):2281-2288. doi:10.1534/g3.113.008003
Stimpert, A. K., B. C. Madrigal, W. W. Wakefield, M. M. Yoklavich. In press. Acoustic influence of underwater mobile survey vehicles on the soundscape of Pacific rockfish habitat. Journal of the Acoustical Society of America Express Letters.
Trushenski, J. T., D. A. Larsen, M. A. Middleton, M. Jakaitis, E. L. Johnson, C. C. Kozfkay, P. A. Kline. In press. Search for the Smoking Gun: Identifying and Addressing the Causes of Post-release Morbidity and Mortality of Hatchery-reared Snake River Sockeye Salmon Smolts. Transactions of the American Fisheries Society.
Crozier, L. G., M. M. McClure, T. J. Beechie, S. J. Bograd, D. A. Boughton, M. I. Carr, T. D. Cooney, J. B. Dunham, C. M. Greene, M. A. Haltuch, E. L. Hazen, D. M. Holzer, D. D. Huff, R. C. Johnson, C. E. Jordan, I. C. Kaplan, S. T. Lindley, N. J. Mantua, P. B. Moyle, J. M. Myers, M. W. Nelson, L. A. Weitkamp, L. A. Weitkamp, E. Willis-Norton, M. W. Nelson. 2019. Climate vulnerability assessment for Pacific salmon and steelhead in the California Current Large Marine Ecosystem. PLoS ONE, 14(7).
Haltuch, M. A., E. Brooks, J. K. Brodziak, K. F. Johnson, N. Klibansky, R. D. Nash, M. R. Payne, K. Shertzer, S. Subbey, B. K. Wells. 2019. Unraveling the Recruitment Problem: A Review of Environmentally-Informed Forecasting. Fisheries Research, 217(September):189-216. doi:https://doi.org/10.1016/j.fishres.2018.12.016
Jackson, A. D., M. L. Moser, S. Onjukka, S. E. LaPatra, K. Lujan, C. Samson, M. G. White, M. Blair, L. D. Rhodes, R. Lampman, A. N. Maine, J. C. Jolley. 2019. Occurrence of pathogens in Pacific lamprey (Entosphenus tridentatus). Reviews in Fish Biology and Fisheries, https://doi.org/10.1007/s11160-019-09572-0. doi:https://doi.org/10.1007/s11160-019-09572-0
Johnson, K. F., J. T. Thorson, A. E. Punt. 2019. Investigating the value of including depth during spatiotemporal index standardization. Fisheries Research, 216:12-137. doi:10.1016/j.fishres.2019.04.004
Kozfkay, C. C., M. Peterson, B. P. Sandford, E. Johnson, P. A. Kline. 2019. The productivity and viability of Snake River sockeye salmon hatchery adults released into Redfish Lake, Idaho. Transactions of the American Fisheries Society, 148(2):308-323.
Lehnert, SJ, T Kess, P Bentzen, MP Kent, S Lien, J Gilbey, M Clément, NW Jeffrey, RS Waples, and IR Bradbury. 2019. Genomic signatures and correlates of widespread population declines in salmon. Nature Communications 10:2996 (doi: 10.1038/s41467-019-10972).
Maunder, M., J. T. Thorson. 2019. Modeling temporal variation in recruitment in fisheries stock assessment: a review of theory and practice. Fisheries Research, 217:71-86. doi:https://doi.org/10.1016/j.fishres.2018.12.014
Moser, M. L., J. Hume, K. Aronsuu, R. Lampman, A. D. Jackson. 2019. Lamprey Reproduction and Early Life History: Insights from Artificial Propagation. In Docker, M. F. (Ed.) Biology of Lampreys Volume 2. Springer.
Thorson, J. T. 2019. Correcting bias-correction: Let's simplify stock assessment by replacing tuning algorithms with statistics. Fisheries Research, 217:133-139. doi:https://doi.org/10.1016/j.fishres.2018.02.005
Thorson, J. T., M. W. Dorn, O. S. Hamel. 2019. Steepness for West Coast rockfishes: Results from a twelve-year experiment in iterative regional meta-analysis. Fisheries Research, 217(11-20). doi:https://doi.org/10.1016/j.fishres.2018.03.014
Thorson, J. T., M. Rudd, H. Winker. 2019. The case for estimating recruitment variation in data-moderate and data-poor age-structured models. Fisheries Research, 217:87-97. doi:https://doi.org/10.1016/j.fishres.2018.07.007
Trigg, S., P. McElhany, M. Maher, D. Perez, S. Busch, K. M. Nichols. 2019. Uncovering mechanisms of global ocean change effects on the Dungeness crab (Cancer magister) through metabolomics analysis. Scientific Reports, 9:10717. doi:https://doi.org/10.1038/s41598-019-46947-6
Wathen, G., J. E. Allgeier, N. Bouwes, M. M. Pollock, D. E. Schindler, C. E. Jordan. 2019. Beaver activity increases habitat complexity and spatial partitioning by steelhead trout. Canadian Journal of Fisheries and Aquatic Sciences, 76(7):1086-1095. doi:https://doi.org/10.1139/cjfas-2018-0171